Wall clock time and date at job start Sun Mar 29 2020 22:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47158 * 2 1 4 4 C 1.50708 * 109.46815 * 119.99670 * 2 1 3 5 5 H 1.07996 * 119.99928 * 120.00349 * 4 2 1 6 6 C 1.37879 * 120.00058 * 299.99833 * 4 2 1 7 7 N 1.31512 * 119.99827 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47307 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47432 * 119.99974 * 8 6 4 11 11 H 1.48500 * 109.47369 * 239.99985 * 8 6 4 12 12 N 1.46894 * 109.46944 * 239.99334 * 2 1 3 13 13 C 1.46897 * 111.00339 * 306.04487 * 12 2 1 14 14 C 1.46893 * 110.99848 * 70.00476 * 12 2 1 15 15 C 1.50706 * 109.47185 * 164.06302 * 14 12 2 16 16 C 1.38345 * 120.45213 * 105.59476 * 15 14 12 17 17 C 1.38829 * 118.50852 * 180.02562 * 16 15 14 18 18 C 1.38067 * 119.32759 * 0.28096 * 17 16 15 19 19 N 1.31944 * 120.85385 * 359.39837 * 18 17 16 20 20 C 1.32433 * 121.62064 * 0.63623 * 19 18 17 21 21 N 1.39007 * 119.70416 * 179.67997 * 20 19 18 22 22 H 1.09003 * 109.47252 * 300.00721 * 1 2 3 23 23 H 1.09005 * 109.47050 * 60.00202 * 1 2 3 24 24 H 1.08994 * 109.47631 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00310 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.47429 * 189.71665 * 13 12 2 27 27 H 1.08993 * 109.47501 * 309.72668 * 13 12 2 28 28 H 1.09007 * 109.46611 * 69.72287 * 13 12 2 29 29 H 1.09001 * 109.47497 * 44.06112 * 14 12 2 30 30 H 1.09001 * 109.46942 * 284.06114 * 14 12 2 31 31 H 1.08003 * 120.74273 * 0.02562 * 16 15 14 32 32 H 1.08002 * 120.33754 * 179.97438 * 17 16 15 33 33 H 1.07995 * 119.57511 * 179.72520 * 18 17 16 34 34 H 0.96998 * 119.99919 * 174.74448 * 21 20 19 35 35 H 0.97003 * 119.99840 * 354.74588 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.1472 -2.2862 3.6040 10 1 3.1470 -0.1856 4.8161 11 1 1.1676 -1.5863 4.8167 12 7 2.0196 -0.6926 -1.1993 13 6 1.4343 -2.0356 -1.3076 14 6 1.7529 0.0970 -2.4089 15 6 2.5903 -0.4282 -3.5465 16 6 2.0112 -1.1747 -4.5570 17 6 2.8205 -1.6389 -5.5851 18 6 4.1704 -1.3494 -5.5663 19 7 4.6946 -0.6298 -4.5926 20 6 3.9561 -0.1695 -3.5943 21 7 4.5512 0.5793 -2.5856 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.7080 1.1611 3.4843 26 1 1.9383 -2.5888 -2.1000 27 1 1.5570 -2.5628 -0.3616 28 1 0.3729 -1.9515 -1.5416 29 1 2.0050 1.1412 -2.2241 30 1 0.6972 0.0186 -2.6686 31 1 0.9532 -1.3915 -4.5464 32 1 2.3994 -2.2248 -6.3888 33 1 4.8044 -1.7123 -6.3617 34 1 4.0038 0.9826 -1.8938 35 1 5.5138 0.6985 -2.5735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063090253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:45 Heat of formation + Delta-G solvation = 42.148701 kcal Electronic energy + Delta-G solvation = -16796.449343 eV Core-core repulsion = 14215.397408 eV Total energy + Delta-G solvation = -2581.051934 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.98221 -37.14803 -34.33773 -33.22588 -31.91459 -29.46508 -28.29199 -26.65889 -25.24128 -23.84279 -22.61305 -21.34279 -19.21449 -17.20672 -17.02949 -16.23368 -15.33658 -14.93988 -14.49626 -14.36193 -13.90217 -13.70652 -13.39105 -12.92578 -12.60702 -12.50776 -11.81101 -11.29849 -11.16799 -10.99408 -10.83369 -10.72035 -10.48178 -10.46040 -10.08729 -9.86500 -9.29954 -9.14415 -8.91391 -8.42335 -7.42507 -7.18200 -6.04515 -4.08071 1.58494 1.80476 3.27736 3.36136 3.40971 3.95271 4.23231 4.40447 4.92410 5.05026 5.20388 5.27890 5.36068 5.50206 5.72629 5.80943 6.03677 6.17693 6.25443 6.35086 6.42266 6.61293 6.65398 6.80538 6.86232 6.93718 7.08012 7.40280 7.66809 7.70487 7.81072 7.86589 8.07120 8.34332 8.54578 8.61995 8.98835 9.57396 11.02361 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038621 B = 0.006384 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.828362 B = 4384.705739 C = 4603.632961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.209 3.791 3 H 0.037 0.963 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.528 5.528 13 C 0.039 3.961 14 C 0.099 3.901 15 C -0.181 4.181 16 C -0.036 4.036 17 C -0.244 4.244 18 C 0.137 3.863 19 N -0.556 5.556 20 C 0.426 3.574 21 N -0.837 5.837 22 H 0.088 0.912 23 H 0.006 0.994 24 H 0.031 0.969 25 H 0.259 0.741 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.014 0.986 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.147 0.853 34 H 0.416 0.584 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.038 -2.033 -12.146 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 H 0.055 0.945 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.252 5.252 13 C -0.110 4.110 14 C -0.029 4.029 15 C -0.189 4.189 16 C -0.062 4.062 17 C -0.267 4.267 18 C -0.020 4.020 19 N -0.275 5.275 20 C 0.187 3.813 21 N -0.380 5.380 22 H 0.106 0.894 23 H 0.025 0.975 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.032 0.968 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.249 0.751 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.338 -1.775 -11.935 12.519 hybrid contribution -1.434 -0.396 1.070 1.832 sum 1.904 -2.170 -10.865 11.242 Atomic orbital electron populations 1.22412 1.00798 0.99466 1.00458 1.19363 0.89867 0.94302 0.86127 0.94511 1.21134 1.30407 1.12468 0.89530 0.91914 1.24923 0.95239 0.95140 0.99004 1.69889 1.37097 1.23117 1.23316 0.86478 0.78535 0.79689 0.82927 1.19779 1.21086 1.21205 1.62351 1.58853 1.02433 1.01525 1.22182 0.95545 0.91716 1.01524 1.20798 0.95649 0.97175 0.89320 1.20244 0.93910 1.05467 0.99241 1.21201 0.99637 0.93197 0.92194 1.21653 0.95330 1.07908 1.01857 1.22216 0.92881 0.92436 0.94479 1.67173 1.39679 1.16709 1.03917 1.18128 0.88108 0.88118 0.86942 1.42305 1.10556 1.56731 1.28380 0.89381 0.97527 0.95010 0.93069 0.94026 0.90787 0.96764 0.91189 0.94604 0.85774 0.85869 0.83570 0.75119 0.77467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 8.24 37.16 0.31 -3.71 16 2 C 0.21 5.00 2.30 -68.87 -0.16 4.84 16 3 H 0.04 0.95 7.86 -51.93 -0.41 0.54 16 4 C -0.50 -13.15 7.83 -34.44 -0.27 -13.42 16 5 H 0.06 1.70 7.18 -52.49 -0.38 1.32 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.53 -10.78 4.56 -237.74 -1.08 -11.86 16 13 C 0.04 0.76 8.35 60.06 0.50 1.26 16 14 C 0.10 1.75 3.77 -4.98 -0.02 1.73 16 15 C -0.18 -2.96 4.71 -104.26 -0.49 -3.45 16 16 C -0.04 -0.52 9.60 -39.32 -0.38 -0.89 16 17 C -0.24 -3.14 10.10 -39.43 -0.40 -3.54 16 18 C 0.14 1.87 11.17 -17.57 -0.20 1.67 16 19 N -0.56 -8.99 10.39 -12.44 -0.13 -9.12 16 20 C 0.43 7.10 7.73 -155.00 -1.20 5.90 16 21 N -0.84 -12.84 9.00 31.13 0.28 -12.56 16 22 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 23 H 0.01 0.12 7.06 -51.93 -0.37 -0.24 16 24 H 0.03 0.72 6.55 -51.93 -0.34 0.38 16 25 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.04 0.76 7.48 -51.93 -0.39 0.37 16 27 H 0.07 1.57 6.65 -51.93 -0.35 1.22 16 28 H 0.01 0.26 6.68 -51.93 -0.35 -0.08 16 29 H 0.07 1.22 7.00 -51.93 -0.36 0.86 16 30 H 0.04 0.62 7.04 -51.93 -0.37 0.26 16 31 H 0.12 1.58 8.04 -52.48 -0.42 1.15 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.42 6.62 7.08 -40.82 -0.29 6.33 16 35 H 0.40 5.37 8.95 -40.82 -0.37 5.01 16 LS Contribution 283.31 15.07 4.27 4.27 Total: -1.00 -28.48 283.31 -8.13 -36.61 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.67 Total: 8.98 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.40 Total: -8.15 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.31 Total: -57.73 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.48 -8.13 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063090253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.754 kcal (2) G-P(sol) polarization free energy of solvation -28.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds