Wall clock time and date at job start Sun Mar 29 2020 22:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.38539 * 119.99913 * 269.99457 * 3 2 1 14 14 C 1.39667 * 120.53705 * 185.00067 * 13 3 2 15 15 C 1.38064 * 118.33713 * 180.02562 * 14 13 3 16 16 C 1.50705 * 120.40401 * 179.97438 * 15 14 13 17 17 N 1.32580 * 119.20303 * 359.97438 * 15 14 13 18 18 C 1.31765 * 121.01083 * 0.02562 * 17 15 14 19 19 C 1.50698 * 119.08346 * 180.02562 * 18 17 15 20 20 N 1.31779 * 121.83321 * 359.71794 * 18 17 15 21 21 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 22 22 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 23 23 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 25 25 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 26 26 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 27 27 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 28 28 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 29 29 H 1.08000 * 120.82795 * 0.02986 * 14 13 3 30 30 H 1.08995 * 109.47030 * 89.99414 * 16 15 14 31 31 H 1.08998 * 109.47294 * 210.00111 * 16 15 14 32 32 H 1.09003 * 109.46591 * 329.99972 * 16 15 14 33 33 H 1.08994 * 109.47120 * 90.00258 * 19 18 17 34 34 H 1.09001 * 109.47085 * 210.00168 * 19 18 17 35 35 H 1.09004 * 109.47073 * 330.00000 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 -0.1013 4.1246 3.2576 9 14 2.5358 3.6041 3.9290 10 1 3.3480 4.7738 3.5079 11 1 2.1528 3.7554 5.3557 12 1 3.3316 2.3619 3.7591 13 6 2.2493 2.0343 -1.1998 14 6 2.8123 3.3124 -1.2152 15 6 3.0222 3.9214 -2.4364 16 6 3.6263 5.3002 -2.5072 17 7 2.6859 3.2785 -3.5461 18 6 2.1564 2.0729 -3.4983 19 6 1.7909 1.3818 -4.7866 20 7 1.9430 1.4523 -2.3555 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 3.0644 2.7986 1.1383 27 1 2.5506 1.3453 2.0283 28 1 -0.1095 4.6333 4.0835 29 1 3.0768 3.8117 -0.2948 30 1 4.7115 5.2186 -2.5691 31 1 3.2498 5.8170 -3.3900 32 1 3.3546 5.8622 -1.6136 33 1 2.6421 0.8008 -5.1413 34 1 0.9439 0.7175 -4.6149 35 1 1.5222 2.1271 -5.5352 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:21 Heat of formation + Delta-G solvation = 26.374934 kcal Electronic energy + Delta-G solvation = -16752.684747 eV Core-core repulsion = 14170.948811 eV Total energy + Delta-G solvation = -2581.735936 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.84622 -38.52428 -35.29555 -34.74268 -33.53970 -31.96972 -29.95779 -29.27973 -28.44937 -24.83082 -24.25011 -22.70485 -21.50137 -19.12037 -18.52414 -17.90129 -16.57526 -16.26264 -15.98082 -15.57370 -15.24281 -14.74042 -14.60987 -14.23577 -14.13902 -13.80355 -13.57483 -13.24295 -13.11643 -13.03937 -12.96400 -12.73475 -12.45539 -12.07343 -11.93155 -11.71284 -11.47222 -11.37707 -10.81409 -10.37981 -10.04977 -8.68749 -8.32442 -6.39571 0.21905 0.52109 1.36485 1.37209 1.47311 2.06399 2.30953 2.98168 3.00300 3.24563 3.41030 3.85252 4.19843 4.29392 4.41477 4.45822 4.53025 4.60479 4.71946 4.75090 4.79122 4.81660 4.82958 4.87655 4.95431 5.05126 5.10132 5.21647 5.37622 5.42563 5.63458 5.84242 6.21276 6.51309 6.57892 6.67335 7.24041 7.45580 8.84034 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023871 B = 0.008645 C = 0.007044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.709913 B = 3238.022370 C = 3973.852711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.128 3.872 3 N -0.582 5.582 4 C 0.229 3.771 5 C -0.535 4.535 6 H 0.027 0.973 7 C 0.016 3.984 8 N -0.944 5.944 9 Si 0.944 3.056 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.240 1.240 13 C 0.433 3.567 14 C -0.313 4.313 15 C 0.189 3.811 16 C -0.096 4.096 17 N -0.584 5.584 18 C 0.336 3.664 19 C -0.072 4.072 20 N -0.599 5.599 21 H 0.035 0.965 22 H 0.032 0.968 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.268 0.732 29 H 0.136 0.864 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 -4.596 -9.899 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.005 3.995 3 N -0.291 5.291 4 C 0.107 3.893 5 C -0.574 4.574 6 H 0.045 0.955 7 C -0.183 4.183 8 N -0.584 5.584 9 Si 0.766 3.234 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.163 1.163 13 C 0.189 3.811 14 C -0.341 4.341 15 C 0.048 3.952 16 C -0.153 4.153 17 N -0.307 5.307 18 C 0.067 3.933 19 C -0.130 4.130 20 N -0.326 5.326 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.154 0.846 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.118 -5.038 -10.351 14.087 hybrid contribution 0.006 0.811 1.777 1.954 sum 8.124 -4.227 -8.574 12.545 Atomic orbital electron populations 1.22006 0.96675 1.01910 1.00423 1.21428 0.94216 0.81046 1.02784 1.46807 1.66117 1.13753 1.02401 1.19605 0.95529 0.93093 0.81034 1.21526 0.97582 1.31299 1.06962 0.95481 1.25830 0.99672 0.94131 0.98649 1.70061 1.30045 1.33930 1.24370 0.85775 0.79303 0.80553 0.77768 1.18708 1.20883 1.16271 1.18815 0.86791 0.88696 0.86761 1.22148 1.12988 0.98003 1.00943 1.21845 0.89437 0.96766 0.87197 1.20773 1.01618 0.88723 1.04218 1.68146 1.20077 1.10919 1.31552 1.23702 0.88035 0.87541 0.93996 1.20573 1.03292 1.00147 0.89028 1.67834 1.27874 1.39233 0.97627 0.94592 0.94875 0.89656 0.89664 0.89709 0.94325 0.93224 0.92279 0.84614 0.88162 0.89401 0.90025 0.88227 0.89538 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.55 10.24 71.98 0.74 -4.81 16 2 C 0.13 4.52 6.17 86.38 0.53 5.05 16 3 N -0.58 -24.44 2.56 -707.65 -1.81 -26.25 16 4 C 0.23 10.34 4.14 85.63 0.35 10.69 16 5 C -0.53 -29.57 9.48 25.60 0.24 -29.33 16 6 H 0.03 1.74 7.66 -2.91 -0.02 1.71 16 7 C 0.02 0.87 5.47 84.66 0.46 1.33 16 8 N -0.94 -57.41 13.96 21.45 0.30 -57.11 16 9 Si 0.94 40.82 27.47 68.60 1.88 42.70 16 10 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 13 C 0.43 18.24 7.38 133.18 0.98 19.22 16 14 C -0.31 -12.62 9.00 22.57 0.20 -12.42 16 15 C 0.19 6.68 6.81 42.41 0.29 6.97 16 16 C -0.10 -2.48 10.21 71.24 0.73 -1.75 16 17 N -0.58 -20.74 10.27 -176.29 -1.81 -22.55 16 18 C 0.34 11.68 7.64 138.76 1.06 12.74 16 19 C -0.07 -1.71 10.32 71.24 0.73 -0.98 16 20 N -0.60 -23.31 9.21 -185.42 -1.71 -25.02 16 21 H 0.03 1.55 7.26 -2.39 -0.02 1.53 16 22 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.09 2.78 7.48 -2.39 -0.02 2.77 16 25 H 0.08 2.66 7.89 -2.39 -0.02 2.64 16 26 H 0.04 1.68 5.47 -2.39 -0.01 1.67 16 27 H 0.05 2.11 6.95 -2.39 -0.02 2.09 16 28 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.14 5.54 6.16 -2.91 -0.02 5.52 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 2.04 8.09 -2.39 -0.02 2.02 16 33 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -68.01 293.36 4.20 -63.81 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.01 Total: 17.71 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 6.33 Total: 6.71 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -5.03 Total: -130.93 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.88 Total: 42.70 kcal Total: -68.01 4.20 -63.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.183 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds