Wall clock time and date at job start Sun Mar 29 2020 22:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47268 * 2 1 4 4 C 1.50701 * 109.46935 * 120.00110 * 2 1 3 5 5 C 1.38125 * 120.39656 * 274.99838 * 4 2 1 6 6 C 1.39630 * 118.32829 * 179.97438 * 5 4 2 7 7 N 1.38544 * 120.52691 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99434 * 184.99776 * 7 6 5 9 9 C 1.46495 * 120.00121 * 5.00252 * 7 6 5 10 10 C 1.50699 * 109.47441 * 89.99586 * 9 7 6 11 11 H 1.08000 * 119.99949 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00326 * 179.97438 * 10 9 7 13 13 N 1.31515 * 119.99713 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00186 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47064 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47627 * 120.00239 * 14 12 10 17 17 H 1.48502 * 109.46874 * 240.00280 * 14 12 10 18 18 N 1.32990 * 118.93581 * 0.02562 * 6 5 4 19 19 C 1.31744 * 120.69004 * 359.95287 * 18 6 5 20 20 N 1.31791 * 121.83456 * 0.05033 * 19 18 6 21 21 H 1.09002 * 109.47267 * 300.00094 * 1 2 3 22 22 H 1.09005 * 109.46844 * 59.99650 * 1 2 3 23 23 H 1.08991 * 109.47347 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46818 * 239.99726 * 2 1 3 25 25 H 1.08996 * 109.47326 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47247 * 299.99803 * 3 2 1 27 27 H 1.09002 * 109.47053 * 59.99774 * 3 2 1 28 28 H 1.07990 * 120.83395 * 359.70504 * 5 4 2 29 29 H 1.09005 * 109.46706 * 90.00928 * 8 7 6 30 30 H 1.08999 * 109.46996 * 210.00024 * 8 7 6 31 31 H 1.08996 * 109.47644 * 330.00427 * 8 7 6 32 32 H 1.09001 * 109.47083 * 210.00269 * 9 7 6 33 33 H 1.09000 * 109.46927 * 329.99872 * 9 7 6 34 34 H 0.97005 * 119.99979 * 179.97438 * 13 12 10 35 35 H 1.08007 * 119.08508 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1674 -0.0294 2.4245 6 6 2.6361 -0.7301 3.5376 7 7 2.7895 -0.0918 4.7576 8 6 3.3844 -0.8075 5.8890 9 6 2.3566 1.2988 4.9163 10 6 0.9187 1.3291 5.3664 11 1 0.3811 0.4049 5.5194 12 6 0.2897 2.5366 5.5839 13 7 0.9444 3.6619 5.3981 14 14 -1.4924 2.5741 6.1424 15 1 -1.9985 1.1844 6.2765 16 1 -1.5858 3.2641 7.4540 17 1 -2.3100 3.3035 5.1401 18 7 2.9339 -2.0197 3.4076 19 6 2.7893 -2.6296 2.2488 20 7 2.3494 -1.9964 1.1800 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.9209 1.0197 2.4943 29 1 4.4647 -0.6619 5.8834 30 1 2.9707 -0.4220 6.8209 31 1 3.1606 -1.8709 5.8045 32 1 2.9812 1.7909 5.6619 33 1 2.4500 1.8194 3.9633 34 1 0.5018 4.5115 5.5508 35 1 3.0385 -3.6778 2.1726 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040765998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:07 Heat of formation + Delta-G solvation = 24.490524 kcal Electronic energy + Delta-G solvation = -16736.950193 eV Core-core repulsion = 14155.132543 eV Total energy + Delta-G solvation = -2581.817650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.83935 -38.22781 -36.81109 -34.85638 -33.07146 -31.69262 -29.86809 -28.08979 -27.17368 -25.53069 -25.02725 -22.94478 -20.99972 -18.74700 -18.42535 -18.15255 -16.70682 -16.15858 -16.10620 -15.58911 -15.43821 -15.11053 -14.76236 -14.66443 -14.05249 -13.83214 -13.35998 -13.15808 -13.02719 -12.78581 -12.65173 -12.38659 -12.25466 -12.19621 -11.97924 -11.90352 -11.40387 -11.29674 -10.67311 -10.54698 -10.02981 -8.76171 -8.20085 -6.41684 0.26640 0.53598 1.35283 1.37991 1.48950 2.12550 2.37471 3.02896 3.06002 3.24460 3.51855 3.83722 4.12033 4.20743 4.26943 4.45375 4.55426 4.64415 4.66252 4.76579 4.83704 4.89848 4.94616 4.98049 5.01814 5.12400 5.16372 5.33991 5.41261 5.55492 5.63284 5.89279 5.98926 6.49166 6.55404 6.74016 7.28623 7.45977 8.79242 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.009050 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.088674 B = 3093.201133 C = 3902.872735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.041 4.041 3 C -0.143 4.143 4 C 0.198 3.802 5 C -0.295 4.295 6 C 0.425 3.575 7 N -0.592 5.592 8 C 0.102 3.898 9 C 0.265 3.735 10 C -0.546 4.546 11 H 0.046 0.954 12 C 0.022 3.978 13 N -0.918 5.918 14 Si 0.958 3.042 15 H -0.275 1.275 16 H -0.273 1.273 17 H -0.274 1.274 18 N -0.604 5.604 19 C 0.325 3.675 20 N -0.583 5.583 21 H 0.039 0.961 22 H 0.090 0.910 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.131 0.869 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.270 0.730 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.612 -6.461 -7.957 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.060 4.060 3 C -0.201 4.201 4 C 0.057 3.943 5 C -0.323 4.323 6 C 0.182 3.818 7 N -0.301 5.301 8 C -0.041 4.041 9 C 0.144 3.856 10 C -0.585 4.585 11 H 0.064 0.936 12 C -0.178 4.178 13 N -0.557 5.557 14 Si 0.783 3.217 15 H -0.200 1.200 16 H -0.199 1.199 17 H -0.200 1.200 18 N -0.330 5.330 19 C 0.036 3.964 20 N -0.304 5.304 21 H 0.058 0.942 22 H 0.108 0.892 23 H 0.073 0.927 24 H 0.122 0.878 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.149 0.851 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.858 -7.053 -7.773 10.659 hybrid contribution -0.972 1.160 0.863 1.742 sum 0.886 -5.893 -6.909 9.124 Atomic orbital electron populations 1.21758 0.92837 1.02057 1.02688 1.20128 0.96754 0.95608 0.93508 1.21875 1.00996 0.94411 1.02799 1.21677 0.88678 0.89623 0.94325 1.22103 1.13009 1.03116 0.94075 1.18850 0.87450 0.88645 0.86862 1.46958 1.61637 1.13784 1.07755 1.21569 0.97114 0.97431 0.87996 1.19028 0.93995 0.75924 0.96628 1.21651 0.97703 0.92400 1.46745 0.93607 1.25656 1.02235 0.94905 0.95045 1.70012 1.38520 0.98015 1.49155 0.85504 0.79769 0.78036 0.78370 1.19980 1.19862 1.19962 1.67961 1.27324 1.08404 1.29361 1.25228 0.88410 1.00898 0.81892 1.68245 1.19851 1.09588 1.32710 0.94166 0.89154 0.92732 0.87811 0.92800 0.89320 0.93754 0.85107 0.92617 0.91614 0.90603 0.95727 0.95894 0.92129 0.75919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.18 71.98 0.66 -2.89 16 2 C -0.04 -1.14 3.27 -11.54 -0.04 -1.18 16 3 C -0.14 -3.80 8.64 71.98 0.62 -3.18 16 4 C 0.20 7.05 5.82 42.43 0.25 7.30 16 5 C -0.29 -12.22 8.42 22.58 0.19 -12.03 16 6 C 0.43 18.28 7.39 133.16 0.98 19.26 16 7 N -0.59 -26.28 2.96 -732.66 -2.17 -28.45 16 8 C 0.10 3.75 10.51 127.77 1.34 5.09 16 9 C 0.27 13.37 5.03 85.63 0.43 13.80 16 10 C -0.55 -29.73 9.39 25.60 0.24 -29.49 16 11 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 12 C 0.02 1.19 5.46 84.65 0.46 1.65 16 13 N -0.92 -51.30 13.29 21.45 0.28 -51.02 16 14 Si 0.96 42.79 29.54 68.60 2.03 44.81 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 N -0.60 -23.24 9.23 -197.61 -1.82 -25.07 16 19 C 0.33 10.70 12.28 180.90 2.22 12.92 16 20 N -0.58 -20.09 10.37 -188.33 -1.95 -22.05 16 21 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.04 1.39 6.57 -2.39 -0.02 1.37 16 28 H 0.13 5.86 4.52 -2.92 -0.01 5.84 16 29 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 31 H 0.08 2.66 7.33 -2.39 -0.02 2.64 16 32 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 33 H 0.02 1.23 6.04 -2.39 -0.01 1.21 16 34 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 35 H 0.22 5.21 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -61.32 293.86 4.80 -56.53 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.07 Total: 13.98 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 7.36 Total: 11.26 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -5.66 Total: -126.58 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -61.32 4.80 -56.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040765998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.018 kcal (2) G-P(sol) polarization free energy of solvation -61.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds