Wall clock time and date at job start Sun Mar 29 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47038 * 2 1 4 4 C 1.46894 * 111.00006 * 299.20103 * 3 2 1 5 5 C 1.50699 * 109.47029 * 293.48577 * 4 3 2 6 6 H 1.08004 * 120.00306 * 354.96475 * 5 4 3 7 7 C 1.37879 * 120.00304 * 174.96369 * 5 4 3 8 8 N 1.31516 * 119.99747 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00359 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47603 * 89.99929 * 9 7 5 11 11 H 1.48499 * 109.47074 * 210.00132 * 9 7 5 12 12 H 1.48497 * 109.46768 * 329.99377 * 9 7 5 13 13 C 1.46904 * 110.99938 * 63.15684 * 3 2 1 14 14 C 1.50693 * 109.47408 * 66.04601 * 13 3 2 15 15 C 1.38349 * 120.44947 * 260.00054 * 14 13 3 16 16 C 1.38837 * 118.50356 * 180.22968 * 15 14 13 17 17 C 1.38066 * 119.32812 * 359.51959 * 16 15 14 18 18 N 1.31937 * 120.85487 * 0.48943 * 17 16 15 19 19 C 1.32420 * 121.62505 * 359.74529 * 18 17 16 20 20 N 1.39003 * 119.70860 * 180.02562 * 19 18 17 21 21 H 1.09001 * 109.47057 * 180.52171 * 1 2 3 22 22 H 1.09004 * 109.47355 * 300.52333 * 1 2 3 23 23 H 1.08998 * 109.47156 * 60.52145 * 1 2 3 24 24 H 1.08996 * 109.47118 * 239.99542 * 2 1 3 25 25 H 1.08998 * 109.46719 * 119.99615 * 2 1 3 26 26 H 1.08996 * 109.47287 * 53.48316 * 4 3 2 27 27 H 1.08999 * 109.47301 * 173.48769 * 4 3 2 28 28 H 0.97000 * 119.99863 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.46987 * 306.04228 * 13 3 2 30 30 H 1.09004 * 109.46772 * 186.04916 * 13 3 2 31 31 H 1.07995 * 120.74787 * 359.95450 * 15 14 13 32 32 H 1.08001 * 120.33651 * 179.74681 * 16 15 14 33 33 H 1.08006 * 119.57286 * 180.24935 * 17 16 15 34 34 H 0.96999 * 120.00141 * 180.02562 * 20 19 18 35 35 H 0.97003 * 120.00234 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5643 2.1044 -1.1971 5 6 2.2116 1.5058 -2.4193 6 1 2.9540 0.7289 -2.3116 7 6 1.8559 1.9499 -3.6752 8 7 0.9514 2.8955 -3.8066 9 14 2.6576 1.2074 -5.1903 10 1 1.8625 0.0404 -5.6496 11 1 2.7122 2.2251 -6.2704 12 1 4.0356 0.7668 -4.8554 13 6 1.6113 2.0878 1.2237 14 6 2.2963 1.4654 2.4129 15 6 1.6218 0.5660 3.2192 16 6 2.2903 0.0207 4.3070 17 6 3.6016 0.3811 4.5449 18 7 4.2202 1.2414 3.7588 19 6 3.6156 1.7868 2.7145 20 7 4.3054 2.6885 1.9125 21 1 -0.3633 -1.0276 0.0094 22 1 -0.3634 0.5220 0.8853 23 1 -0.3633 0.5057 -0.8946 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.4809 2.0200 -1.2816 27 1 1.8418 3.1554 -1.1169 28 1 0.7014 3.2082 -4.6901 29 1 0.5308 2.0091 1.3444 30 1 1.8931 3.1382 1.1506 31 1 0.5968 0.2977 3.0098 32 1 1.7907 -0.6811 4.9584 33 1 4.1267 -0.0438 5.3877 34 1 3.8665 3.0908 1.1467 35 1 5.2258 2.9154 2.1185 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052727892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:41 Heat of formation + Delta-G solvation = 18.640953 kcal Electronic energy + Delta-G solvation = -16738.041180 eV Core-core repulsion = 14155.969873 eV Total energy + Delta-G solvation = -2582.071307 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21193 -38.73461 -35.53493 -34.83518 -33.45835 -31.15947 -30.47498 -28.74690 -26.36710 -24.97550 -23.80872 -22.95527 -20.82835 -18.42684 -18.33250 -18.21965 -16.85446 -16.48355 -16.10641 -15.95368 -15.69675 -14.91906 -14.88797 -14.46355 -14.27555 -13.81451 -13.50207 -13.12273 -12.97494 -12.77128 -12.66253 -12.45133 -12.29154 -11.83465 -11.62579 -11.46456 -11.25282 -10.59147 -10.45821 -10.28448 -8.89691 -8.56330 -8.16861 -6.25623 0.44116 0.68894 1.40688 1.41464 1.52616 2.41264 2.79044 3.05907 3.15584 3.52834 3.83019 3.97882 4.22521 4.27940 4.31367 4.45098 4.52560 4.66482 4.72455 4.78899 4.96341 4.99419 5.05162 5.24356 5.30572 5.38824 5.52550 5.54352 5.70171 5.86837 6.10857 6.38252 6.47570 6.67971 6.73941 6.91384 7.43548 7.44924 8.92682 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035996 B = 0.006412 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.685447 B = 4366.077512 C = 4667.332884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 N -0.532 5.532 4 C 0.203 3.797 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.102 3.898 14 C -0.201 4.201 15 C -0.036 4.036 16 C -0.234 4.234 17 C 0.133 3.867 18 N -0.574 5.574 19 C 0.405 3.595 20 N -0.841 5.841 21 H 0.071 0.929 22 H 0.060 0.940 23 H 0.034 0.966 24 H 0.054 0.946 25 H 0.070 0.930 26 H -0.018 1.018 27 H 0.002 0.998 28 H 0.263 0.737 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.411 0.589 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 -4.831 14.442 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.062 4.062 3 N -0.256 5.256 4 C 0.077 3.923 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.193 1.193 13 C -0.026 4.026 14 C -0.209 4.209 15 C -0.062 4.062 16 C -0.257 4.257 17 C -0.024 4.024 18 N -0.293 5.293 19 C 0.167 3.833 20 N -0.384 5.384 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.000 1.000 27 H 0.020 0.980 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.198 0.802 34 H 0.243 0.757 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.670 -4.498 14.456 15.373 hybrid contribution -1.322 0.081 -1.591 2.070 sum 1.349 -4.417 12.865 13.668 Atomic orbital electron populations 1.22260 0.98147 1.02198 1.00997 1.21867 0.93040 0.90417 1.00873 1.62292 1.59532 1.02510 1.01264 1.19446 0.93089 0.92546 0.87215 1.21398 1.22202 1.20528 0.91183 0.92621 1.25772 0.95770 0.95604 1.02071 1.70067 1.33097 1.30019 1.24108 0.85515 0.79006 0.78066 0.78825 1.20080 1.20866 1.19342 1.20752 0.96942 0.96936 0.87962 1.20066 0.94881 1.05375 1.00537 1.21493 1.00064 0.92021 0.92621 1.22035 0.96692 1.06033 1.00945 1.22900 0.92435 0.90846 0.96208 1.67224 1.39545 1.15382 1.07156 1.18334 0.88301 0.88379 0.88286 1.42321 1.16679 1.47612 1.31789 0.91052 0.92071 0.94680 0.92781 0.91123 1.00000 0.98011 0.92855 0.93970 0.91702 0.84186 0.82362 0.80216 0.75700 0.76707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.11 9.26 71.98 0.67 -5.45 16 2 C 0.07 2.52 5.64 86.30 0.49 3.00 16 3 N -0.53 -21.95 4.69 -905.38 -4.25 -26.19 16 4 C 0.20 10.32 4.50 85.56 0.38 10.71 16 5 C -0.51 -28.52 8.41 25.60 0.22 -28.31 16 6 H 0.06 3.10 7.33 -2.91 -0.02 3.08 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -55.03 13.29 21.45 0.28 -54.74 16 9 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 C 0.10 3.55 4.21 85.55 0.36 3.91 16 14 C -0.20 -6.21 4.60 -19.63 -0.09 -6.30 16 15 C -0.04 -0.91 8.81 22.44 0.20 -0.71 16 16 C -0.23 -5.04 10.10 22.37 0.23 -4.81 16 17 C 0.13 3.12 11.17 84.64 0.95 4.07 16 18 N -0.57 -17.15 10.39 -193.26 -2.01 -19.16 16 19 C 0.41 12.85 7.73 133.05 1.03 13.88 16 20 N -0.84 -24.97 8.99 -55.45 -0.50 -25.47 16 21 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.06 1.87 6.11 -2.38 -0.01 1.86 16 23 H 0.03 1.45 6.31 -2.39 -0.02 1.43 16 24 H 0.05 2.30 6.97 -2.39 -0.02 2.29 16 25 H 0.07 2.42 6.47 -2.39 -0.02 2.41 16 26 H -0.02 -0.97 6.01 -2.39 -0.01 -0.98 16 27 H 0.00 0.10 7.92 -2.39 -0.02 0.08 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.04 1.42 5.98 -2.39 -0.01 1.41 16 30 H 0.06 2.28 6.89 -2.38 -0.02 2.26 16 31 H 0.14 3.10 7.84 -2.91 -0.02 3.07 16 32 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.41 12.90 7.04 -92.71 -0.65 12.25 16 35 H 0.40 10.43 8.95 -92.71 -0.83 9.60 16 Total: -1.00 -63.80 284.52 0.07 -63.73 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.37 Total: 24.88 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 4.88 Total: -9.22 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -6.47 Total: -125.56 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -63.80 0.07 -63.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052727892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.370 kcal (2) G-P(sol) polarization free energy of solvation -63.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds