Wall clock time and date at job start Sun Mar 29 2020 22:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.38539 * 119.99913 * 269.99457 * 3 2 1 14 14 C 1.39667 * 120.53705 * 185.00067 * 13 3 2 15 15 C 1.38064 * 118.33713 * 180.02562 * 14 13 3 16 16 C 1.50705 * 120.40401 * 179.97438 * 15 14 13 17 17 N 1.32580 * 119.20303 * 359.97438 * 15 14 13 18 18 C 1.31765 * 121.01083 * 0.02562 * 17 15 14 19 19 C 1.50698 * 119.08346 * 180.02562 * 18 17 15 20 20 N 1.31779 * 121.83321 * 359.71794 * 18 17 15 21 21 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 22 22 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 23 23 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 25 25 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 26 26 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 27 27 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 28 28 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 29 29 H 1.08000 * 120.82795 * 0.02986 * 14 13 3 30 30 H 1.08995 * 109.47030 * 89.99414 * 16 15 14 31 31 H 1.08998 * 109.47294 * 210.00111 * 16 15 14 32 32 H 1.09003 * 109.46591 * 329.99972 * 16 15 14 33 33 H 1.08994 * 109.47120 * 90.00258 * 19 18 17 34 34 H 1.09001 * 109.47085 * 210.00168 * 19 18 17 35 35 H 1.09004 * 109.47073 * 330.00000 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 -0.1013 4.1246 3.2576 9 14 2.5358 3.6041 3.9290 10 1 3.3480 4.7738 3.5079 11 1 2.1528 3.7554 5.3557 12 1 3.3316 2.3619 3.7591 13 6 2.2493 2.0343 -1.1998 14 6 2.8123 3.3124 -1.2152 15 6 3.0222 3.9214 -2.4364 16 6 3.6263 5.3002 -2.5072 17 7 2.6859 3.2785 -3.5461 18 6 2.1564 2.0729 -3.4983 19 6 1.7909 1.3818 -4.7866 20 7 1.9430 1.4523 -2.3555 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 3.0644 2.7986 1.1383 27 1 2.5506 1.3453 2.0283 28 1 -0.1095 4.6333 4.0835 29 1 3.0768 3.8117 -0.2948 30 1 4.7115 5.2186 -2.5691 31 1 3.2498 5.8170 -3.3900 32 1 3.3546 5.8622 -1.6136 33 1 2.6421 0.8008 -5.1413 34 1 0.9439 0.7175 -4.6149 35 1 1.5222 2.1271 -5.5352 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:22 Heat of formation + Delta-G solvation = 44.325122 kcal Electronic energy + Delta-G solvation = -16751.906368 eV Core-core repulsion = 14170.948811 eV Total energy + Delta-G solvation = -2580.957557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.39021 -36.95286 -33.86754 -32.79102 -32.07551 -30.31644 -28.76388 -27.55033 -27.03785 -23.09565 -22.68692 -21.30081 -19.93478 -17.21575 -16.89692 -16.32506 -14.90772 -14.69728 -14.47337 -13.98641 -13.82651 -13.19793 -13.07327 -12.86536 -12.55132 -12.46302 -12.14295 -11.94932 -11.93715 -11.71154 -11.34494 -11.08120 -10.74301 -10.48298 -10.35746 -9.99301 -9.91081 -9.51846 -8.92033 -8.73111 -8.56991 -7.08295 -6.22148 -4.23215 1.66210 2.03128 3.15386 3.23071 3.24191 3.61175 4.24713 4.42577 4.51050 4.76659 5.07802 5.28617 5.58735 5.62411 5.75048 5.80763 5.83142 5.85213 5.90198 5.94829 6.01573 6.15935 6.18232 6.33039 6.38568 6.50354 6.60829 6.65980 6.92903 7.04066 7.38604 7.44075 8.04383 8.07426 8.38550 8.83886 8.92847 9.36380 10.90554 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023871 B = 0.008645 C = 0.007044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.709913 B = 3238.022370 C = 3973.852711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 N -0.570 5.570 4 C 0.220 3.780 5 C -0.537 4.537 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.891 5.891 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.452 3.548 14 C -0.284 4.284 15 C 0.188 3.812 16 C -0.100 4.100 17 N -0.579 5.579 18 C 0.348 3.652 19 C -0.077 4.077 20 N -0.589 5.589 21 H 0.071 0.929 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.266 0.734 29 H 0.143 0.857 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 -3.946 -9.097 11.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.007 3.993 3 N -0.279 5.279 4 C 0.099 3.901 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.529 5.529 9 Si 0.697 3.303 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.190 1.190 13 C 0.208 3.792 14 C -0.312 4.312 15 C 0.048 3.952 16 C -0.157 4.157 17 N -0.301 5.301 18 C 0.078 3.922 19 C -0.135 4.135 20 N -0.316 5.316 21 H 0.090 0.910 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.970 -4.363 -9.506 12.043 hybrid contribution 0.768 0.604 1.677 1.941 sum 6.739 -3.759 -7.830 10.993 Atomic orbital electron populations 1.22129 0.96177 1.00581 1.03319 1.21248 0.94730 0.82047 1.01285 1.46799 1.65334 1.12871 1.02876 1.19834 0.97615 0.92838 0.79807 1.21409 0.97609 1.30937 1.07561 0.90247 1.24877 0.96013 0.94767 0.97162 1.69890 1.27134 1.32375 1.23458 0.86936 0.83757 0.79207 0.80369 1.19836 1.20822 1.18976 1.18510 0.86318 0.88078 0.86253 1.22046 1.11185 0.97707 1.00287 1.21185 0.90755 0.95395 0.87904 1.20668 1.00394 0.91190 1.03453 1.67976 1.19800 1.10659 1.31714 1.22679 0.89234 0.87408 0.92901 1.20422 1.02161 0.99763 0.91179 1.67752 1.27445 1.38879 0.97524 0.91011 0.92859 0.93165 0.91020 0.91529 0.95266 0.94608 0.92373 0.83886 0.90581 0.90608 0.90430 0.90469 0.90281 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.24 37.16 0.38 -2.59 16 2 C 0.13 2.36 6.17 -4.04 -0.02 2.33 16 3 N -0.57 -12.00 2.56 -175.02 -0.45 -12.45 16 4 C 0.22 5.00 4.14 -5.19 -0.02 4.98 16 5 C -0.54 -14.40 9.48 -34.44 -0.33 -14.72 16 6 H 0.08 2.41 7.66 -52.49 -0.40 2.00 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 9 Si 0.87 19.99 27.47 -169.99 -4.67 15.32 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 13 C 0.45 9.54 7.38 -154.78 -1.14 8.39 16 14 C -0.28 -5.74 9.00 -39.11 -0.35 -6.09 16 15 C 0.19 3.43 6.81 -82.33 -0.56 2.86 16 16 C -0.10 -1.38 10.21 36.01 0.37 -1.02 16 17 N -0.58 -10.70 10.27 -7.07 -0.07 -10.77 16 18 C 0.35 6.28 7.64 -157.23 -1.20 5.07 16 19 C -0.08 -1.00 10.32 36.00 0.37 -0.63 16 20 N -0.59 -11.65 9.21 -9.96 -0.09 -11.74 16 21 H 0.07 1.50 7.26 -51.93 -0.38 1.12 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.23 7.48 -51.93 -0.39 0.84 16 25 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 26 H 0.03 0.65 5.47 -51.93 -0.28 0.37 16 27 H 0.04 0.80 6.95 -51.93 -0.36 0.44 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.14 2.90 6.16 -52.49 -0.32 2.58 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 293.36 15.07 4.42 4.42 Total: -1.00 -30.43 293.36 -7.79 -38.22 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.09 Total: 1.89 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -2.61 Total: 0.55 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.16 Total: -60.39 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.43 -7.79 -38.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.544 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds