Wall clock time and date at job start Sun Mar 29 2020 22:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46895 * 109.47363 * 65.00439 * 3 2 1 14 14 C 1.46974 * 111.00599 * 190.23963 * 13 3 2 15 15 C 1.53396 * 109.66179 * 165.12400 * 14 13 3 16 16 N 1.46523 * 108.23904 * 49.67295 * 15 14 13 17 17 C 1.36040 * 128.67123 * 163.55145 * 16 15 14 18 18 C 1.34942 * 106.64195 * 180.18886 * 17 16 15 19 19 N 1.34369 * 108.08915 * 359.96893 * 18 17 16 20 20 C 1.29886 * 109.20167 * 359.94118 * 19 18 17 21 21 C 1.47325 * 111.00196 * 66.04229 * 13 3 2 22 22 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 23 23 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 25 25 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 26 26 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.43640 * 285.17978 * 14 13 3 29 29 H 1.09005 * 109.43821 * 45.06366 * 14 13 3 30 30 H 1.09000 * 109.70790 * 289.98719 * 15 14 13 31 31 H 1.09000 * 109.74822 * 169.37942 * 15 14 13 32 32 H 1.07996 * 126.67981 * 0.18657 * 17 16 15 33 33 H 1.07994 * 125.95437 * 179.97438 * 18 17 16 34 34 H 1.09006 * 109.73783 * 293.93171 * 21 13 3 35 35 H 1.08997 * 109.73626 * 54.63371 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 7 1.6515 2.0993 1.2552 14 6 1.9074 3.5453 1.1944 15 6 1.1671 4.2490 2.3388 16 7 1.4723 3.5423 3.5855 17 6 1.2994 3.9655 4.8668 18 6 1.7307 2.9668 5.6652 19 7 2.1548 1.9604 4.8824 20 6 2.0026 2.2950 3.6366 21 6 2.3362 1.4854 2.4062 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8295 -0.0694 -2.9455 28 1 2.9778 3.7284 1.2879 29 1 1.5551 3.9362 0.2398 30 1 0.0933 4.2213 2.1539 31 1 1.5009 5.2841 2.4118 32 1 0.8956 4.9158 5.1834 33 1 1.7342 2.9749 6.7451 34 1 1.9909 0.4596 2.5358 35 1 3.4135 1.4937 2.2409 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062251867.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:18 Heat of formation + Delta-G solvation = 68.351797 kcal Electronic energy + Delta-G solvation = -17215.992661 eV Core-core repulsion = 14636.076978 eV Total energy + Delta-G solvation = -2579.915683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.83410 -37.62605 -34.37645 -32.59933 -31.33932 -29.62211 -28.71838 -26.55022 -24.69052 -23.30938 -21.86460 -21.00753 -19.37778 -18.54422 -16.84280 -16.41319 -15.67276 -15.05206 -14.47081 -14.15333 -13.57048 -13.55338 -13.24931 -12.84392 -12.63787 -12.40018 -11.75381 -11.60009 -11.31714 -11.10448 -10.96381 -10.84790 -10.66768 -10.13887 -9.75322 -9.68744 -9.51406 -9.27696 -9.18697 -8.46794 -7.98949 -7.36741 -6.10570 -4.24676 2.45105 3.18644 3.22284 3.29794 3.32399 3.54059 4.31557 4.55405 4.92627 4.98367 5.14342 5.17287 5.40831 5.53008 5.71771 5.91697 6.02405 6.24048 6.29037 6.38878 6.45198 6.47682 6.61188 6.69972 6.97934 7.08813 7.12402 7.19339 7.45142 7.54763 7.63904 7.74355 7.98851 8.05123 8.28815 8.54536 8.82713 9.44053 10.89296 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028038 B = 0.008178 C = 0.007373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.419693 B = 3423.201259 C = 3796.491408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.217 3.783 4 H 0.044 0.956 5 C -0.553 4.553 6 H 0.058 0.942 7 C 0.073 3.927 8 N -0.882 5.882 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.535 5.535 14 C 0.047 3.953 15 C 0.108 3.892 16 N -0.452 5.452 17 C -0.068 4.068 18 C -0.039 4.039 19 N -0.500 5.500 20 C 0.227 3.773 21 C 0.140 3.860 22 H 0.039 0.961 23 H 0.027 0.973 24 H 0.046 0.954 25 H 0.096 0.904 26 H 0.035 0.965 27 H 0.263 0.737 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.099 0.901 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.476 6.598 6.729 10.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.112 3.888 4 H 0.062 0.938 5 C -0.591 4.591 6 H 0.076 0.924 7 C -0.131 4.131 8 N -0.519 5.519 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.260 5.260 14 C -0.082 4.082 15 C -0.015 4.015 16 N -0.134 5.134 17 C -0.202 4.202 18 C -0.188 4.188 19 N -0.219 5.219 20 C -0.036 4.036 21 C 0.010 3.990 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.114 0.886 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.117 0.883 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.703 5.801 6.737 10.058 hybrid contribution 1.517 1.025 -0.395 1.873 sum -3.187 6.826 6.342 9.847 Atomic orbital electron populations 1.21712 0.98732 0.98697 1.00482 1.21617 0.92377 0.98783 1.02343 1.19350 0.93426 0.91491 0.84551 0.93790 1.21685 0.92526 1.38956 1.05979 0.92429 1.24880 0.98015 0.94672 0.95511 1.69865 1.34969 1.37636 1.09456 0.86654 0.85872 0.78587 0.77285 1.20463 1.21125 1.20057 1.62665 1.56775 1.01191 1.05344 1.22202 0.98485 0.90832 0.96719 1.22216 1.01724 0.95697 0.81829 1.45426 1.46711 1.14905 1.06350 1.22391 1.11644 1.02475 0.83668 1.22294 1.05984 0.91237 0.99261 1.69948 1.22781 1.28993 1.00189 1.23814 0.99677 0.84993 0.95134 1.20668 0.99092 0.96418 0.82794 0.94189 0.95371 0.93488 0.88620 0.94655 0.92684 0.93529 0.88992 0.89730 0.89918 0.81513 0.81908 0.88313 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.80 37.16 0.36 -2.36 16 2 C -0.11 -2.54 5.16 -26.73 -0.14 -2.68 16 3 C 0.22 4.96 1.70 -68.87 -0.12 4.85 16 4 H 0.04 1.10 7.87 -51.93 -0.41 0.69 16 5 C -0.55 -13.87 7.23 -34.44 -0.25 -14.12 16 6 H 0.06 1.47 5.90 -52.49 -0.31 1.16 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -23.58 11.28 55.43 0.63 -22.95 16 9 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 13 N -0.53 -10.59 4.06 -228.60 -0.93 -11.52 16 14 C 0.05 0.81 5.14 -3.58 -0.02 0.79 16 15 C 0.11 1.53 7.25 -3.82 -0.03 1.50 16 16 N -0.45 -7.52 3.14 -113.70 -0.36 -7.87 16 17 C -0.07 -1.00 11.68 -16.86 -0.20 -1.20 16 18 C -0.04 -0.64 11.88 -17.61 -0.21 -0.85 16 19 N -0.50 -9.85 11.24 -10.58 -0.12 -9.97 16 20 C 0.23 4.41 7.76 -155.23 -1.20 3.21 16 21 C 0.14 2.83 5.17 -4.59 -0.02 2.80 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.90 7.75 -51.93 -0.40 0.50 16 25 H 0.10 2.42 5.94 -51.93 -0.31 2.11 16 26 H 0.03 0.79 6.47 -51.93 -0.34 0.45 16 27 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.05 0.87 7.54 -51.93 -0.39 0.48 16 29 H 0.09 1.50 7.83 -51.93 -0.41 1.09 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.10 2.04 6.69 -51.93 -0.35 1.69 16 35 H 0.08 1.67 5.97 -51.93 -0.31 1.36 16 LS Contribution 277.59 15.07 4.18 4.18 Total: -1.00 -28.08 277.59 -8.42 -36.51 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.89 Total: 2.51 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.92 Total: -6.27 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.78 Total: -52.32 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.08 -8.42 -36.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062251867.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.857 kcal (2) G-P(sol) polarization free energy of solvation -28.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds