Wall clock time and date at job start Sun Mar 29 2020 22:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47054 * 2 1 4 4 C 1.46898 * 111.00251 * 196.38894 * 3 2 1 5 5 C 1.50706 * 109.46473 * 66.04831 * 4 3 2 6 6 H 1.07994 * 120.00177 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99707 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00254 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99929 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47291 * 90.00188 * 9 7 5 11 11 H 1.48508 * 109.46868 * 209.99757 * 9 7 5 12 12 H 1.48498 * 109.47289 * 329.99571 * 9 7 5 13 13 C 1.46905 * 110.99790 * 72.43939 * 3 2 1 14 14 C 1.50708 * 109.46997 * 199.46484 * 13 3 2 15 15 C 1.38875 * 120.33678 * 84.21723 * 14 13 3 16 16 C 1.38300 * 118.50857 * 179.97438 * 15 14 13 17 17 C 1.39134 * 119.09437 * 0.02562 * 16 15 14 18 18 N 1.39001 * 119.70641 * 179.97438 * 17 16 15 19 19 N 1.32402 * 120.58765 * 0.02562 * 17 16 15 20 20 C 1.31972 * 121.62493 * 359.68727 * 19 17 16 21 21 H 1.08993 * 109.47567 * 61.23659 * 1 2 3 22 22 H 1.09000 * 109.47074 * 181.23528 * 1 2 3 23 23 H 1.09004 * 109.47208 * 301.23543 * 1 2 3 24 24 H 1.08994 * 109.47068 * 240.00279 * 2 1 3 25 25 H 1.09000 * 109.47234 * 119.99584 * 2 1 3 26 26 H 1.08997 * 109.47355 * 186.04497 * 4 3 2 27 27 H 1.08999 * 109.47367 * 306.04837 * 4 3 2 28 28 H 0.96999 * 120.00405 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.47599 * 319.46091 * 13 3 2 30 30 H 1.08997 * 109.47399 * 79.46531 * 13 3 2 31 31 H 1.08007 * 120.74860 * 0.02562 * 15 14 13 32 32 H 1.07997 * 120.45286 * 179.97438 * 16 15 14 33 33 H 0.96996 * 120.00044 * 0.02562 * 18 17 16 34 34 H 0.96998 * 120.00149 * 179.97438 * 18 17 16 35 35 H 1.07995 * 119.57214 * 180.28882 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4355 1.4428 -0.3869 5 6 3.5816 1.0109 -1.8234 6 1 2.7100 0.7219 -2.3917 7 6 4.8282 0.9847 -2.4119 8 7 4.9558 0.6082 -3.6655 9 14 6.3360 1.4838 -1.4286 10 1 6.9038 0.2897 -0.7527 11 1 7.3523 2.0656 -2.3419 12 1 5.9508 2.4931 -0.4097 13 6 1.8049 2.0192 1.3076 14 6 1.8594 3.5175 1.1542 15 6 0.7302 4.2238 0.7609 16 6 0.8225 5.5978 0.6326 17 6 2.0368 6.2221 0.8997 18 7 2.1440 7.6023 0.7742 19 7 3.0915 5.5133 1.2715 20 6 3.0309 4.2020 1.4075 21 1 -0.3634 0.4945 -0.9008 22 1 -0.3633 -1.0274 0.0222 23 1 -0.3634 0.5329 0.8787 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8013 2.4636 -0.2755 27 1 4.0147 0.7774 0.2533 28 1 5.8328 0.5894 -4.0795 29 1 0.8288 1.7291 1.6963 30 1 2.5824 1.6965 2.0000 31 1 -0.1995 3.7118 0.5606 32 1 -0.0361 6.1780 0.3283 33 1 1.3742 8.1258 0.5019 34 1 2.9884 8.0421 0.9598 35 1 3.9104 3.6570 1.7170 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050816427.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:38 Heat of formation + Delta-G solvation = 16.321045 kcal Electronic energy + Delta-G solvation = -16531.114529 eV Core-core repulsion = 13948.942624 eV Total energy + Delta-G solvation = -2582.171905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11549 -38.65621 -35.63544 -34.69712 -33.31906 -32.01340 -31.07972 -28.75130 -25.98175 -24.51030 -23.80705 -22.84969 -21.20756 -19.01971 -18.36898 -18.19405 -16.88724 -16.47004 -16.07109 -15.85999 -15.47977 -15.13719 -14.92409 -14.57000 -14.44928 -14.09962 -13.78040 -13.22633 -12.91289 -12.72956 -12.54816 -12.48855 -12.01762 -11.87420 -11.67540 -11.43588 -11.25842 -10.78691 -10.57472 -10.32650 -8.98167 -8.61442 -8.28468 -6.29724 0.40886 0.61883 1.30666 1.34147 1.44267 2.33101 2.70957 2.95739 3.06152 3.47954 3.78244 4.02921 4.15342 4.29263 4.33223 4.48088 4.57335 4.59606 4.75320 4.77588 4.91431 4.96966 5.06712 5.11885 5.19048 5.34014 5.47310 5.53749 5.61331 5.78718 6.03942 6.45802 6.47784 6.62322 6.70194 6.76973 7.33456 7.42837 8.88154 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.008896 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.812813 B = 3146.837368 C = 4139.316865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.053 3.947 3 N -0.536 5.536 4 C 0.173 3.827 5 C -0.509 4.509 6 H 0.040 0.960 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.938 3.062 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.253 1.253 13 C 0.103 3.897 14 C -0.185 4.185 15 C -0.018 4.018 16 C -0.238 4.238 17 C 0.380 3.620 18 N -0.842 5.842 19 N -0.574 5.574 20 C 0.134 3.866 21 H 0.047 0.953 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.026 0.974 27 H -0.017 1.017 28 H 0.265 0.735 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.420 0.580 34 H 0.405 0.595 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 9.230 12.906 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.075 4.075 3 N -0.261 5.261 4 C 0.046 3.954 5 C -0.548 4.548 6 H 0.058 0.942 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.762 3.238 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.177 1.177 13 C -0.025 4.025 14 C -0.191 4.191 15 C -0.044 4.044 16 C -0.263 4.263 17 C 0.142 3.858 18 N -0.388 5.388 19 N -0.293 5.293 20 C -0.022 4.022 21 H 0.066 0.934 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.001 0.999 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.055 0.945 31 H 0.169 0.831 32 H 0.176 0.824 33 H 0.252 0.748 34 H 0.234 0.766 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.793 9.861 12.591 18.251 hybrid contribution 0.895 -0.522 0.054 1.038 sum -7.898 9.338 12.645 17.592 Atomic orbital electron populations 1.21707 0.93285 1.01933 1.02072 1.22020 0.96909 0.88688 0.99894 1.61901 1.19035 1.17613 1.27505 1.19907 0.86127 0.95408 0.93955 1.21288 0.93507 1.43267 0.96697 0.94221 1.25773 1.02144 0.95089 0.95794 1.70040 1.24784 1.50219 1.13881 0.85840 0.79114 0.79621 0.79197 1.18918 1.20921 1.17690 1.20932 1.02142 0.89614 0.89839 1.20539 0.95176 0.96747 1.06606 1.21415 0.98501 0.93271 0.91227 1.21606 0.98350 0.95710 1.10594 1.18711 0.89554 0.86983 0.90577 1.42084 1.17401 1.02020 1.77283 1.67096 1.31196 1.08936 1.22050 1.22289 0.96937 0.88787 0.94228 0.93424 0.91207 0.91260 0.93069 0.95012 0.95644 0.99920 0.92567 0.88023 0.94544 0.83133 0.82404 0.74792 0.76567 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 10.00 71.98 0.72 -3.00 16 2 C 0.05 1.94 5.52 86.30 0.48 2.42 16 3 N -0.54 -21.80 4.37 -905.36 -3.96 -25.76 16 4 C 0.17 8.48 3.62 85.56 0.31 8.79 16 5 C -0.51 -30.09 8.83 25.60 0.23 -29.86 16 6 H 0.04 2.60 7.50 -2.91 -0.02 2.58 16 7 C 0.01 0.54 5.47 84.66 0.46 1.00 16 8 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 9 Si 0.94 45.79 27.47 68.60 1.88 47.68 16 10 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 13 C 0.10 3.28 4.98 85.56 0.43 3.71 16 14 C -0.19 -6.03 5.03 -19.76 -0.10 -6.13 16 15 C -0.02 -0.50 9.87 22.44 0.22 -0.28 16 16 C -0.24 -6.04 9.94 22.50 0.22 -5.81 16 17 C 0.38 10.76 7.75 133.06 1.03 11.79 16 18 N -0.84 -16.45 9.07 -55.43 -0.50 -16.96 16 19 N -0.57 -19.69 10.39 -193.27 -2.01 -21.70 16 20 C 0.13 4.70 9.58 84.62 0.81 5.51 16 21 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 22 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.07 1.61 6.53 -2.38 -0.02 1.60 16 24 H 0.05 2.28 6.58 -2.39 -0.02 2.26 16 25 H 0.03 1.07 8.05 -2.39 -0.02 1.05 16 26 H 0.03 1.28 5.42 -2.39 -0.01 1.27 16 27 H -0.02 -0.81 7.55 -2.39 -0.02 -0.83 16 28 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.10 2.64 6.25 -2.39 -0.01 2.62 16 30 H 0.04 1.14 7.91 -2.39 -0.02 1.13 16 31 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.42 5.33 8.82 -92.71 -0.82 4.51 16 34 H 0.40 7.36 8.95 -92.71 -0.83 6.53 16 35 H 0.14 4.89 8.01 -2.91 -0.02 4.86 16 Total: -1.00 -72.35 288.89 -0.08 -72.43 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -0.60 Total: 16.47 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 4.81 Total: -11.87 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -6.17 Total: -124.70 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.68 kcal Total: -72.35 -0.08 -72.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050816427.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.752 kcal (2) G-P(sol) polarization free energy of solvation -72.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds