Wall clock time and date at job start Sun Mar 29 2020 21:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38596 * 120.39961 * 2 1 4 4 C 1.38608 * 118.55687 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.40140 * 179.97438 * 4 3 2 6 6 N 1.32279 * 119.19883 * 0.02562 * 4 3 2 7 7 C 1.32498 * 120.73854 * 359.97438 * 6 4 3 8 8 N 1.38402 * 119.21540 * 180.02562 * 7 6 4 9 9 C 1.46495 * 120.00379 * 0.02562 * 8 7 6 10 10 C 1.46504 * 119.99731 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.47003 * 0.02562 * 10 8 7 12 12 C 1.53004 * 109.46796 * 120.00101 * 10 8 7 13 13 C 1.50695 * 109.47148 * 239.99608 * 10 8 7 14 14 H 1.08000 * 120.00282 * 354.50348 * 13 10 8 15 15 C 1.37881 * 119.99950 * 174.49535 * 13 10 8 16 16 N 1.31505 * 120.00057 * 164.73773 * 15 13 10 17 17 Si 1.86804 * 119.99890 * 344.73528 * 15 13 10 18 18 H 1.48492 * 109.47412 * 269.99948 * 17 15 13 19 19 H 1.48497 * 109.47101 * 30.00299 * 17 15 13 20 20 H 1.48506 * 109.47088 * 150.00070 * 17 15 13 21 21 N 1.32277 * 120.40003 * 180.24710 * 2 1 3 22 22 H 1.08997 * 109.47232 * 90.00083 * 1 2 3 23 23 H 1.09003 * 109.46999 * 209.99801 * 1 2 3 24 24 H 1.08999 * 109.46965 * 329.99633 * 1 2 3 25 25 H 1.07996 * 120.72533 * 359.97438 * 3 2 1 26 26 H 1.09001 * 109.47452 * 270.02171 * 5 4 3 27 27 H 1.09001 * 109.47209 * 30.02528 * 5 4 3 28 28 H 1.09002 * 109.46862 * 150.02214 * 5 4 3 29 29 H 1.09002 * 109.47070 * 270.00581 * 9 8 7 30 30 H 1.09004 * 109.46939 * 30.00286 * 9 8 7 31 31 H 1.08998 * 109.47624 * 150.00237 * 9 8 7 32 32 H 1.08993 * 109.47421 * 53.76242 * 12 10 8 33 33 H 1.09002 * 109.47158 * 173.76640 * 12 10 8 34 34 H 1.09009 * 109.47153 * 293.76218 * 12 10 8 35 35 H 0.96997 * 120.00373 * 354.89627 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2084 1.1954 0.0000 4 6 3.5938 1.1508 0.0005 5 6 4.3978 2.4254 0.0000 6 7 4.2016 -0.0240 0.0005 7 6 3.5013 -1.1488 0.0005 8 7 4.1698 -2.3607 0.0010 9 6 5.6344 -2.3895 0.0022 10 6 3.4125 -3.6149 0.0016 11 1 2.3450 -3.3947 0.0010 12 6 3.7664 -4.4248 -1.2473 13 6 3.7611 -4.4116 1.2323 14 1 4.5389 -4.0659 1.8970 15 6 3.0868 -5.5818 1.5099 16 7 3.5720 -6.4266 2.3932 17 14 1.4840 -5.9671 0.6312 18 1 0.3468 -5.4182 1.4124 19 1 1.4996 -5.3510 -0.7199 20 1 1.3315 -7.4387 0.5024 21 7 2.1764 -1.1409 -0.0049 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6869 2.1411 -0.0004 26 1 4.5917 2.7323 -1.0278 27 1 3.8389 3.2078 0.5135 28 1 5.3444 2.2581 0.5140 29 1 5.9985 -2.3965 -1.0252 30 1 6.0148 -1.5068 0.5164 31 1 5.9799 -3.2864 0.5162 32 1 4.8476 -4.5501 -1.3049 33 1 3.2896 -5.4035 -1.1929 34 1 3.4140 -3.8978 -2.1341 35 1 4.4397 -6.2633 2.7948 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:15 Heat of formation + Delta-G solvation = 33.025115 kcal Electronic energy + Delta-G solvation = -16813.115836 eV Core-core repulsion = 14231.668274 eV Total energy + Delta-G solvation = -2581.447563 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.86873 -38.47413 -35.60605 -35.12849 -33.39451 -31.63125 -30.11179 -28.24857 -27.52922 -26.80433 -24.04837 -22.36228 -21.30320 -19.57894 -18.40835 -18.08802 -16.53401 -16.25767 -16.00618 -15.41066 -15.05229 -14.85263 -14.29090 -14.22460 -14.07644 -13.84151 -13.49282 -13.33018 -13.26908 -13.16468 -12.92021 -12.76775 -12.45373 -12.01953 -11.63839 -11.46138 -11.22791 -11.15715 -10.72735 -10.52021 -9.89443 -8.96154 -8.48605 -6.41977 0.35920 0.38447 1.46558 1.50516 1.70367 1.96063 2.45453 2.99122 3.02688 3.29680 3.59161 3.80139 4.34087 4.39051 4.48023 4.54131 4.55827 4.58481 4.69399 4.73915 4.77867 4.78623 4.83347 4.86804 4.99787 5.02948 5.11380 5.24366 5.35248 5.67729 5.81049 5.95222 6.07596 6.21897 6.54246 6.77380 7.33007 7.53361 8.58635 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028073 B = 0.008319 C = 0.007063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.176912 B = 3364.931811 C = 3963.391058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.195 3.805 3 C -0.301 4.301 4 C 0.196 3.804 5 C -0.094 4.094 6 N -0.604 5.604 7 C 0.552 3.448 8 N -0.575 5.575 9 C 0.118 3.882 10 C 0.252 3.748 11 H 0.055 0.945 12 C -0.147 4.147 13 C -0.607 4.607 14 H 0.020 0.980 15 C -0.011 4.011 16 N -0.933 5.933 17 Si 1.079 2.921 18 H -0.277 1.277 19 H -0.240 1.240 20 H -0.279 1.279 21 N -0.609 5.609 22 H 0.098 0.902 23 H 0.065 0.935 24 H 0.110 0.890 25 H 0.178 0.822 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 17.093 -8.083 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.048 3.952 3 C -0.327 4.327 4 C 0.049 3.951 5 C -0.151 4.151 6 N -0.330 5.330 7 C 0.196 3.804 8 N -0.289 5.289 9 C -0.026 4.026 10 C 0.148 3.852 11 H 0.072 0.928 12 C -0.206 4.206 13 C -0.645 4.645 14 H 0.039 0.961 15 C -0.209 4.209 16 N -0.569 5.569 17 Si 0.900 3.100 18 H -0.203 1.203 19 H -0.164 1.164 20 H -0.205 1.205 21 N -0.334 5.334 22 H 0.117 0.883 23 H 0.084 0.916 24 H 0.129 0.871 25 H 0.195 0.805 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.584 14.914 -8.160 17.607 hybrid contribution 1.479 1.235 0.743 2.065 sum -3.105 16.149 -7.417 18.040 Atomic orbital electron populations 1.20859 0.85725 1.04532 1.04535 1.22205 0.98775 0.87444 0.86786 1.22428 0.95043 1.00649 1.14544 1.22222 0.92802 0.93374 0.86701 1.20823 0.99460 0.90335 1.04518 1.67789 1.41339 0.98155 1.25710 1.19530 0.85663 0.86703 0.88500 1.46475 1.06214 1.02009 1.74172 1.21357 0.78403 1.01819 1.00986 1.19025 0.92951 0.79660 0.93541 0.92762 1.22338 1.01196 0.99931 0.97129 1.22376 1.22751 1.09329 1.10070 0.96148 1.27049 1.05469 0.91943 0.96476 1.70928 1.19406 1.36922 1.29628 0.83701 0.72261 0.76650 0.77422 1.20319 1.16362 1.20497 1.67800 1.07948 1.32662 1.25008 0.88321 0.91611 0.87130 0.80508 0.88404 0.87436 0.90987 0.92543 0.91233 0.92597 0.93223 0.92252 0.93733 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.21 10.22 71.24 0.73 -1.49 16 2 C 0.20 6.27 6.82 42.58 0.29 6.56 16 3 C -0.30 -7.96 9.53 22.44 0.21 -7.75 16 4 C 0.20 5.81 6.82 42.58 0.29 6.10 16 5 C -0.09 -1.74 10.22 71.24 0.73 -1.01 16 6 N -0.60 -23.39 9.05 -186.03 -1.68 -25.08 16 7 C 0.55 24.52 8.17 261.49 2.14 26.66 16 8 N -0.58 -27.01 2.85 -715.83 -2.04 -29.05 16 9 C 0.12 4.85 9.31 127.77 1.19 6.04 16 10 C 0.25 12.66 2.21 44.24 0.10 12.76 16 11 H 0.05 2.84 5.40 -2.39 -0.01 2.83 16 12 C -0.15 -6.55 8.58 71.98 0.62 -5.93 16 13 C -0.61 -35.52 8.37 25.60 0.21 -35.30 16 14 H 0.02 1.32 7.38 -2.91 -0.02 1.30 16 15 C -0.01 -0.62 5.33 84.66 0.45 -0.17 16 16 N -0.93 -58.98 13.69 21.45 0.29 -58.69 16 17 Si 1.08 50.96 26.17 68.60 1.80 52.75 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.24 -10.13 5.53 99.48 0.55 -9.57 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 N -0.61 -25.95 8.78 -186.04 -1.63 -27.59 16 22 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.11 1.66 8.09 -2.39 -0.02 1.64 16 25 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.11 1.31 8.10 -2.39 -0.02 1.29 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 2.73 7.33 -2.38 -0.02 2.71 16 31 H 0.06 2.47 6.92 -2.39 -0.02 2.45 16 32 H 0.05 2.12 7.47 -2.39 -0.02 2.11 16 33 H 0.06 2.62 5.06 -2.39 -0.01 2.61 16 34 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 Total: -1.00 -74.04 287.25 4.57 -69.48 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.88 Total: 11.71 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.96 Total: 6.46 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -5.07 Total: -140.41 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 1.80 Total: 52.75 kcal Total: -74.04 4.57 -69.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.503 kcal (2) G-P(sol) polarization free energy of solvation -74.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds