Wall clock time and date at job start Sun Mar 29 2020 21:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47159 * 2 1 4 4 C 1.38115 * 120.40483 * 125.00129 * 3 2 1 5 5 C 1.39622 * 118.33404 * 179.72571 * 4 3 2 6 6 N 1.38549 * 120.52871 * 179.97438 * 5 4 3 7 7 C 1.46500 * 119.99976 * 5.00460 * 6 5 4 8 8 C 1.53005 * 109.47225 * 89.99360 * 7 6 5 9 9 C 1.46497 * 120.00063 * 184.99732 * 6 5 4 10 10 C 1.50707 * 109.46721 * 90.00189 * 9 6 5 11 11 H 1.07997 * 119.99673 * 0.02562 * 10 9 6 12 12 C 1.37878 * 119.99949 * 179.97438 * 10 9 6 13 13 N 1.31521 * 119.99625 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99916 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47062 * 90.00569 * 14 12 10 16 16 H 1.48508 * 109.46832 * 210.00218 * 14 12 10 17 17 H 1.48496 * 109.47279 * 330.00362 * 14 12 10 18 18 N 1.32986 * 118.93795 * 0.02562 * 5 4 3 19 19 C 1.31742 * 120.68849 * 359.97438 * 18 5 4 20 20 N 1.31788 * 121.83673 * 359.97438 * 19 18 5 21 21 H 1.08994 * 109.47350 * 59.99991 * 1 2 3 22 22 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47126 * 299.99965 * 1 2 3 24 24 H 1.08997 * 109.46851 * 240.00005 * 2 1 3 25 25 H 1.08994 * 109.47350 * 120.00009 * 2 1 3 26 26 H 1.07998 * 120.83034 * 359.70397 * 4 3 2 27 27 H 1.08995 * 109.47321 * 209.99688 * 7 6 5 28 28 H 1.09004 * 109.47180 * 329.99550 * 7 6 5 29 29 H 1.09002 * 109.47157 * 180.02562 * 8 7 6 30 30 H 1.08995 * 109.47239 * 300.00379 * 8 7 6 31 31 H 1.09000 * 109.46427 * 60.00149 * 8 7 6 32 32 H 1.08997 * 109.47384 * 210.00067 * 9 6 5 33 33 H 1.08999 * 109.47073 * 330.00935 * 9 6 5 34 34 H 0.97005 * 119.99615 * 179.97438 * 13 12 10 35 35 H 1.07998 * 119.08399 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9095 1.8521 0.9758 5 6 3.3519 3.1756 0.9311 6 7 4.2317 3.6563 1.8873 7 6 4.7908 2.7474 2.8911 8 6 6.0946 2.1448 2.3637 9 6 4.6031 5.0734 1.8946 10 6 3.6378 5.8411 2.7608 11 1 2.8290 5.3249 3.2564 12 6 3.7880 7.2023 2.9211 13 7 4.7733 7.8307 2.3178 14 14 2.5920 8.1537 3.9952 15 1 3.0971 8.1843 5.3914 16 1 2.4647 9.5423 3.4843 17 1 1.2635 7.4910 3.9639 18 7 2.9144 3.9677 -0.0435 19 6 2.0774 3.5140 -0.9540 20 7 1.6422 2.2702 -0.9400 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.2446 1.1824 1.7540 27 1 4.9909 3.2991 3.8095 28 1 4.0778 1.9485 3.0952 29 1 6.5103 1.4682 3.1104 30 1 5.8944 1.5931 1.4453 31 1 6.8075 2.9437 2.1597 32 1 5.6126 5.1824 2.2909 33 1 4.5678 5.4635 0.8775 34 1 4.8787 8.7884 2.4303 35 1 1.7390 4.1797 -1.7342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:02 Heat of formation + Delta-G solvation = 23.491244 kcal Electronic energy + Delta-G solvation = -16521.415444 eV Core-core repulsion = 13939.554461 eV Total energy + Delta-G solvation = -2581.860982 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.76269 -38.41347 -35.71141 -34.94040 -33.02193 -31.64364 -31.38852 -28.59544 -25.81709 -25.35977 -24.35915 -23.28614 -21.21036 -18.75686 -18.29800 -18.00847 -16.61625 -16.40429 -16.06755 -15.81216 -15.52973 -14.85156 -14.55378 -14.48292 -14.29598 -13.82725 -13.35131 -13.18588 -13.01115 -12.74229 -12.56086 -12.31432 -12.22283 -12.11601 -11.96475 -11.86187 -11.38576 -11.25087 -10.62825 -10.52820 -9.88392 -8.74086 -8.15238 -6.35300 0.28943 0.60636 1.35107 1.37206 1.47421 2.16062 2.39516 3.08144 3.10960 3.36758 3.54312 3.85047 4.11768 4.27841 4.32609 4.35769 4.46292 4.48319 4.70535 4.77817 4.83881 4.88625 4.98902 5.06697 5.09426 5.22005 5.24369 5.33601 5.43629 5.61366 5.71532 5.98921 6.10214 6.43485 6.72554 6.78408 7.33551 7.57545 8.85212 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.007127 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.786579 B = 3927.714638 C = 4423.676218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C 0.190 3.810 4 C -0.306 4.306 5 C 0.425 3.575 6 N -0.587 5.587 7 C 0.113 3.887 8 C -0.157 4.157 9 C 0.271 3.729 10 C -0.536 4.536 11 H 0.045 0.955 12 C 0.013 3.987 13 N -0.926 5.926 14 Si 0.963 3.037 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.277 1.277 18 N -0.609 5.609 19 C 0.324 3.676 20 N -0.582 5.582 21 H 0.051 0.949 22 H 0.083 0.917 23 H 0.040 0.960 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.161 0.839 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.013 0.987 33 H 0.014 0.986 34 H 0.267 0.733 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 -15.906 -1.043 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 C 0.048 3.952 4 C -0.334 4.334 5 C 0.182 3.818 6 N -0.296 5.296 7 C -0.010 4.010 8 C -0.216 4.216 9 C 0.150 3.850 10 C -0.575 4.575 11 H 0.063 0.937 12 C -0.186 4.186 13 N -0.566 5.566 14 Si 0.788 3.212 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.202 1.202 18 N -0.334 5.334 19 C 0.034 3.966 20 N -0.303 5.303 21 H 0.070 0.930 22 H 0.102 0.898 23 H 0.060 0.940 24 H 0.114 0.886 25 H 0.119 0.881 26 H 0.178 0.822 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.531 -15.061 -1.562 15.548 hybrid contribution 0.003 0.859 0.986 1.308 sum -3.528 -14.202 -0.576 14.645 Atomic orbital electron populations 1.21612 0.93633 1.02743 1.01542 1.20590 0.97235 0.87838 1.04698 1.21923 0.88644 0.97164 0.87485 1.22158 1.08369 0.96270 1.06606 1.18984 0.86619 0.89398 0.86823 1.47110 1.44011 1.10007 1.28499 1.21667 0.95884 0.92943 0.90485 1.22118 0.96610 1.00683 1.02141 1.18739 0.93991 0.75975 0.96320 1.21642 1.13100 0.93424 1.29360 0.93663 1.25750 0.97276 0.98395 0.97225 1.70048 1.32280 1.09948 1.44288 0.85489 0.78892 0.77723 0.79107 1.19152 1.20459 1.20163 1.68059 1.18734 1.39863 1.06779 1.24990 0.87427 0.90620 0.93569 1.68231 1.29740 1.04543 1.27823 0.92953 0.89776 0.94039 0.88623 0.88092 0.82201 0.90751 0.88848 0.88456 0.92850 0.94238 0.96901 0.96744 0.92452 0.77796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.78 71.98 0.70 -1.97 16 2 C -0.07 -1.34 6.36 29.85 0.19 -1.15 16 3 C 0.19 5.80 6.19 42.42 0.26 6.07 16 4 C -0.31 -10.10 8.95 22.57 0.20 -9.90 16 5 C 0.42 17.93 7.39 133.16 0.98 18.91 16 6 N -0.59 -25.54 2.56 -707.67 -1.81 -27.35 16 7 C 0.11 3.66 6.00 86.38 0.52 4.18 16 8 C -0.16 -4.23 10.24 71.98 0.74 -3.50 16 9 C 0.27 14.57 5.23 85.64 0.45 15.02 16 10 C -0.54 -30.84 9.39 25.60 0.24 -30.60 16 11 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 12 C 0.01 0.73 5.46 84.65 0.46 1.19 16 13 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 14 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 N -0.61 -27.66 9.23 -197.62 -1.82 -29.48 16 19 C 0.32 12.23 12.28 180.90 2.22 14.45 16 20 N -0.58 -19.98 10.04 -188.34 -1.89 -21.87 16 21 H 0.05 1.17 7.98 -2.39 -0.02 1.15 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.04 0.88 8.14 -2.38 -0.02 0.87 16 24 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.10 1.57 7.93 -2.39 -0.02 1.55 16 26 H 0.16 4.19 6.10 -2.91 -0.02 4.17 16 27 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 28 H 0.09 2.49 6.05 -2.38 -0.01 2.48 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.01 0.72 8.07 -2.39 -0.02 0.70 16 33 H 0.01 0.87 7.33 -2.39 -0.02 0.86 16 34 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 35 H 0.21 6.41 8.06 -2.91 -0.02 6.39 16 Total: -1.00 -69.49 297.83 4.82 -64.68 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.06 Total: 9.59 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.97 Total: 12.70 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -5.24 Total: -134.03 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.49 4.82 -64.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.168 kcal (2) G-P(sol) polarization free energy of solvation -69.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds