Wall clock time and date at job start Sun Mar 29 2020 22:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47268 * 2 1 4 4 C 1.50701 * 109.46935 * 120.00110 * 2 1 3 5 5 C 1.38125 * 120.39656 * 274.99838 * 4 2 1 6 6 C 1.39630 * 118.32829 * 179.97438 * 5 4 2 7 7 N 1.38544 * 120.52691 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99434 * 184.99776 * 7 6 5 9 9 C 1.46495 * 120.00121 * 5.00252 * 7 6 5 10 10 C 1.50699 * 109.47441 * 89.99586 * 9 7 6 11 11 H 1.08000 * 119.99949 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00326 * 179.97438 * 10 9 7 13 13 N 1.31515 * 119.99713 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00186 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47064 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47627 * 120.00239 * 14 12 10 17 17 H 1.48502 * 109.46874 * 240.00280 * 14 12 10 18 18 N 1.32990 * 118.93581 * 0.02562 * 6 5 4 19 19 C 1.31744 * 120.69004 * 359.95287 * 18 6 5 20 20 N 1.31791 * 121.83456 * 0.05033 * 19 18 6 21 21 H 1.09002 * 109.47267 * 300.00094 * 1 2 3 22 22 H 1.09005 * 109.46844 * 59.99650 * 1 2 3 23 23 H 1.08991 * 109.47347 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46818 * 239.99726 * 2 1 3 25 25 H 1.08996 * 109.47326 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47247 * 299.99803 * 3 2 1 27 27 H 1.09002 * 109.47053 * 59.99774 * 3 2 1 28 28 H 1.07990 * 120.83395 * 359.70504 * 5 4 2 29 29 H 1.09005 * 109.46706 * 90.00928 * 8 7 6 30 30 H 1.08999 * 109.46996 * 210.00024 * 8 7 6 31 31 H 1.08996 * 109.47644 * 330.00427 * 8 7 6 32 32 H 1.09001 * 109.47083 * 210.00269 * 9 7 6 33 33 H 1.09000 * 109.46927 * 329.99872 * 9 7 6 34 34 H 0.97005 * 119.99979 * 179.97438 * 13 12 10 35 35 H 1.08007 * 119.08508 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1674 -0.0294 2.4245 6 6 2.6361 -0.7301 3.5376 7 7 2.7895 -0.0918 4.7576 8 6 3.3844 -0.8075 5.8890 9 6 2.3566 1.2988 4.9163 10 6 0.9187 1.3291 5.3664 11 1 0.3811 0.4049 5.5194 12 6 0.2897 2.5366 5.5839 13 7 0.9444 3.6619 5.3981 14 14 -1.4924 2.5741 6.1424 15 1 -1.9985 1.1844 6.2765 16 1 -1.5858 3.2641 7.4540 17 1 -2.3100 3.3035 5.1401 18 7 2.9339 -2.0197 3.4076 19 6 2.7893 -2.6296 2.2488 20 7 2.3494 -1.9964 1.1800 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.9209 1.0197 2.4943 29 1 4.4647 -0.6619 5.8834 30 1 2.9707 -0.4220 6.8209 31 1 3.1606 -1.8709 5.8045 32 1 2.9812 1.7909 5.6619 33 1 2.4500 1.8194 3.9633 34 1 0.5018 4.5115 5.5508 35 1 3.0385 -3.6778 2.1726 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040765998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:08 Heat of formation + Delta-G solvation = 39.174224 kcal Electronic energy + Delta-G solvation = -16736.313460 eV Core-core repulsion = 14155.132543 eV Total energy + Delta-G solvation = -2581.180917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35001 -36.63335 -35.45981 -32.88413 -31.54020 -30.22509 -28.00307 -26.95712 -25.54950 -23.93983 -23.39256 -21.39673 -19.59096 -16.99969 -16.71313 -16.50533 -14.91432 -14.60858 -14.54688 -14.15921 -13.96469 -13.67240 -13.40416 -13.06073 -12.62719 -12.21753 -11.90935 -11.57698 -11.40618 -11.20865 -11.01834 -10.98826 -10.83079 -10.69779 -10.34172 -10.26622 -9.76913 -9.59724 -9.02202 -8.61662 -8.52686 -7.05626 -6.19759 -4.29239 1.73624 2.08528 3.19102 3.27695 3.32482 3.76103 4.30456 4.53276 4.56070 4.88653 5.11017 5.19100 5.39755 5.42796 5.59912 5.84583 5.91037 5.97612 6.04472 6.07031 6.09540 6.10074 6.25790 6.38357 6.41473 6.47126 6.58561 6.85548 7.06345 7.11373 7.48487 7.73247 8.00615 8.14749 8.19847 8.76578 8.96351 9.38265 10.84572 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.009050 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.088674 B = 3093.201133 C = 3902.872735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C -0.148 4.148 4 C 0.192 3.808 5 C -0.272 4.272 6 C 0.444 3.556 7 N -0.578 5.578 8 C 0.100 3.900 9 C 0.248 3.752 10 C -0.535 4.535 11 H 0.060 0.940 12 C 0.065 3.935 13 N -0.892 5.892 14 Si 0.897 3.103 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.281 1.281 18 N -0.597 5.597 19 C 0.325 3.675 20 N -0.582 5.582 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.149 0.851 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 -5.537 -6.857 9.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.206 4.206 4 C 0.052 3.948 5 C -0.300 4.300 6 C 0.199 3.801 7 N -0.287 5.287 8 C -0.044 4.044 9 C 0.128 3.872 10 C -0.574 4.574 11 H 0.079 0.921 12 C -0.138 4.138 13 N -0.530 5.530 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.207 1.207 18 N -0.324 5.324 19 C 0.035 3.965 20 N -0.303 5.303 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.167 0.833 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.408 -6.102 -6.671 9.356 hybrid contribution -1.185 0.941 0.596 1.626 sum 1.222 -5.162 -6.075 8.065 Atomic orbital electron populations 1.21785 0.93678 1.02056 1.02313 1.19977 0.96181 0.95371 0.94532 1.21912 1.01111 0.94936 1.02613 1.21132 0.90290 0.89513 0.93885 1.22131 1.11246 1.03634 0.93031 1.18620 0.86814 0.87747 0.86888 1.47045 1.60671 1.14450 1.06516 1.21485 0.96327 0.97520 0.89080 1.19466 0.95192 0.74324 0.98171 1.21531 0.96634 0.92827 1.46419 0.92140 1.24935 0.98474 0.95295 0.95121 1.69931 1.36949 0.97512 1.48616 0.86445 0.84396 0.78266 0.78439 1.19711 1.20779 1.20711 1.67899 1.26955 1.09255 1.28253 1.24329 0.90018 0.99383 0.82800 1.68095 1.19837 1.09836 1.32570 0.91911 0.92174 0.92573 0.89683 0.92631 0.92192 0.91342 0.83342 0.94277 0.91400 0.91265 0.94280 0.94325 0.92517 0.80085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.18 37.16 0.34 -1.62 16 2 C -0.04 -0.61 3.27 -91.77 -0.30 -0.91 16 3 C -0.15 -2.04 8.64 37.16 0.32 -1.72 16 4 C 0.19 3.49 5.82 -82.33 -0.48 3.01 16 5 C -0.27 -5.54 8.42 -39.10 -0.33 -5.87 16 6 C 0.44 9.46 7.39 -154.77 -1.14 8.31 16 7 N -0.58 -12.59 2.96 -182.93 -0.54 -13.13 16 8 C 0.10 1.84 10.51 59.85 0.63 2.46 16 9 C 0.25 6.03 5.03 -5.20 -0.03 6.01 16 10 C -0.54 -14.23 9.39 -34.44 -0.32 -14.56 16 11 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 14 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 N -0.60 -11.78 9.23 -13.81 -0.13 -11.91 16 19 C 0.33 5.69 12.28 -92.20 -1.13 4.56 16 20 N -0.58 -10.58 10.37 -10.88 -0.11 -10.69 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.05 6.57 -51.93 -0.34 0.71 16 28 H 0.15 3.16 4.52 -52.49 -0.24 2.92 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 31 H 0.07 1.23 7.33 -51.93 -0.38 0.85 16 32 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.04 0.98 6.04 -51.93 -0.31 0.66 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.18 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 293.86 15.07 4.43 4.43 Total: -1.00 -28.78 293.86 -8.22 -36.99 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.04 Total: 1.07 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -2.54 Total: 1.32 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.05 Total: -59.60 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.78 -8.22 -36.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040765998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.167 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds