Wall clock time and date at job start Sun Mar 29 2020 21:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47159 * 2 1 4 4 C 1.38115 * 120.40483 * 125.00129 * 3 2 1 5 5 C 1.39622 * 118.33404 * 179.72571 * 4 3 2 6 6 N 1.38549 * 120.52871 * 179.97438 * 5 4 3 7 7 C 1.46500 * 119.99976 * 5.00460 * 6 5 4 8 8 C 1.53005 * 109.47225 * 89.99360 * 7 6 5 9 9 C 1.46497 * 120.00063 * 184.99732 * 6 5 4 10 10 C 1.50707 * 109.46721 * 90.00189 * 9 6 5 11 11 H 1.07997 * 119.99673 * 0.02562 * 10 9 6 12 12 C 1.37878 * 119.99949 * 179.97438 * 10 9 6 13 13 N 1.31521 * 119.99625 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99916 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47062 * 90.00569 * 14 12 10 16 16 H 1.48508 * 109.46832 * 210.00218 * 14 12 10 17 17 H 1.48496 * 109.47279 * 330.00362 * 14 12 10 18 18 N 1.32986 * 118.93795 * 0.02562 * 5 4 3 19 19 C 1.31742 * 120.68849 * 359.97438 * 18 5 4 20 20 N 1.31788 * 121.83673 * 359.97438 * 19 18 5 21 21 H 1.08994 * 109.47350 * 59.99991 * 1 2 3 22 22 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47126 * 299.99965 * 1 2 3 24 24 H 1.08997 * 109.46851 * 240.00005 * 2 1 3 25 25 H 1.08994 * 109.47350 * 120.00009 * 2 1 3 26 26 H 1.07998 * 120.83034 * 359.70397 * 4 3 2 27 27 H 1.08995 * 109.47321 * 209.99688 * 7 6 5 28 28 H 1.09004 * 109.47180 * 329.99550 * 7 6 5 29 29 H 1.09002 * 109.47157 * 180.02562 * 8 7 6 30 30 H 1.08995 * 109.47239 * 300.00379 * 8 7 6 31 31 H 1.09000 * 109.46427 * 60.00149 * 8 7 6 32 32 H 1.08997 * 109.47384 * 210.00067 * 9 6 5 33 33 H 1.08999 * 109.47073 * 330.00935 * 9 6 5 34 34 H 0.97005 * 119.99615 * 179.97438 * 13 12 10 35 35 H 1.07998 * 119.08399 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9095 1.8521 0.9758 5 6 3.3519 3.1756 0.9311 6 7 4.2317 3.6563 1.8873 7 6 4.7908 2.7474 2.8911 8 6 6.0946 2.1448 2.3637 9 6 4.6031 5.0734 1.8946 10 6 3.6378 5.8411 2.7608 11 1 2.8290 5.3249 3.2564 12 6 3.7880 7.2023 2.9211 13 7 4.7733 7.8307 2.3178 14 14 2.5920 8.1537 3.9952 15 1 3.0971 8.1843 5.3914 16 1 2.4647 9.5423 3.4843 17 1 1.2635 7.4910 3.9639 18 7 2.9144 3.9677 -0.0435 19 6 2.0774 3.5140 -0.9540 20 7 1.6422 2.2702 -0.9400 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.2446 1.1824 1.7540 27 1 4.9909 3.2991 3.8095 28 1 4.0778 1.9485 3.0952 29 1 6.5103 1.4682 3.1104 30 1 5.8944 1.5931 1.4453 31 1 6.8075 2.9437 2.1597 32 1 5.6126 5.1824 2.2909 33 1 4.5678 5.4635 0.8775 34 1 4.8787 8.7884 2.4303 35 1 1.7390 4.1797 -1.7342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:03 Heat of formation + Delta-G solvation = 40.650746 kcal Electronic energy + Delta-G solvation = -16520.671352 eV Core-core repulsion = 13939.554461 eV Total energy + Delta-G solvation = -2581.116890 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32156 -36.88377 -34.48589 -32.84723 -31.70738 -30.22168 -29.90155 -26.78129 -24.36270 -23.99420 -22.64829 -22.01963 -19.78338 -17.01787 -16.62414 -16.32016 -15.07972 -14.75313 -14.60703 -14.48941 -14.08339 -13.59231 -13.26547 -13.00099 -12.88462 -12.14459 -12.03545 -11.79258 -11.42525 -11.20651 -11.08358 -10.98339 -10.69563 -10.62163 -10.38845 -10.15079 -9.84158 -9.47285 -9.10010 -8.47152 -8.37883 -7.08778 -6.04842 -4.11146 1.68095 2.07429 3.27814 3.34708 3.38801 3.69364 4.41137 4.53717 4.59366 4.87378 5.15865 5.27405 5.31866 5.39764 5.41760 5.53930 5.60159 5.64983 5.83983 5.89090 5.98046 6.00970 6.14335 6.20864 6.27854 6.36505 6.47922 6.81043 7.09868 7.43082 7.62669 7.84087 8.12855 8.21583 8.25978 8.90889 9.04659 9.53374 11.01270 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.007127 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.786579 B = 3927.714638 C = 4423.676218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C 0.193 3.807 4 C -0.311 4.311 5 C 0.451 3.549 6 N -0.574 5.574 7 C 0.118 3.882 8 C -0.168 4.168 9 C 0.250 3.750 10 C -0.525 4.525 11 H 0.055 0.945 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.275 1.275 18 N -0.561 5.561 19 C 0.333 3.667 20 N -0.583 5.583 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.263 0.737 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 -13.717 -1.849 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C 0.050 3.950 4 C -0.340 4.340 5 C 0.206 3.794 6 N -0.281 5.281 7 C -0.006 4.006 8 C -0.227 4.227 9 C 0.131 3.869 10 C -0.564 4.564 11 H 0.073 0.927 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.207 1.207 16 H -0.210 1.210 17 H -0.200 1.200 18 N -0.285 5.285 19 C 0.043 3.957 20 N -0.305 5.305 21 H 0.085 0.915 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.149 0.851 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.492 -12.827 -2.365 13.279 hybrid contribution -0.283 0.260 1.313 1.368 sum -2.775 -12.566 -1.052 12.912 Atomic orbital electron populations 1.21631 0.94245 1.01182 1.02798 1.20417 0.96872 0.90756 1.02635 1.21112 0.89730 0.95408 0.88700 1.21900 1.08795 0.97632 1.05717 1.18585 0.86118 0.87857 0.86817 1.47203 1.42856 1.11191 1.26842 1.21411 0.94229 0.93162 0.91833 1.22208 0.98400 1.00965 1.01111 1.19370 0.95266 0.73083 0.99191 1.21426 1.13051 0.92774 1.29144 0.92712 1.24906 0.95626 0.97418 0.95971 1.69935 1.30727 1.09542 1.43060 0.86526 0.81437 0.79259 0.80362 1.20676 1.21037 1.20016 1.68103 1.17105 1.38016 1.05299 1.24542 0.87916 0.89658 0.93622 1.68109 1.30092 1.04866 1.27425 0.91475 0.92718 0.92997 0.90197 0.90727 0.85108 0.89723 0.91541 0.92063 0.92962 0.92093 0.95246 0.93018 0.92724 0.79822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.78 37.16 0.36 -1.23 16 2 C -0.07 -0.83 6.36 -27.88 -0.18 -1.01 16 3 C 0.19 3.16 6.19 -82.32 -0.51 2.65 16 4 C -0.31 -5.44 8.95 -39.11 -0.35 -5.79 16 5 C 0.45 9.47 7.39 -154.78 -1.14 8.33 16 6 N -0.57 -12.25 2.56 -175.03 -0.45 -12.70 16 7 C 0.12 1.97 6.00 -4.04 -0.02 1.94 16 8 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 9 C 0.25 6.43 5.23 -5.19 -0.03 6.40 16 10 C -0.52 -14.69 9.39 -34.44 -0.32 -15.01 16 11 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 14 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 N -0.56 -12.42 9.23 -13.82 -0.13 -12.54 16 19 C 0.33 6.26 12.28 -92.20 -1.13 5.12 16 20 N -0.58 -10.34 10.04 -10.88 -0.11 -10.45 16 21 H 0.07 0.83 7.98 -51.93 -0.41 0.41 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 26 H 0.13 1.95 6.10 -52.49 -0.32 1.63 16 27 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 28 H 0.07 0.97 6.05 -51.93 -0.31 0.66 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.05 1.47 7.33 -51.93 -0.38 1.09 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.19 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 297.83 15.07 4.49 4.49 Total: -1.00 -31.24 297.83 -8.71 -39.95 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.18 Total: -1.10 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -3.04 Total: 1.08 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.05 Total: -61.16 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.24 -8.71 -39.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.598 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds