Wall clock time and date at job start Sun Mar 29 2020 21:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38607 * 120.40390 * 2 1 4 4 C 1.38602 * 118.55930 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.40112 * 179.97438 * 4 3 2 6 6 N 1.32278 * 119.19714 * 359.97438 * 4 3 2 7 7 C 1.32504 * 120.74264 * 359.97438 * 6 4 3 8 8 N 1.38393 * 119.21893 * 179.97438 * 7 6 4 9 9 C 1.46506 * 120.00013 * 359.97438 * 8 7 6 10 10 C 1.46500 * 120.00368 * 180.02562 * 8 7 6 11 11 H 1.09005 * 109.46643 * 0.02562 * 10 8 7 12 12 C 1.52999 * 109.47436 * 240.00396 * 10 8 7 13 13 C 1.50694 * 109.47517 * 119.99786 * 10 8 7 14 14 H 1.08002 * 120.00179 * 0.02562 * 13 10 8 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 10 8 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 10 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 N 1.32284 * 120.39996 * 180.24290 * 2 1 3 22 22 H 1.09001 * 109.46899 * 90.00031 * 1 2 3 23 23 H 1.08992 * 109.47654 * 210.00137 * 1 2 3 24 24 H 1.09003 * 109.47314 * 330.00616 * 1 2 3 25 25 H 1.07990 * 120.72036 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.47109 * 270.01774 * 5 4 3 27 27 H 1.08993 * 109.47274 * 30.01948 * 5 4 3 28 28 H 1.09006 * 109.47152 * 150.02143 * 5 4 3 29 29 H 1.09003 * 109.47379 * 269.99584 * 9 8 7 30 30 H 1.08997 * 109.47046 * 30.00197 * 9 8 7 31 31 H 1.09005 * 109.46584 * 150.00165 * 9 8 7 32 32 H 1.09001 * 109.47411 * 179.97438 * 12 10 8 33 33 H 1.09002 * 109.46412 * 299.99681 * 12 10 8 34 34 H 1.08993 * 109.47298 * 59.98918 * 12 10 8 35 35 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1955 0.0000 4 6 3.5938 1.1508 0.0005 5 6 4.3978 2.4254 0.0000 6 7 4.2015 -0.0241 0.0016 7 6 3.5012 -1.1489 0.0026 8 7 4.1696 -2.3608 0.0031 9 6 5.6343 -2.3895 0.0019 10 6 3.4124 -3.6149 0.0036 11 1 2.3448 -3.3948 0.0031 12 6 3.7662 -4.4238 1.2532 13 6 3.7608 -4.4127 -1.2265 14 1 4.4752 -4.0246 -1.9374 15 6 3.1677 -5.6381 -1.4444 16 7 2.2981 -6.1110 -0.5784 17 14 3.5990 -6.6267 -2.9695 18 1 2.6754 -6.2618 -4.0736 19 1 4.9964 -6.3282 -3.3740 20 1 3.4683 -8.0760 -2.6734 21 7 2.1764 -1.1410 -0.0048 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6870 2.1411 -0.0004 26 1 4.5918 2.7321 -1.0278 27 1 3.8390 3.2077 0.5133 28 1 5.3444 2.2581 0.5140 29 1 5.9968 -2.3976 -1.0260 30 1 6.0155 -1.5064 0.5147 31 1 5.9805 -3.2861 0.5163 32 1 3.2025 -5.3567 1.2539 33 1 4.8337 -4.6439 1.2532 34 1 3.5142 -3.8468 2.1429 35 1 1.8805 -6.9730 -0.7319 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:18 Heat of formation + Delta-G solvation = 52.127566 kcal Electronic energy + Delta-G solvation = -16726.309456 eV Core-core repulsion = 14145.690238 eV Total energy + Delta-G solvation = -2580.619218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35201 -36.59209 -34.19884 -33.20829 -31.58778 -29.38726 -28.58777 -27.06681 -25.85228 -25.17597 -22.38417 -20.98659 -19.62083 -17.06601 -16.31214 -16.13215 -14.93279 -14.84316 -14.63607 -13.61029 -13.39749 -13.32857 -13.19042 -12.63483 -12.55265 -12.28317 -12.04446 -11.78588 -11.50168 -11.27383 -11.02900 -10.81252 -10.61907 -10.36949 -10.15029 -10.05214 -9.70500 -9.45669 -8.92409 -8.49549 -8.25585 -6.90744 -6.04525 -4.12515 1.77866 1.85637 3.28188 3.34414 3.37302 3.65979 4.39306 4.51193 4.64189 4.86157 5.23652 5.25814 5.57777 5.62935 5.67330 5.70175 5.83808 5.86830 5.99482 6.12342 6.25750 6.30714 6.32509 6.50080 6.76495 6.89414 6.94031 7.09391 7.47347 7.62640 7.73003 7.92876 8.09062 8.24077 8.54513 8.86542 9.14271 9.53454 10.99657 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028956 B = 0.007266 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.755364 B = 3852.565442 C = 4210.442343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.217 3.783 3 C -0.322 4.322 4 C 0.212 3.788 5 C -0.099 4.099 6 N -0.589 5.589 7 C 0.575 3.425 8 N -0.557 5.557 9 C 0.110 3.890 10 C 0.267 3.733 11 H 0.073 0.927 12 C -0.148 4.148 13 C -0.524 4.524 14 H 0.058 0.942 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.275 1.275 20 H -0.285 1.285 21 N -0.562 5.562 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.129 0.871 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.030 0.970 34 H 0.010 0.990 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 12.613 2.116 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.067 3.933 3 C -0.349 4.349 4 C 0.063 3.937 5 C -0.157 4.157 6 N -0.315 5.315 7 C 0.219 3.781 8 N -0.267 5.267 9 C -0.034 4.034 10 C 0.166 3.834 11 H 0.091 0.909 12 C -0.206 4.206 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.200 1.200 20 H -0.211 1.211 21 N -0.286 5.286 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.147 0.853 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.049 0.951 34 H 0.029 0.971 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.945 11.273 2.148 11.514 hybrid contribution -0.189 0.144 -0.921 0.951 sum 0.755 11.416 1.227 11.507 Atomic orbital electron populations 1.20708 0.88864 1.03269 1.03143 1.21358 0.96702 0.87737 0.87549 1.21883 0.95340 0.99457 1.18268 1.21226 0.91310 0.92988 0.88178 1.20675 0.99843 0.92265 1.02915 1.67751 1.40842 0.97621 1.25243 1.19399 0.85054 0.86411 0.87217 1.46967 1.05675 1.02519 1.71564 1.21381 0.79672 1.01485 1.00851 1.19066 0.93333 0.77139 0.93820 0.90934 1.22126 1.00057 1.02587 0.95859 1.21359 1.25542 1.02986 1.06366 0.92407 1.24862 0.94854 0.97261 0.96706 1.69881 1.28058 1.19561 1.35215 0.86499 0.78799 0.79094 0.83031 1.20665 1.19955 1.21089 1.67880 1.07872 1.29861 1.22999 0.90198 0.90172 0.90822 0.85267 0.90382 0.90759 0.90604 0.93848 0.91978 0.91336 0.88657 0.95123 0.97065 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.22 36.01 0.37 -1.03 16 2 C 0.22 3.91 6.82 -82.26 -0.56 3.35 16 3 C -0.32 -5.08 9.53 -39.31 -0.37 -5.45 16 4 C 0.21 3.53 6.82 -82.27 -0.56 2.97 16 5 C -0.10 -1.15 10.22 36.00 0.37 -0.78 16 6 N -0.59 -11.91 9.05 -10.16 -0.09 -12.01 16 7 C 0.57 13.13 8.17 -322.82 -2.64 10.49 16 8 N -0.56 -13.13 2.85 -177.61 -0.51 -13.64 16 9 C 0.11 2.22 9.68 59.85 0.58 2.80 16 10 C 0.27 6.98 2.66 -69.09 -0.18 6.80 16 11 H 0.07 2.10 6.76 -51.93 -0.35 1.75 16 12 C -0.15 -3.64 8.95 37.16 0.33 -3.31 16 13 C -0.52 -14.57 8.37 -34.44 -0.29 -14.86 16 14 H 0.06 1.63 7.64 -52.49 -0.40 1.22 16 15 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 16 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 17 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 N -0.56 -12.65 8.78 -10.15 -0.09 -12.74 16 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 25 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.15 7.33 -51.93 -0.38 0.77 16 31 H 0.07 1.33 6.43 -51.93 -0.33 1.00 16 32 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 33 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -31.11 291.91 -8.80 -39.91 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.06 Total: -0.47 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -3.05 Total: 2.69 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.06 Total: -62.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.11 -8.80 -39.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.037 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds