Wall clock time and date at job start Sun Mar 29 2020 22:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46895 * 109.47363 * 65.00439 * 3 2 1 14 14 C 1.46974 * 111.00599 * 190.23963 * 13 3 2 15 15 C 1.53396 * 109.66179 * 165.12400 * 14 13 3 16 16 N 1.46523 * 108.23904 * 49.67295 * 15 14 13 17 17 C 1.36040 * 128.67123 * 163.55145 * 16 15 14 18 18 C 1.34942 * 106.64195 * 180.18886 * 17 16 15 19 19 N 1.34369 * 108.08915 * 359.96893 * 18 17 16 20 20 C 1.29886 * 109.20167 * 359.94118 * 19 18 17 21 21 C 1.47325 * 111.00196 * 66.04229 * 13 3 2 22 22 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 23 23 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 25 25 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 26 26 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.43640 * 285.17978 * 14 13 3 29 29 H 1.09005 * 109.43821 * 45.06366 * 14 13 3 30 30 H 1.09000 * 109.70790 * 289.98719 * 15 14 13 31 31 H 1.09000 * 109.74822 * 169.37942 * 15 14 13 32 32 H 1.07996 * 126.67981 * 0.18657 * 17 16 15 33 33 H 1.07994 * 125.95437 * 179.97438 * 18 17 16 34 34 H 1.09006 * 109.73783 * 293.93171 * 21 13 3 35 35 H 1.08997 * 109.73626 * 54.63371 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 7 1.6515 2.0993 1.2552 14 6 1.9074 3.5453 1.1944 15 6 1.1671 4.2490 2.3388 16 7 1.4723 3.5423 3.5855 17 6 1.2994 3.9655 4.8668 18 6 1.7307 2.9668 5.6652 19 7 2.1548 1.9604 4.8824 20 6 2.0026 2.2950 3.6366 21 6 2.3362 1.4854 2.4062 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8295 -0.0694 -2.9455 28 1 2.9778 3.7284 1.2879 29 1 1.5551 3.9362 0.2398 30 1 0.0933 4.2213 2.1539 31 1 1.5009 5.2841 2.4118 32 1 0.8956 4.9158 5.1834 33 1 1.7342 2.9749 6.7451 34 1 1.9909 0.4596 2.5358 35 1 3.4135 1.4937 2.2409 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062251867.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:18 Heat of formation + Delta-G solvation = 51.515210 kcal Electronic energy + Delta-G solvation = -17216.722750 eV Core-core repulsion = 14636.076978 eV Total energy + Delta-G solvation = -2580.645772 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.13452 -39.24018 -35.89392 -34.30161 -33.07709 -31.02504 -30.12161 -28.31139 -26.23990 -24.92462 -23.38135 -22.27965 -21.10643 -20.05510 -18.26984 -18.12484 -17.05824 -16.79086 -15.96589 -15.76968 -15.18379 -14.88305 -14.57479 -14.50833 -14.07436 -13.99640 -13.30423 -13.13116 -13.06992 -12.77642 -12.67350 -12.50140 -12.34798 -11.96560 -11.58691 -11.38575 -11.07900 -10.89843 -10.51842 -10.45354 -9.32976 -9.00277 -8.07651 -6.28378 1.19312 1.36495 1.40403 1.46909 1.96970 2.21628 2.38797 3.03816 3.13139 3.60239 3.75010 3.96893 4.24671 4.34794 4.50080 4.59473 4.67217 4.69844 4.73630 4.77067 4.87539 4.91512 4.98724 5.20710 5.41137 5.42502 5.44325 5.59999 5.75290 5.88355 5.97681 6.08301 6.20872 6.34899 6.45548 6.88100 7.23608 7.42421 8.88931 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028038 B = 0.008178 C = 0.007373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.419693 B = 3423.201259 C = 3796.491408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 C 0.225 3.775 4 H 0.023 0.977 5 C -0.557 4.557 6 H 0.048 0.952 7 C 0.030 3.970 8 N -0.905 5.905 9 Si 0.941 3.059 10 H -0.280 1.280 11 H -0.281 1.281 12 H -0.275 1.275 13 N -0.529 5.529 14 C 0.043 3.957 15 C 0.114 3.886 16 N -0.452 5.452 17 C -0.043 4.043 18 C -0.064 4.064 19 N -0.530 5.530 20 C 0.191 3.809 21 C 0.152 3.848 22 H 0.039 0.961 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.027 0.973 27 H 0.263 0.737 28 H 0.026 0.974 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.216 0.784 33 H 0.191 0.809 34 H 0.084 0.916 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 8.503 7.938 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.148 4.148 3 C 0.119 3.881 4 H 0.041 0.959 5 C -0.596 4.596 6 H 0.066 0.934 7 C -0.171 4.171 8 N -0.543 5.543 9 Si 0.768 3.232 10 H -0.206 1.206 11 H -0.206 1.206 12 H -0.200 1.200 13 N -0.253 5.253 14 C -0.086 4.086 15 C -0.007 4.007 16 N -0.134 5.134 17 C -0.177 4.177 18 C -0.211 4.211 19 N -0.250 5.250 20 C -0.072 4.072 21 C 0.022 3.978 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.233 0.767 33 H 0.208 0.792 34 H 0.102 0.898 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.608 7.718 7.944 12.414 hybrid contribution 1.779 0.486 -0.695 1.971 sum -3.829 8.204 7.249 11.597 Atomic orbital electron populations 1.21560 0.96216 0.99855 1.00656 1.21479 0.94582 0.98217 1.00509 1.19102 0.91985 0.91689 0.85354 0.95902 1.21907 0.93913 1.38298 1.05471 0.93367 1.25495 1.01370 0.94738 0.95520 1.69968 1.36158 1.38385 1.09823 0.85820 0.81894 0.78259 0.77227 1.20609 1.20648 1.20005 1.62590 1.56228 1.02655 1.03851 1.22300 0.97972 0.89325 0.98962 1.22338 1.02344 0.96615 0.79423 1.45622 1.45875 1.14060 1.07876 1.23144 1.08944 1.03413 0.82184 1.22892 1.06512 0.90994 1.00701 1.69862 1.23353 1.30977 1.00851 1.23379 1.02643 0.86571 0.94572 1.20318 0.97259 0.96303 0.83878 0.94159 0.93762 0.92965 0.91402 0.95407 0.92736 0.95555 0.88236 0.87865 0.86035 0.76728 0.79201 0.89791 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.80 71.98 0.71 -4.16 16 2 C -0.11 -5.04 5.16 30.59 0.16 -4.89 16 3 C 0.23 10.53 1.70 44.17 0.08 10.61 16 4 H 0.02 1.17 7.87 -2.38 -0.02 1.15 16 5 C -0.56 -28.74 7.23 25.60 0.19 -28.56 16 6 H 0.05 2.54 5.90 -2.91 -0.02 2.52 16 7 C 0.03 1.57 5.29 84.66 0.45 2.01 16 8 N -0.90 -49.42 11.28 21.45 0.24 -49.18 16 9 Si 0.94 42.56 29.54 68.60 2.03 44.58 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.53 -21.06 4.06 -877.15 -3.56 -24.62 16 14 C 0.04 1.45 5.14 86.42 0.44 1.89 16 15 C 0.11 2.84 7.25 86.51 0.63 3.47 16 16 N -0.45 -13.79 3.14 -513.64 -1.61 -15.40 16 17 C -0.04 -1.08 11.68 83.28 0.97 -0.11 16 18 C -0.06 -1.89 11.88 83.55 0.99 -0.90 16 19 N -0.53 -20.51 11.24 -187.40 -2.11 -22.62 16 20 C 0.19 7.32 7.76 138.21 1.07 8.40 16 21 C 0.15 6.32 5.17 85.57 0.44 6.77 16 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.05 1.95 7.75 -2.38 -0.02 1.93 16 25 H 0.07 3.53 5.94 -2.38 -0.01 3.51 16 26 H 0.03 1.28 6.47 -2.39 -0.02 1.27 16 27 H 0.26 13.78 8.31 -92.70 -0.77 13.01 16 28 H 0.03 0.98 7.54 -2.39 -0.02 0.96 16 29 H 0.10 3.15 7.83 -2.38 -0.02 3.13 16 30 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.22 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 34 H 0.08 3.63 6.69 -2.38 -0.02 3.62 16 35 H 0.05 2.22 5.97 -2.39 -0.01 2.21 16 Total: -1.00 -61.95 277.59 2.19 -59.76 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.07 Total: 12.95 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 6.12 Total: -5.46 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -7.04 Total: -111.82 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -61.95 2.19 -59.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062251867.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.273 kcal (2) G-P(sol) polarization free energy of solvation -61.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds