Wall clock time and date at job start Sun Mar 29 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47038 * 2 1 4 4 C 1.46894 * 111.00006 * 299.20103 * 3 2 1 5 5 C 1.50699 * 109.47029 * 293.48577 * 4 3 2 6 6 H 1.08004 * 120.00306 * 354.96475 * 5 4 3 7 7 C 1.37879 * 120.00304 * 174.96369 * 5 4 3 8 8 N 1.31516 * 119.99747 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00359 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47603 * 89.99929 * 9 7 5 11 11 H 1.48499 * 109.47074 * 210.00132 * 9 7 5 12 12 H 1.48497 * 109.46768 * 329.99377 * 9 7 5 13 13 C 1.46904 * 110.99938 * 63.15684 * 3 2 1 14 14 C 1.50693 * 109.47408 * 66.04601 * 13 3 2 15 15 C 1.38349 * 120.44947 * 260.00054 * 14 13 3 16 16 C 1.38837 * 118.50356 * 180.22968 * 15 14 13 17 17 C 1.38066 * 119.32812 * 359.51959 * 16 15 14 18 18 N 1.31937 * 120.85487 * 0.48943 * 17 16 15 19 19 C 1.32420 * 121.62505 * 359.74529 * 18 17 16 20 20 N 1.39003 * 119.70860 * 180.02562 * 19 18 17 21 21 H 1.09001 * 109.47057 * 180.52171 * 1 2 3 22 22 H 1.09004 * 109.47355 * 300.52333 * 1 2 3 23 23 H 1.08998 * 109.47156 * 60.52145 * 1 2 3 24 24 H 1.08996 * 109.47118 * 239.99542 * 2 1 3 25 25 H 1.08998 * 109.46719 * 119.99615 * 2 1 3 26 26 H 1.08996 * 109.47287 * 53.48316 * 4 3 2 27 27 H 1.08999 * 109.47301 * 173.48769 * 4 3 2 28 28 H 0.97000 * 119.99863 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.46987 * 306.04228 * 13 3 2 30 30 H 1.09004 * 109.46772 * 186.04916 * 13 3 2 31 31 H 1.07995 * 120.74787 * 359.95450 * 15 14 13 32 32 H 1.08001 * 120.33651 * 179.74681 * 16 15 14 33 33 H 1.08006 * 119.57286 * 180.24935 * 17 16 15 34 34 H 0.96999 * 120.00141 * 180.02562 * 20 19 18 35 35 H 0.97003 * 120.00234 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5643 2.1044 -1.1971 5 6 2.2116 1.5058 -2.4193 6 1 2.9540 0.7289 -2.3116 7 6 1.8559 1.9499 -3.6752 8 7 0.9514 2.8955 -3.8066 9 14 2.6576 1.2074 -5.1903 10 1 1.8625 0.0404 -5.6496 11 1 2.7122 2.2251 -6.2704 12 1 4.0356 0.7668 -4.8554 13 6 1.6113 2.0878 1.2237 14 6 2.2963 1.4654 2.4129 15 6 1.6218 0.5660 3.2192 16 6 2.2903 0.0207 4.3070 17 6 3.6016 0.3811 4.5449 18 7 4.2202 1.2414 3.7588 19 6 3.6156 1.7868 2.7145 20 7 4.3054 2.6885 1.9125 21 1 -0.3633 -1.0276 0.0094 22 1 -0.3634 0.5220 0.8853 23 1 -0.3633 0.5057 -0.8946 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.4809 2.0200 -1.2816 27 1 1.8418 3.1554 -1.1169 28 1 0.7014 3.2082 -4.6901 29 1 0.5308 2.0091 1.3444 30 1 1.8931 3.1382 1.1506 31 1 0.5968 0.2977 3.0098 32 1 1.7907 -0.6811 4.9584 33 1 4.1267 -0.0438 5.3877 34 1 3.8665 3.0908 1.1467 35 1 5.2258 2.9154 2.1185 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052727892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:41 Heat of formation + Delta-G solvation = 38.933261 kcal Electronic energy + Delta-G solvation = -16737.161239 eV Core-core repulsion = 14155.969873 eV Total energy + Delta-G solvation = -2581.191366 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05590 -37.17415 -34.39966 -32.93618 -32.05758 -29.71797 -29.08208 -27.07348 -24.85812 -23.20810 -22.64410 -21.61373 -19.25315 -17.28037 -17.09085 -16.24780 -15.14655 -14.97897 -14.85789 -14.57405 -14.19598 -13.66299 -13.59174 -12.91878 -12.76811 -12.48183 -11.90226 -11.61414 -11.30091 -11.14331 -10.93619 -10.68723 -10.57873 -10.52414 -10.07782 -9.76928 -9.36818 -9.25773 -9.09033 -8.45731 -7.47247 -7.18266 -6.05091 -4.06081 1.55504 1.77567 3.29867 3.36546 3.40906 3.90313 4.20184 4.42100 4.89993 5.03128 5.16125 5.30219 5.32673 5.45152 5.67564 5.76173 5.83026 5.95858 6.03978 6.16529 6.17889 6.34779 6.49086 6.63015 6.69602 6.90561 6.92349 7.25997 7.41742 7.64100 7.78448 7.81523 8.05709 8.17763 8.52465 8.57578 9.02547 9.58442 11.05313 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035996 B = 0.006412 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.685447 B = 4366.077512 C = 4667.332884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.063 3.937 3 N -0.529 5.529 4 C 0.187 3.813 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.095 3.905 14 C -0.180 4.180 15 C -0.034 4.034 16 C -0.243 4.243 17 C 0.138 3.862 18 N -0.555 5.555 19 C 0.424 3.576 20 N -0.841 5.841 21 H 0.046 0.954 22 H 0.043 0.957 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.004 0.996 27 H 0.023 0.977 28 H 0.261 0.739 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.416 0.584 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 -3.232 13.044 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.065 4.065 3 N -0.253 5.253 4 C 0.062 3.938 5 C -0.542 4.542 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.034 4.034 14 C -0.187 4.187 15 C -0.061 4.061 16 C -0.266 4.266 17 C -0.020 4.020 18 N -0.274 5.274 19 C 0.185 3.815 20 N -0.383 5.383 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.022 0.978 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.249 0.751 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.469 -2.890 13.035 13.578 hybrid contribution -1.269 -0.378 -1.296 1.853 sum 1.200 -3.268 11.739 12.244 Atomic orbital electron populations 1.22387 0.99461 1.00879 1.01966 1.21912 0.91988 0.91353 1.01269 1.62416 1.59283 1.02034 1.01532 1.19812 0.94738 0.93441 0.85806 1.21132 1.22400 1.20794 0.89916 0.91973 1.24969 0.95260 0.95236 0.99072 1.69953 1.31794 1.28752 1.23376 0.86535 0.79856 0.78758 0.82506 1.20788 1.21314 1.19828 1.20834 0.96627 0.97247 0.88674 1.20191 0.94566 1.03642 1.00339 1.21219 0.99361 0.92858 0.92614 1.21670 0.97028 1.06456 1.01479 1.22222 0.91769 0.91936 0.96059 1.67159 1.38858 1.14476 1.06880 1.18126 0.87934 0.87767 0.87680 1.42335 1.16334 1.47651 1.32002 0.93495 0.93792 0.91192 0.90308 0.93003 0.97810 0.95865 0.92973 0.94305 0.91179 0.85689 0.85813 0.83522 0.75112 0.77461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 9.26 37.16 0.34 -2.98 16 2 C 0.06 1.22 5.64 -3.82 -0.02 1.20 16 3 N -0.53 -10.78 4.69 -237.52 -1.11 -11.89 16 4 C 0.19 4.59 4.50 -4.98 -0.02 4.57 16 5 C -0.50 -13.67 8.41 -34.44 -0.29 -13.96 16 6 H 0.06 1.70 7.33 -52.48 -0.38 1.32 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 9 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.09 1.65 4.21 -4.98 -0.02 1.63 16 14 C -0.18 -2.89 4.60 -104.27 -0.48 -3.37 16 15 C -0.03 -0.49 8.81 -39.32 -0.35 -0.83 16 16 C -0.24 -3.08 10.10 -39.42 -0.40 -3.48 16 17 C 0.14 1.84 11.17 -17.57 -0.20 1.64 16 18 N -0.56 -8.79 10.39 -12.44 -0.13 -8.92 16 19 C 0.42 6.91 7.73 -155.02 -1.20 5.71 16 20 N -0.84 -12.41 8.99 31.12 0.28 -12.13 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.71 6.11 -51.93 -0.32 0.39 16 23 H 0.07 1.44 6.31 -51.93 -0.33 1.11 16 24 H 0.08 1.67 6.97 -51.93 -0.36 1.31 16 25 H 0.05 0.93 6.47 -51.93 -0.34 0.60 16 26 H 0.00 0.11 6.01 -51.93 -0.31 -0.20 16 27 H 0.02 0.60 7.92 -51.93 -0.41 0.19 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.04 0.67 5.98 -51.93 -0.31 0.36 16 30 H 0.07 1.20 6.89 -51.93 -0.36 0.84 16 31 H 0.13 1.60 7.84 -52.49 -0.41 1.19 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.42 6.35 7.04 -40.82 -0.29 6.06 16 35 H 0.40 5.11 8.95 -40.82 -0.37 4.74 16 LS Contribution 284.52 15.07 4.29 4.29 Total: -1.00 -29.59 284.52 -8.28 -37.87 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.59 Total: 8.16 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.73 Total: -8.43 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.23 Total: -58.24 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.59 -8.28 -37.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052727892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.802 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds