Wall clock time and date at job start Sun Mar 29 2020 22:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47158 * 2 1 4 4 C 1.50708 * 109.46815 * 119.99670 * 2 1 3 5 5 H 1.07996 * 119.99928 * 120.00349 * 4 2 1 6 6 C 1.37879 * 120.00058 * 299.99833 * 4 2 1 7 7 N 1.31512 * 119.99827 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47307 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47432 * 119.99974 * 8 6 4 11 11 H 1.48500 * 109.47369 * 239.99985 * 8 6 4 12 12 N 1.46894 * 109.46944 * 239.99334 * 2 1 3 13 13 C 1.46897 * 111.00339 * 306.04487 * 12 2 1 14 14 C 1.46893 * 110.99848 * 70.00476 * 12 2 1 15 15 C 1.50706 * 109.47185 * 164.06302 * 14 12 2 16 16 C 1.38345 * 120.45213 * 105.59476 * 15 14 12 17 17 C 1.38829 * 118.50852 * 180.02562 * 16 15 14 18 18 C 1.38067 * 119.32759 * 0.28096 * 17 16 15 19 19 N 1.31944 * 120.85385 * 359.39837 * 18 17 16 20 20 C 1.32433 * 121.62064 * 0.63623 * 19 18 17 21 21 N 1.39007 * 119.70416 * 179.67997 * 20 19 18 22 22 H 1.09003 * 109.47252 * 300.00721 * 1 2 3 23 23 H 1.09005 * 109.47050 * 60.00202 * 1 2 3 24 24 H 1.08994 * 109.47631 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00310 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.47429 * 189.71665 * 13 12 2 27 27 H 1.08993 * 109.47501 * 309.72668 * 13 12 2 28 28 H 1.09007 * 109.46611 * 69.72287 * 13 12 2 29 29 H 1.09001 * 109.47497 * 44.06112 * 14 12 2 30 30 H 1.09001 * 109.46942 * 284.06114 * 14 12 2 31 31 H 1.08003 * 120.74273 * 0.02562 * 16 15 14 32 32 H 1.08002 * 120.33754 * 179.97438 * 17 16 15 33 33 H 1.07995 * 119.57511 * 179.72520 * 18 17 16 34 34 H 0.96998 * 119.99919 * 174.74448 * 21 20 19 35 35 H 0.97003 * 119.99840 * 354.74588 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.1472 -2.2862 3.6040 10 1 3.1470 -0.1856 4.8161 11 1 1.1676 -1.5863 4.8167 12 7 2.0196 -0.6926 -1.1993 13 6 1.4343 -2.0356 -1.3076 14 6 1.7529 0.0970 -2.4089 15 6 2.5903 -0.4282 -3.5465 16 6 2.0112 -1.1747 -4.5570 17 6 2.8205 -1.6389 -5.5851 18 6 4.1704 -1.3494 -5.5663 19 7 4.6946 -0.6298 -4.5926 20 6 3.9561 -0.1695 -3.5943 21 7 4.5512 0.5793 -2.5856 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.7080 1.1611 3.4843 26 1 1.9383 -2.5888 -2.1000 27 1 1.5570 -2.5628 -0.3616 28 1 0.3729 -1.9515 -1.5416 29 1 2.0050 1.1412 -2.2241 30 1 0.6972 0.0186 -2.6686 31 1 0.9532 -1.3915 -4.5464 32 1 2.3994 -2.2248 -6.3888 33 1 4.8044 -1.7123 -6.3617 34 1 4.0038 0.9826 -1.8938 35 1 5.5138 0.6985 -2.5735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063090253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:44 Heat of formation + Delta-G solvation = 23.232158 kcal Electronic energy + Delta-G solvation = -16797.269625 eV Core-core repulsion = 14215.397408 eV Total energy + Delta-G solvation = -2581.872217 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14874 -38.77685 -35.53821 -34.93217 -33.39862 -30.87937 -29.85870 -28.07926 -27.23312 -25.38267 -23.77185 -22.69342 -20.93273 -18.40865 -18.19636 -18.13523 -17.06607 -16.18532 -16.12089 -15.66400 -15.35379 -15.09413 -14.79076 -14.43400 -14.14638 -13.74748 -13.53811 -12.99862 -12.88809 -12.62378 -12.56283 -12.48266 -12.19305 -12.03927 -11.62963 -11.59150 -10.91182 -10.48209 -10.46037 -10.27597 -8.85608 -8.54013 -8.09145 -6.19027 0.45683 0.70178 1.40775 1.44026 1.54631 2.43715 2.81313 3.07874 3.20053 3.54829 3.85943 4.02720 4.25013 4.31977 4.48687 4.61301 4.67797 4.75460 4.80584 4.87242 4.92569 4.99729 5.17879 5.19434 5.30494 5.49331 5.56630 5.73044 5.81715 5.88258 6.22366 6.46836 6.52789 6.72871 6.76879 6.94788 7.46535 7.50181 8.96299 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038621 B = 0.006384 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.828362 B = 4384.705739 C = 4603.632961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.216 3.784 3 H 0.013 0.987 4 C -0.508 4.508 5 H 0.052 0.948 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.533 5.533 13 C 0.047 3.953 14 C 0.107 3.893 15 C -0.203 4.203 16 C -0.037 4.037 17 C -0.235 4.235 18 C 0.132 3.868 19 N -0.576 5.576 20 C 0.407 3.593 21 N -0.839 5.839 22 H 0.060 0.940 23 H 0.025 0.975 24 H 0.031 0.969 25 H 0.260 0.740 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.180 0.820 34 H 0.411 0.589 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 -3.225 -13.675 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.031 0.969 4 C -0.546 4.546 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.256 5.256 13 C -0.102 4.102 14 C -0.021 4.021 15 C -0.210 4.210 16 C -0.064 4.064 17 C -0.258 4.258 18 C -0.025 4.025 19 N -0.295 5.295 20 C 0.168 3.832 21 N -0.382 5.382 22 H 0.079 0.921 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.159 0.841 32 H 0.176 0.824 33 H 0.197 0.803 34 H 0.243 0.757 35 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.410 -2.974 -13.483 14.222 hybrid contribution -1.434 -0.053 1.412 2.013 sum 1.976 -3.027 -12.071 12.600 Atomic orbital electron populations 1.22225 1.00417 0.99221 0.99989 1.19108 0.89965 0.93013 0.87036 0.96946 1.21355 1.30189 1.12200 0.90884 0.92982 1.25602 0.95505 0.95807 1.01564 1.70002 1.37944 1.24153 1.23834 0.85566 0.78000 0.78623 0.79752 1.19647 1.20800 1.20839 1.62238 1.58942 1.02855 1.01561 1.22090 0.96126 0.91092 1.00853 1.20713 0.96209 0.96588 0.88586 1.20148 0.93783 1.07383 0.99719 1.21501 1.00759 0.92251 0.91850 1.22024 0.94848 1.06987 1.01935 1.22891 0.93996 0.91273 0.94346 1.67228 1.40222 1.17558 1.04475 1.18338 0.88533 0.88804 0.87491 1.42289 1.10828 1.56801 1.28243 0.92126 0.95601 0.94975 0.93060 0.92503 0.92909 0.96022 0.91784 0.94152 0.84072 0.82398 0.80290 0.75749 0.76834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.44 8.24 71.98 0.59 -6.85 16 2 C 0.22 10.42 2.30 44.17 0.10 10.52 16 3 H 0.01 0.67 7.86 -2.39 -0.02 0.65 16 4 C -0.51 -27.19 7.83 25.60 0.20 -26.99 16 5 H 0.05 2.85 7.18 -2.91 -0.02 2.83 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -51.62 11.32 21.45 0.24 -51.37 16 8 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.53 -21.63 4.56 -906.07 -4.13 -25.76 16 13 C 0.05 1.79 8.35 127.69 1.07 2.85 16 14 C 0.11 3.72 3.77 85.56 0.32 4.04 16 15 C -0.20 -6.36 4.71 -19.63 -0.09 -6.45 16 16 C -0.04 -0.97 9.60 22.44 0.22 -0.75 16 17 C -0.24 -5.16 10.10 22.37 0.23 -4.94 16 18 C 0.13 3.18 11.17 84.64 0.95 4.12 16 19 N -0.58 -17.63 10.39 -193.26 -2.01 -19.64 16 20 C 0.41 13.21 7.73 133.04 1.03 14.24 16 21 N -0.84 -25.90 9.00 -55.44 -0.50 -26.40 16 22 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 23 H 0.03 1.06 7.06 -2.38 -0.02 1.05 16 24 H 0.03 1.45 6.55 -2.39 -0.02 1.43 16 25 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.06 1.98 7.48 -2.39 -0.02 1.96 16 27 H 0.05 2.22 6.65 -2.39 -0.02 2.20 16 28 H 0.02 0.78 6.68 -2.38 -0.02 0.76 16 29 H 0.06 2.26 7.00 -2.39 -0.02 2.24 16 30 H 0.04 1.35 7.04 -2.39 -0.02 1.33 16 31 H 0.14 3.11 8.04 -2.91 -0.02 3.08 16 32 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.41 13.41 7.08 -92.71 -0.66 12.75 16 35 H 0.40 11.00 8.95 -92.71 -0.83 10.17 16 Total: -1.00 -60.31 283.31 0.31 -60.00 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.38 Total: 26.77 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.06 Total: -9.01 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -6.40 Total: -123.17 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -60.31 0.31 -60.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063090253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.230 kcal (2) G-P(sol) polarization free energy of solvation -60.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds