Wall clock time and date at job start Sun Mar 29 2020 22:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47186 * 2 1 4 4 C 1.50704 * 109.47400 * 240.00318 * 2 1 3 5 5 H 1.07996 * 120.00045 * 240.00119 * 4 2 1 6 6 C 1.37879 * 119.99902 * 59.99493 * 4 2 1 7 7 N 1.31513 * 119.99798 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99915 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46985 * 59.99902 * 8 6 4 10 10 H 1.48497 * 109.46784 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47055 * 300.00099 * 8 6 4 12 12 N 1.46899 * 109.47472 * 120.00079 * 2 1 3 13 13 C 1.46899 * 110.99944 * 58.95393 * 12 2 1 14 14 C 1.46896 * 111.00141 * 295.00313 * 12 2 1 15 15 C 1.50701 * 109.47584 * 190.00042 * 14 12 2 16 16 C 1.38883 * 120.74166 * 269.98032 * 15 14 12 17 17 C 1.38019 * 119.32637 * 180.02562 * 16 15 14 18 18 N 1.31974 * 120.86189 * 359.96725 * 17 16 15 19 19 C 1.32404 * 121.61606 * 0.02562 * 18 17 16 20 20 N 1.38995 * 119.70176 * 179.97438 * 19 18 17 21 21 C 1.38292 * 120.75008 * 89.99146 * 15 14 12 22 22 H 1.08995 * 109.47217 * 60.00028 * 1 2 3 23 23 H 1.09001 * 109.46855 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46909 * 299.99706 * 1 2 3 25 25 H 0.97003 * 119.99310 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.47120 * 296.04767 * 13 12 2 27 27 H 1.09003 * 109.47397 * 56.04821 * 13 12 2 28 28 H 1.08994 * 109.47321 * 176.04756 * 13 12 2 29 29 H 1.08999 * 109.47659 * 69.99252 * 14 12 2 30 30 H 1.09007 * 109.46659 * 309.99605 * 14 12 2 31 31 H 1.07997 * 120.33888 * 359.97438 * 16 15 14 32 32 H 1.08003 * 119.57170 * 179.97438 * 17 16 15 33 33 H 0.97001 * 120.00591 * 0.02562 * 20 19 18 34 34 H 0.97005 * 120.00229 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.44961 * 359.96441 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2204 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6488 0.0390 2.4180 15 6 2.3680 -0.5572 3.6005 16 6 1.7964 -1.5899 4.3323 17 6 2.4806 -2.1140 5.4103 18 7 3.6669 -1.6468 5.7511 19 6 4.2451 -0.6636 5.0787 20 7 5.4954 -0.2018 5.4729 21 6 3.6119 -0.0881 3.9816 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7088 1.1614 -3.4844 26 1 0.4420 -2.0731 1.3347 27 1 1.8168 -2.5951 0.3318 28 1 1.9618 -2.5869 2.1057 29 1 0.5723 -0.0345 2.5726 30 1 1.9298 1.0869 2.3124 31 1 0.8259 -1.9785 4.0611 32 1 2.0396 -2.9169 5.9823 33 1 5.9408 -0.5999 6.2372 34 1 5.9232 0.5181 4.9832 35 1 4.0856 0.7136 3.4346 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063090319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:53 Heat of formation + Delta-G solvation = 42.919902 kcal Electronic energy + Delta-G solvation = -16481.664249 eV Core-core repulsion = 13900.645756 eV Total energy + Delta-G solvation = -2581.018492 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99994 -37.27986 -34.58941 -33.25619 -31.89741 -29.05050 -28.56824 -26.93929 -25.16934 -24.06441 -22.78363 -21.19637 -19.21989 -17.22162 -16.80328 -16.04812 -15.61557 -15.19649 -14.85614 -14.39919 -14.03284 -13.78299 -13.44664 -13.27298 -12.55953 -12.02487 -11.73895 -11.39406 -11.13925 -11.01240 -10.77917 -10.71021 -10.55799 -10.46380 -10.02406 -9.92017 -9.24782 -9.23418 -8.86694 -8.39447 -7.68085 -7.17123 -6.01906 -4.05614 1.55430 1.71329 3.32436 3.36587 3.39828 3.64561 4.15005 4.42074 4.82843 5.02376 5.26695 5.31369 5.43237 5.54537 5.55865 5.88554 6.04587 6.15456 6.23373 6.28768 6.40908 6.66721 6.75011 6.83074 6.89137 6.90288 7.10330 7.38961 7.46253 7.55740 7.70489 7.81544 8.09476 8.36400 8.41818 8.57153 8.99896 9.59321 11.05186 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038390 B = 0.005639 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.181673 B = 4964.083106 C = 5157.314098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.527 5.527 13 C 0.031 3.969 14 C 0.085 3.915 15 C 0.023 3.977 16 C -0.225 4.225 17 C 0.138 3.862 18 N -0.555 5.555 19 C 0.396 3.604 20 N -0.857 5.857 21 C -0.218 4.218 22 H 0.088 0.912 23 H 0.031 0.969 24 H 0.007 0.993 25 H 0.261 0.739 26 H 0.017 0.983 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.150 0.850 33 H 0.399 0.601 34 H 0.406 0.594 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 -1.923 13.044 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.250 5.250 13 C -0.117 4.117 14 C -0.043 4.043 15 C 0.015 3.985 16 C -0.249 4.249 17 C -0.018 4.018 18 N -0.274 5.274 19 C 0.160 3.840 20 N -0.401 5.401 21 C -0.243 4.243 22 H 0.107 0.893 23 H 0.050 0.950 24 H 0.026 0.974 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.167 0.833 33 H 0.228 0.772 34 H 0.236 0.764 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.925 -2.172 13.537 14.261 hybrid contribution -0.734 0.068 -1.493 1.665 sum 3.191 -2.104 12.044 12.636 Atomic orbital electron populations 1.22409 1.00803 0.99433 1.00558 1.19340 0.89808 0.94566 0.85813 0.94264 1.21072 1.30663 1.12518 0.89620 0.91975 1.24920 0.95217 0.95125 0.98974 1.69876 1.36997 1.23016 1.23516 0.86577 0.79224 0.79614 0.82083 1.20358 1.21386 1.20253 1.62387 1.59434 1.02032 1.01182 1.22306 0.96733 0.91088 1.01579 1.21070 0.96332 0.98097 0.88770 1.20136 0.92799 0.92222 0.93384 1.21750 1.02853 1.00884 0.99385 1.22222 0.89072 0.96701 0.93796 1.67097 1.13064 1.14339 1.32941 1.18323 0.86563 0.89583 0.89575 1.42133 1.18043 1.42797 1.37170 1.21206 0.97406 1.05933 0.99760 0.89314 0.95040 0.97351 0.92947 0.96501 0.90760 0.93544 0.94179 0.90453 0.85583 0.83292 0.77234 0.76411 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.27 37.16 0.31 -3.80 16 2 C 0.21 5.22 2.34 -68.86 -0.16 5.06 16 3 H 0.04 1.06 8.03 -51.93 -0.42 0.65 16 4 C -0.50 -13.55 7.89 -34.44 -0.27 -13.83 16 5 H 0.06 1.70 6.77 -52.49 -0.36 1.34 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.53 -11.23 4.73 -237.73 -1.13 -12.36 16 13 C 0.03 0.62 8.41 60.06 0.51 1.13 16 14 C 0.09 1.54 4.60 -4.98 -0.02 1.52 16 15 C 0.02 0.37 4.90 -104.36 -0.51 -0.14 16 16 C -0.23 -3.30 8.12 -39.42 -0.32 -3.62 16 17 C 0.14 1.91 11.17 -17.57 -0.20 1.71 16 18 N -0.56 -8.34 10.39 -12.44 -0.13 -8.47 16 19 C 0.40 5.71 7.75 -155.02 -1.20 4.51 16 20 N -0.86 -9.10 9.07 31.13 0.28 -8.82 16 21 C -0.22 -3.34 9.64 -39.23 -0.38 -3.72 16 22 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 23 H 0.03 0.73 6.48 -51.93 -0.34 0.39 16 24 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.02 0.32 6.51 -51.93 -0.34 -0.02 16 27 H 0.07 1.59 6.42 -51.93 -0.33 1.26 16 28 H 0.05 0.83 6.18 -51.93 -0.32 0.51 16 29 H 0.04 0.72 6.90 -51.93 -0.36 0.36 16 30 H 0.08 1.39 7.96 -51.93 -0.41 0.97 16 31 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.15 1.59 8.06 -52.48 -0.42 1.16 16 33 H 0.40 3.65 8.95 -40.82 -0.37 3.29 16 34 H 0.41 3.41 8.82 -40.82 -0.36 3.05 16 35 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 283.08 15.07 4.27 4.27 Total: -1.00 -29.71 283.08 -8.11 -37.82 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.67 Total: 5.59 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.34 Total: -9.67 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.34 Total: -54.23 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.71 -8.11 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063090319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.739 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds