Wall clock time and date at job start Sun Mar 29 2020 22:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47054 * 2 1 4 4 C 1.46898 * 111.00251 * 196.38894 * 3 2 1 5 5 C 1.50706 * 109.46473 * 66.04831 * 4 3 2 6 6 H 1.07994 * 120.00177 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99707 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00254 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99929 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47291 * 90.00188 * 9 7 5 11 11 H 1.48508 * 109.46868 * 209.99757 * 9 7 5 12 12 H 1.48498 * 109.47289 * 329.99571 * 9 7 5 13 13 C 1.46905 * 110.99790 * 72.43939 * 3 2 1 14 14 C 1.50708 * 109.46997 * 199.46484 * 13 3 2 15 15 C 1.38875 * 120.33678 * 84.21723 * 14 13 3 16 16 C 1.38300 * 118.50857 * 179.97438 * 15 14 13 17 17 C 1.39134 * 119.09437 * 0.02562 * 16 15 14 18 18 N 1.39001 * 119.70641 * 179.97438 * 17 16 15 19 19 N 1.32402 * 120.58765 * 0.02562 * 17 16 15 20 20 C 1.31972 * 121.62493 * 359.68727 * 19 17 16 21 21 H 1.08993 * 109.47567 * 61.23659 * 1 2 3 22 22 H 1.09000 * 109.47074 * 181.23528 * 1 2 3 23 23 H 1.09004 * 109.47208 * 301.23543 * 1 2 3 24 24 H 1.08994 * 109.47068 * 240.00279 * 2 1 3 25 25 H 1.09000 * 109.47234 * 119.99584 * 2 1 3 26 26 H 1.08997 * 109.47355 * 186.04497 * 4 3 2 27 27 H 1.08999 * 109.47367 * 306.04837 * 4 3 2 28 28 H 0.96999 * 120.00405 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.47599 * 319.46091 * 13 3 2 30 30 H 1.08997 * 109.47399 * 79.46531 * 13 3 2 31 31 H 1.08007 * 120.74860 * 0.02562 * 15 14 13 32 32 H 1.07997 * 120.45286 * 179.97438 * 16 15 14 33 33 H 0.96996 * 120.00044 * 0.02562 * 18 17 16 34 34 H 0.96998 * 120.00149 * 179.97438 * 18 17 16 35 35 H 1.07995 * 119.57214 * 180.28882 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4355 1.4428 -0.3869 5 6 3.5816 1.0109 -1.8234 6 1 2.7100 0.7219 -2.3917 7 6 4.8282 0.9847 -2.4119 8 7 4.9558 0.6082 -3.6655 9 14 6.3360 1.4838 -1.4286 10 1 6.9038 0.2897 -0.7527 11 1 7.3523 2.0656 -2.3419 12 1 5.9508 2.4931 -0.4097 13 6 1.8049 2.0192 1.3076 14 6 1.8594 3.5175 1.1542 15 6 0.7302 4.2238 0.7609 16 6 0.8225 5.5978 0.6326 17 6 2.0368 6.2221 0.8997 18 7 2.1440 7.6023 0.7742 19 7 3.0915 5.5133 1.2715 20 6 3.0309 4.2020 1.4075 21 1 -0.3634 0.4945 -0.9008 22 1 -0.3633 -1.0274 0.0222 23 1 -0.3634 0.5329 0.8787 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8013 2.4636 -0.2755 27 1 4.0147 0.7774 0.2533 28 1 5.8328 0.5894 -4.0795 29 1 0.8288 1.7291 1.6963 30 1 2.5824 1.6965 2.0000 31 1 -0.1995 3.7118 0.5606 32 1 -0.0361 6.1780 0.3283 33 1 1.3742 8.1258 0.5019 34 1 2.9884 8.0421 0.9598 35 1 3.9104 3.6570 1.7170 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050816427.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:38 Heat of formation + Delta-G solvation = 40.347311 kcal Electronic energy + Delta-G solvation = -16530.072672 eV Core-core repulsion = 13948.942624 eV Total energy + Delta-G solvation = -2581.130048 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.92748 -37.13408 -34.49516 -32.57939 -32.08282 -30.68022 -29.50473 -27.11223 -24.51954 -23.31494 -22.03483 -21.56916 -19.63463 -17.28718 -17.18883 -16.77960 -15.43868 -14.86629 -14.68611 -14.43701 -13.97757 -13.71558 -13.66678 -13.19330 -12.65385 -12.51152 -12.29153 -11.74101 -11.48409 -11.21990 -11.01561 -10.69871 -10.53216 -10.36985 -9.93865 -9.78478 -9.42339 -9.18174 -9.10821 -8.53342 -7.56830 -7.31487 -6.01441 -3.97919 1.60315 1.80253 3.31471 3.39627 3.42964 3.69029 4.20066 4.46242 4.91697 4.94931 5.24468 5.30319 5.32817 5.49712 5.61199 5.69877 5.78881 5.94831 6.00852 6.07079 6.15639 6.32134 6.36841 6.67214 6.71081 6.77125 6.90970 6.95111 7.04806 7.43651 7.59035 7.67207 7.95997 8.10975 8.50394 8.70269 9.07262 9.60973 11.11717 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.008896 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.812813 B = 3146.837368 C = 4139.316865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 N -0.523 5.523 4 C 0.160 3.840 5 C -0.506 4.506 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.872 3.128 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.098 3.902 14 C -0.167 4.167 15 C -0.013 4.013 16 C -0.242 4.242 17 C 0.391 3.609 18 N -0.859 5.859 19 N -0.546 5.546 20 C 0.155 3.845 21 H 0.059 0.941 22 H 0.048 0.952 23 H 0.044 0.956 24 H 0.091 0.909 25 H 0.018 0.982 26 H 0.031 0.969 27 H -0.018 1.018 28 H 0.263 0.737 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.404 0.596 34 H 0.400 0.600 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.414 8.026 11.143 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 N -0.247 5.247 4 C 0.034 3.966 5 C -0.545 4.545 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.699 3.301 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.190 1.190 13 C -0.030 4.030 14 C -0.172 4.172 15 C -0.039 4.039 16 C -0.266 4.266 17 C 0.155 3.845 18 N -0.403 5.403 19 N -0.264 5.264 20 C -0.002 4.002 21 H 0.079 0.921 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.109 0.891 25 H 0.036 0.964 26 H 0.049 0.951 27 H 0.000 1.000 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.233 0.767 34 H 0.228 0.772 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.773 8.631 10.812 15.869 hybrid contribution 0.700 -0.208 0.639 0.970 sum -7.073 8.423 11.450 15.877 Atomic orbital electron populations 1.21801 0.96468 1.00276 1.01603 1.22014 0.94327 0.89772 1.01248 1.61987 1.21709 1.16331 1.24663 1.20220 0.83355 0.96262 0.96757 1.21036 0.94767 1.43956 0.94693 0.90161 1.24889 0.98673 0.94966 0.94780 1.69891 1.23819 1.48442 1.11926 0.86907 0.83353 0.79314 0.80519 1.20369 1.21215 1.18961 1.20876 1.00554 0.89743 0.91876 1.20484 0.94628 0.96785 1.05307 1.21100 0.98284 0.92604 0.91929 1.21237 0.97707 0.95751 1.11938 1.18321 0.89534 0.85636 0.91055 1.42099 1.16346 1.03379 1.78481 1.67128 1.29792 1.08792 1.20647 1.22259 0.96577 0.88289 0.93073 0.92145 0.93287 0.93710 0.89054 0.96370 0.95085 1.00001 0.92745 0.90861 0.94878 0.85174 0.85752 0.76710 0.77153 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 10.00 37.16 0.37 -1.80 16 2 C 0.05 1.02 5.52 -3.83 -0.02 1.00 16 3 N -0.52 -10.79 4.37 -237.52 -1.04 -11.83 16 4 C 0.16 3.91 3.62 -4.97 -0.02 3.89 16 5 C -0.51 -14.53 8.83 -34.44 -0.30 -14.83 16 6 H 0.08 2.50 7.50 -52.49 -0.39 2.10 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 9 Si 0.87 22.02 27.47 -169.99 -4.67 17.35 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 13 C 0.10 1.66 4.98 -4.97 -0.02 1.64 16 14 C -0.17 -2.85 5.03 -104.46 -0.53 -3.37 16 15 C -0.01 -0.19 9.87 -39.32 -0.39 -0.58 16 16 C -0.24 -3.41 9.94 -39.23 -0.39 -3.80 16 17 C 0.39 5.95 7.75 -155.02 -1.20 4.75 16 18 N -0.86 -9.48 9.07 31.13 0.28 -9.19 16 19 N -0.55 -9.64 10.39 -12.44 -0.13 -9.77 16 20 C 0.16 2.77 9.58 -17.57 -0.17 2.60 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.60 6.53 -51.93 -0.34 0.26 16 24 H 0.09 1.97 6.58 -51.93 -0.34 1.63 16 25 H 0.02 0.32 8.05 -51.93 -0.42 -0.10 16 26 H 0.03 0.79 5.42 -51.93 -0.28 0.50 16 27 H -0.02 -0.43 7.55 -51.93 -0.39 -0.82 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.07 1.07 6.25 -51.93 -0.32 0.75 16 30 H 0.03 0.55 7.91 -51.93 -0.41 0.14 16 31 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.40 3.20 8.82 -40.82 -0.36 2.84 16 34 H 0.40 4.07 8.95 -40.82 -0.37 3.70 16 35 H 0.15 2.54 8.01 -52.49 -0.42 2.12 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -32.70 288.89 -8.10 -40.80 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.91 Total: 4.11 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.77 Total: -8.60 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.11 Total: -58.02 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.70 -8.10 -40.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050816427.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.150 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds