Wall clock time and date at job start Sun Mar 29 2020 22:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47186 * 2 1 4 4 C 1.50704 * 109.47400 * 240.00318 * 2 1 3 5 5 H 1.07996 * 120.00045 * 240.00119 * 4 2 1 6 6 C 1.37879 * 119.99902 * 59.99493 * 4 2 1 7 7 N 1.31513 * 119.99798 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99915 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46985 * 59.99902 * 8 6 4 10 10 H 1.48497 * 109.46784 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47055 * 300.00099 * 8 6 4 12 12 N 1.46899 * 109.47472 * 120.00079 * 2 1 3 13 13 C 1.46899 * 110.99944 * 58.95393 * 12 2 1 14 14 C 1.46896 * 111.00141 * 295.00313 * 12 2 1 15 15 C 1.50701 * 109.47584 * 190.00042 * 14 12 2 16 16 C 1.38883 * 120.74166 * 269.98032 * 15 14 12 17 17 C 1.38019 * 119.32637 * 180.02562 * 16 15 14 18 18 N 1.31974 * 120.86189 * 359.96725 * 17 16 15 19 19 C 1.32404 * 121.61606 * 0.02562 * 18 17 16 20 20 N 1.38995 * 119.70176 * 179.97438 * 19 18 17 21 21 C 1.38292 * 120.75008 * 89.99146 * 15 14 12 22 22 H 1.08995 * 109.47217 * 60.00028 * 1 2 3 23 23 H 1.09001 * 109.46855 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46909 * 299.99706 * 1 2 3 25 25 H 0.97003 * 119.99310 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.47120 * 296.04767 * 13 12 2 27 27 H 1.09003 * 109.47397 * 56.04821 * 13 12 2 28 28 H 1.08994 * 109.47321 * 176.04756 * 13 12 2 29 29 H 1.08999 * 109.47659 * 69.99252 * 14 12 2 30 30 H 1.09007 * 109.46659 * 309.99605 * 14 12 2 31 31 H 1.07997 * 120.33888 * 359.97438 * 16 15 14 32 32 H 1.08003 * 119.57170 * 179.97438 * 17 16 15 33 33 H 0.97001 * 120.00591 * 0.02562 * 20 19 18 34 34 H 0.97005 * 120.00229 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.44961 * 359.96441 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2204 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6488 0.0390 2.4180 15 6 2.3680 -0.5572 3.6005 16 6 1.7964 -1.5899 4.3323 17 6 2.4806 -2.1140 5.4103 18 7 3.6669 -1.6468 5.7511 19 6 4.2451 -0.6636 5.0787 20 7 5.4954 -0.2018 5.4729 21 6 3.6119 -0.0881 3.9816 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7088 1.1614 -3.4844 26 1 0.4420 -2.0731 1.3347 27 1 1.8168 -2.5951 0.3318 28 1 1.9618 -2.5869 2.1057 29 1 0.5723 -0.0345 2.5726 30 1 1.9298 1.0869 2.3124 31 1 0.8259 -1.9785 4.0611 32 1 2.0396 -2.9169 5.9823 33 1 5.9408 -0.5999 6.2372 34 1 5.9232 0.5181 4.9832 35 1 4.0856 0.7136 3.4346 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063090319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:53 Heat of formation + Delta-G solvation = 22.557214 kcal Electronic energy + Delta-G solvation = -16482.547241 eV Core-core repulsion = 13900.645756 eV Total energy + Delta-G solvation = -2581.901485 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13937 -38.92934 -35.73676 -34.88283 -33.45829 -30.47627 -30.02498 -28.44598 -27.17770 -25.62479 -23.94939 -22.54837 -20.96482 -18.31962 -18.23433 -17.71859 -17.00940 -16.68692 -16.19070 -15.92691 -15.41716 -15.07454 -14.88717 -14.72632 -14.28879 -13.71121 -13.25985 -12.96781 -12.84812 -12.68820 -12.61992 -12.46043 -12.17210 -11.96344 -11.74642 -11.60916 -10.95020 -10.48306 -10.43127 -10.35889 -8.87407 -8.68081 -8.09834 -6.20413 0.42127 0.56902 1.44067 1.45131 1.52799 2.43967 2.71357 3.00434 3.19551 3.55355 3.73448 3.99122 4.27275 4.33345 4.40138 4.58912 4.67074 4.72525 4.78421 4.88603 4.90081 4.98127 5.07877 5.17032 5.20953 5.54588 5.62966 5.71869 5.78447 5.80871 6.19246 6.44616 6.47898 6.65818 6.71841 6.92390 7.41276 7.48574 8.96052 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038390 B = 0.005639 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.181673 B = 4964.083106 C = 5157.314098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.008 0.992 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.537 5.537 13 C 0.040 3.960 14 C 0.091 3.909 15 C 0.009 3.991 16 C -0.232 4.232 17 C 0.142 3.858 18 N -0.569 5.569 19 C 0.392 3.608 20 N -0.843 5.843 21 C -0.232 4.232 22 H 0.061 0.939 23 H 0.032 0.968 24 H 0.027 0.973 25 H 0.261 0.739 26 H 0.021 0.979 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.182 0.818 33 H 0.408 0.592 34 H 0.417 0.583 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 -3.007 14.094 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.108 3.892 3 H 0.026 0.974 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.261 5.261 13 C -0.109 4.109 14 C -0.037 4.037 15 C 0.000 4.000 16 C -0.255 4.255 17 C -0.014 4.014 18 N -0.288 5.288 19 C 0.154 3.846 20 N -0.388 5.388 21 C -0.258 4.258 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.199 0.801 33 H 0.238 0.762 34 H 0.248 0.752 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.374 -3.249 14.610 15.593 hybrid contribution -0.819 0.423 -1.718 1.950 sum 3.554 -2.827 12.892 13.668 Atomic orbital electron populations 1.22202 1.00132 0.99305 1.00152 1.19090 0.90178 0.92996 0.86916 0.97388 1.21336 1.30685 1.12473 0.90909 0.92650 1.25656 0.95397 0.95793 1.01713 1.70002 1.37804 1.24094 1.24056 0.85621 0.78633 0.78715 0.78698 1.19686 1.20979 1.19995 1.62243 1.59821 1.02729 1.01281 1.22229 0.97073 0.90126 1.01428 1.21007 0.96833 0.97637 0.88188 1.20020 0.93368 0.93371 0.93220 1.21877 1.03467 1.00551 0.99625 1.22750 0.88500 0.96785 0.93388 1.67218 1.13728 1.14667 1.33233 1.18496 0.87504 0.89377 0.89214 1.42121 1.16807 1.42609 1.37222 1.21284 0.97522 1.06463 1.00528 0.92004 0.94854 0.95366 0.92967 0.96007 0.92750 0.91455 0.93799 0.91068 0.84393 0.80081 0.76160 0.75169 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.57 8.27 71.98 0.60 -6.97 16 2 C 0.22 10.81 2.34 44.17 0.10 10.92 16 3 H 0.01 0.46 8.03 -2.39 -0.02 0.44 16 4 C -0.52 -28.23 7.89 25.60 0.20 -28.03 16 5 H 0.06 3.05 6.77 -2.91 -0.02 3.03 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -52.47 11.32 21.45 0.24 -52.23 16 8 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.54 -22.82 4.73 -906.05 -4.29 -27.11 16 13 C 0.04 1.53 8.41 127.69 1.07 2.61 16 14 C 0.09 3.25 4.60 85.56 0.39 3.64 16 15 C 0.01 0.27 4.90 -19.70 -0.10 0.17 16 16 C -0.23 -6.28 8.12 22.37 0.18 -6.10 16 17 C 0.14 3.52 11.17 84.62 0.95 4.47 16 18 N -0.57 -15.73 10.39 -193.27 -2.01 -17.74 16 19 C 0.39 10.59 7.75 133.06 1.03 11.62 16 20 N -0.84 -16.21 9.07 -55.43 -0.50 -16.71 16 21 C -0.23 -6.89 9.64 22.50 0.22 -6.67 16 22 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 23 H 0.03 1.53 6.48 -2.39 -0.02 1.51 16 24 H 0.03 1.18 6.75 -2.39 -0.02 1.17 16 25 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 26 H 0.02 0.81 6.51 -2.39 -0.02 0.79 16 27 H 0.05 2.30 6.42 -2.39 -0.02 2.29 16 28 H 0.07 2.31 6.18 -2.39 -0.01 2.29 16 29 H 0.04 1.52 6.90 -2.39 -0.02 1.50 16 30 H 0.07 2.58 7.96 -2.38 -0.02 2.56 16 31 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16 33 H 0.41 6.55 8.95 -92.71 -0.83 5.72 16 34 H 0.42 6.23 8.82 -92.70 -0.82 5.41 16 35 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -62.64 283.08 0.03 -62.61 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.53 Total: 18.75 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 5.10 Total: -13.19 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -6.56 Total: -113.78 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -62.64 0.03 -62.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063090319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.172 kcal (2) G-P(sol) polarization free energy of solvation -62.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds