Wall clock time and date at job start Sun Mar 29 2020 22:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47456 * 2 1 4 4 C 1.50693 * 109.47180 * 120.00067 * 2 1 3 5 5 H 1.08002 * 119.99955 * 120.00467 * 4 2 1 6 6 C 1.37878 * 120.00026 * 299.99754 * 4 2 1 7 7 N 1.31521 * 120.00113 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00064 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47625 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47282 * 120.00434 * 8 6 4 11 11 H 1.48505 * 109.47334 * 240.00335 * 8 6 4 12 12 N 1.46898 * 109.47277 * 240.00353 * 2 1 3 13 13 C 1.46905 * 110.99746 * 306.04377 * 12 2 1 14 14 C 1.46899 * 111.00163 * 69.99569 * 12 2 1 15 15 C 1.50700 * 109.47028 * 170.00320 * 14 12 2 16 16 C 1.38886 * 120.74861 * 270.28862 * 15 14 12 17 17 C 1.38026 * 119.33120 * 180.29789 * 16 15 14 18 18 N 1.31974 * 120.85540 * 359.68539 * 17 16 15 19 19 C 1.32400 * 121.61845 * 0.02562 * 18 17 16 20 20 N 1.39009 * 119.69949 * 180.02562 * 19 18 17 21 21 C 1.38297 * 120.74853 * 89.99843 * 15 14 12 22 22 H 1.09001 * 109.47167 * 300.00018 * 1 2 3 23 23 H 1.09001 * 109.47185 * 59.99950 * 1 2 3 24 24 H 1.08999 * 109.47048 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00025 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.46915 * 183.95229 * 13 12 2 27 27 H 1.08998 * 109.47085 * 303.95469 * 13 12 2 28 28 H 1.09006 * 109.46746 * 63.95480 * 13 12 2 29 29 H 1.08996 * 109.47140 * 50.00859 * 14 12 2 30 30 H 1.08990 * 109.47446 * 289.99940 * 14 12 2 31 31 H 1.08003 * 120.33334 * 0.02562 * 16 15 14 32 32 H 1.08004 * 119.57370 * 179.69860 * 17 16 15 33 33 H 0.96994 * 119.99656 * 179.97438 * 20 19 18 34 34 H 0.96994 * 119.99820 * 359.97438 * 20 19 18 35 35 H 1.08002 * 120.45299 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1203 4.0078 9 1 3.1464 -2.2870 3.6038 10 1 3.1466 -0.1873 4.8165 11 1 1.1660 -1.5867 4.8160 12 7 2.0197 -0.6924 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7529 0.0973 -2.4090 15 6 2.4773 -0.5162 -3.5794 16 6 3.7738 -0.1299 -3.8937 17 6 4.4076 -0.7064 -4.9758 18 7 3.7998 -1.6210 -5.7078 19 6 2.5667 -2.0199 -5.4370 20 7 1.9649 -2.9866 -6.2343 21 6 1.8684 -1.4809 -4.3611 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7081 1.1609 3.4844 26 1 1.8664 -2.5520 -2.1649 27 1 1.6466 -2.5987 -0.3992 28 1 0.3555 -1.9520 -1.4399 29 1 2.1025 1.1189 -2.2604 30 1 0.6814 0.1053 -2.6088 31 1 4.2794 0.6174 -3.3000 32 1 5.4140 -0.4053 -5.2267 33 1 1.0618 -3.2822 -6.0396 34 1 2.4479 -3.3653 -6.9853 35 1 0.8625 -1.8078 -4.1425 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063090316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:50 Heat of formation + Delta-G solvation = 42.914827 kcal Electronic energy + Delta-G solvation = -16494.757730 eV Core-core repulsion = 13913.739018 eV Total energy + Delta-G solvation = -2581.018712 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.01014 -37.26796 -34.61633 -33.29549 -31.87759 -29.03011 -28.57119 -26.97934 -25.23199 -23.89503 -22.96102 -21.14270 -19.23038 -17.23662 -16.82459 -16.05007 -15.61033 -15.20588 -14.87921 -14.36152 -14.11191 -13.76856 -13.48027 -13.24046 -12.58130 -12.05764 -11.67103 -11.45930 -11.08594 -11.02777 -10.83646 -10.66154 -10.60086 -10.43647 -10.06235 -9.90332 -9.25135 -9.24005 -8.88022 -8.39316 -7.69137 -7.18234 -6.01620 -4.04997 1.52263 1.73852 3.30063 3.38094 3.43129 3.61853 4.14795 4.42675 4.81209 5.05468 5.23386 5.31189 5.37041 5.52518 5.64307 5.88530 6.02089 6.13831 6.22458 6.26321 6.36152 6.64691 6.78385 6.81104 6.86145 6.88920 7.09534 7.36076 7.43267 7.53437 7.69052 7.83333 8.10555 8.35752 8.40803 8.56713 9.01303 9.60076 11.05551 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.041735 B = 0.005514 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.735392 B = 5076.758556 C = 5135.342068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.526 5.526 13 C 0.032 3.968 14 C 0.086 3.914 15 C 0.023 3.977 16 C -0.210 4.210 17 C 0.138 3.862 18 N -0.554 5.554 19 C 0.395 3.605 20 N -0.859 5.859 21 C -0.232 4.232 22 H 0.089 0.911 23 H 0.006 0.994 24 H 0.031 0.969 25 H 0.259 0.741 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.016 0.984 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.132 0.868 32 H 0.151 0.849 33 H 0.405 0.595 34 H 0.399 0.601 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 -3.710 -13.616 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.058 0.942 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.249 5.249 13 C -0.116 4.116 14 C -0.043 4.043 15 C 0.015 3.985 16 C -0.233 4.233 17 C -0.018 4.018 18 N -0.273 5.273 19 C 0.158 3.842 20 N -0.403 5.403 21 C -0.258 4.258 22 H 0.107 0.893 23 H 0.025 0.975 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.034 0.966 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.234 0.766 34 H 0.228 0.772 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.712 -3.971 -14.076 14.725 hybrid contribution -1.281 -0.247 1.340 1.871 sum 0.431 -4.218 -12.736 13.423 Atomic orbital electron populations 1.22412 1.00796 0.99443 1.00514 1.19359 0.89810 0.94545 0.85878 0.94247 1.21132 1.30389 1.12454 0.89525 0.91897 1.24926 0.95257 0.95152 0.99002 1.69895 1.37156 1.23140 1.23296 0.86463 0.78516 0.79690 0.82873 1.19751 1.21050 1.21207 1.62375 1.58835 1.02361 1.01341 1.22297 0.95979 0.91926 1.01429 1.21079 0.96589 0.97644 0.88945 1.20147 0.93529 0.91763 0.93089 1.21755 0.95853 1.05220 1.00453 1.22293 0.98587 0.90442 0.90463 1.67099 1.09343 1.17699 1.33207 1.18276 0.88971 0.88375 0.88537 1.42118 1.18889 1.44718 1.34571 1.21213 1.02199 1.03420 0.98931 0.89280 0.97484 0.94973 0.93071 0.93628 0.90880 0.96551 0.90181 0.94490 0.84994 0.83132 0.76580 0.77206 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.22 37.16 0.31 -3.79 16 2 C 0.21 5.20 2.31 -68.87 -0.16 5.04 16 3 H 0.04 1.07 7.93 -51.93 -0.41 0.65 16 4 C -0.50 -13.47 7.91 -34.44 -0.27 -13.75 16 5 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.24 11.32 55.43 0.63 -24.61 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 N -0.53 -11.19 4.69 -237.73 -1.12 -12.31 16 13 C 0.03 0.64 8.30 60.07 0.50 1.13 16 14 C 0.09 1.54 4.73 -4.98 -0.02 1.52 16 15 C 0.02 0.38 4.90 -104.36 -0.51 -0.13 16 16 C -0.21 -3.16 9.81 -39.42 -0.39 -3.55 16 17 C 0.14 1.94 11.17 -17.57 -0.20 1.74 16 18 N -0.55 -8.32 10.39 -12.43 -0.13 -8.45 16 19 C 0.39 5.58 7.75 -155.01 -1.20 4.38 16 20 N -0.86 -8.81 9.07 31.13 0.28 -8.53 16 21 C -0.23 -3.44 7.94 -39.23 -0.31 -3.75 16 22 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 23 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 24 H 0.03 0.74 6.41 -51.93 -0.33 0.41 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.04 0.82 6.18 -51.93 -0.32 0.50 16 27 H 0.07 1.56 6.76 -51.93 -0.35 1.20 16 28 H 0.02 0.31 6.46 -51.93 -0.34 -0.03 16 29 H 0.08 1.43 7.89 -51.93 -0.41 1.02 16 30 H 0.04 0.66 7.02 -51.93 -0.36 0.29 16 31 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 32 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.40 3.21 8.82 -40.82 -0.36 2.85 16 34 H 0.40 3.56 8.95 -40.82 -0.37 3.19 16 35 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 283.70 15.07 4.28 4.28 Total: -1.00 -29.80 283.70 -8.14 -37.93 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.70 Total: 5.13 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.35 Total: -9.69 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.34 Total: -53.90 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.80 -8.14 -37.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063090316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.846 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds