Wall clock time and date at job start Sun Mar 29 2020 21:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38607 * 120.40390 * 2 1 4 4 C 1.38602 * 118.55930 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.40112 * 179.97438 * 4 3 2 6 6 N 1.32278 * 119.19714 * 359.97438 * 4 3 2 7 7 C 1.32504 * 120.74264 * 359.97438 * 6 4 3 8 8 N 1.38393 * 119.21893 * 179.97438 * 7 6 4 9 9 C 1.46506 * 120.00013 * 359.97438 * 8 7 6 10 10 C 1.46500 * 120.00368 * 180.02562 * 8 7 6 11 11 H 1.09005 * 109.46643 * 0.02562 * 10 8 7 12 12 C 1.52999 * 109.47436 * 240.00396 * 10 8 7 13 13 C 1.50694 * 109.47517 * 119.99786 * 10 8 7 14 14 H 1.08002 * 120.00179 * 0.02562 * 13 10 8 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 10 8 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 10 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 N 1.32284 * 120.39996 * 180.24290 * 2 1 3 22 22 H 1.09001 * 109.46899 * 90.00031 * 1 2 3 23 23 H 1.08992 * 109.47654 * 210.00137 * 1 2 3 24 24 H 1.09003 * 109.47314 * 330.00616 * 1 2 3 25 25 H 1.07990 * 120.72036 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.47109 * 270.01774 * 5 4 3 27 27 H 1.08993 * 109.47274 * 30.01948 * 5 4 3 28 28 H 1.09006 * 109.47152 * 150.02143 * 5 4 3 29 29 H 1.09003 * 109.47379 * 269.99584 * 9 8 7 30 30 H 1.08997 * 109.47046 * 30.00197 * 9 8 7 31 31 H 1.09005 * 109.46584 * 150.00165 * 9 8 7 32 32 H 1.09001 * 109.47411 * 179.97438 * 12 10 8 33 33 H 1.09002 * 109.46412 * 299.99681 * 12 10 8 34 34 H 1.08993 * 109.47298 * 59.98918 * 12 10 8 35 35 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1955 0.0000 4 6 3.5938 1.1508 0.0005 5 6 4.3978 2.4254 0.0000 6 7 4.2015 -0.0241 0.0016 7 6 3.5012 -1.1489 0.0026 8 7 4.1696 -2.3608 0.0031 9 6 5.6343 -2.3895 0.0019 10 6 3.4124 -3.6149 0.0036 11 1 2.3448 -3.3948 0.0031 12 6 3.7662 -4.4238 1.2532 13 6 3.7608 -4.4127 -1.2265 14 1 4.4752 -4.0246 -1.9374 15 6 3.1677 -5.6381 -1.4444 16 7 2.2981 -6.1110 -0.5784 17 14 3.5990 -6.6267 -2.9695 18 1 2.6754 -6.2618 -4.0736 19 1 4.9964 -6.3282 -3.3740 20 1 3.4683 -8.0760 -2.6734 21 7 2.1764 -1.1410 -0.0048 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6870 2.1411 -0.0004 26 1 4.5918 2.7321 -1.0278 27 1 3.8390 3.2077 0.5133 28 1 5.3444 2.2581 0.5140 29 1 5.9968 -2.3976 -1.0260 30 1 6.0155 -1.5064 0.5147 31 1 5.9805 -3.2861 0.5163 32 1 3.2025 -5.3567 1.2539 33 1 4.8337 -4.6439 1.2532 34 1 3.5142 -3.8468 2.1429 35 1 1.8805 -6.9730 -0.7319 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:17 Heat of formation + Delta-G solvation = 35.233658 kcal Electronic energy + Delta-G solvation = -16727.042031 eV Core-core repulsion = 14145.690238 eV Total energy + Delta-G solvation = -2581.351793 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.80044 -38.31765 -35.55646 -35.07913 -33.17322 -31.10346 -29.99080 -28.21342 -27.46978 -27.25127 -24.05331 -22.31390 -21.39612 -18.65243 -18.15100 -17.90796 -16.65258 -16.35695 -16.12437 -15.29838 -14.89644 -14.81739 -14.32742 -14.20814 -13.85155 -13.51428 -13.29425 -13.24835 -13.04405 -12.93937 -12.83695 -12.71884 -12.48617 -12.20810 -12.11024 -11.59615 -11.25346 -11.11665 -10.61974 -10.53662 -9.81079 -8.58230 -8.11462 -6.30418 0.40417 0.44542 1.39185 1.39545 1.50188 2.06266 2.41822 3.05306 3.12654 3.35736 3.64748 3.86767 4.40037 4.44204 4.58148 4.60526 4.68581 4.74484 4.77329 4.81672 4.85228 4.87240 4.95686 5.03891 5.05169 5.10207 5.26095 5.41879 5.57820 5.75389 5.86252 6.13936 6.23600 6.34604 6.76420 6.87036 7.37084 7.62295 8.89028 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028956 B = 0.007266 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.755364 B = 3852.565442 C = 4210.442343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.192 3.808 3 C -0.304 4.304 4 C 0.196 3.804 5 C -0.093 4.093 6 N -0.601 5.601 7 C 0.550 3.450 8 N -0.578 5.578 9 C 0.118 3.882 10 C 0.277 3.723 11 H 0.036 0.964 12 C -0.133 4.133 13 C -0.540 4.540 14 H 0.048 0.952 15 C 0.021 3.979 16 N -0.913 5.913 17 Si 0.961 3.039 18 H -0.280 1.280 19 H -0.270 1.270 20 H -0.276 1.276 21 N -0.609 5.609 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.113 0.887 25 H 0.176 0.824 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.016 0.984 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 14.799 1.714 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.045 3.955 3 C -0.330 4.330 4 C 0.049 3.951 5 C -0.150 4.150 6 N -0.328 5.328 7 C 0.194 3.806 8 N -0.291 5.291 9 C -0.025 4.025 10 C 0.175 3.825 11 H 0.053 0.947 12 C -0.192 4.192 13 C -0.579 4.579 14 H 0.066 0.934 15 C -0.179 4.179 16 N -0.552 5.552 17 Si 0.786 3.214 18 H -0.206 1.206 19 H -0.194 1.194 20 H -0.201 1.201 21 N -0.335 5.335 22 H 0.108 0.892 23 H 0.082 0.918 24 H 0.132 0.868 25 H 0.194 0.806 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.971 13.532 1.753 13.680 hybrid contribution -0.285 -0.344 -0.777 0.897 sum 0.686 13.188 0.976 13.242 Atomic orbital electron populations 1.20821 0.86128 1.04431 1.04103 1.22180 0.98664 0.87604 0.87092 1.22397 0.95179 1.00426 1.14968 1.22221 0.92688 0.93489 0.86742 1.20812 0.99566 0.90271 1.04362 1.67808 1.41148 0.98054 1.25780 1.19604 0.85588 0.86906 0.88478 1.46787 1.06421 1.02215 1.73636 1.21371 0.78305 1.02190 1.00656 1.18622 0.91765 0.78388 0.93692 0.94657 1.21919 1.00162 1.01364 0.95710 1.21554 1.25633 1.03679 1.07047 0.93417 1.25626 0.94636 0.98133 0.99491 1.69997 1.28607 1.19913 1.36646 0.85516 0.78587 0.77904 0.79354 1.20594 1.19414 1.20065 1.67870 1.08292 1.32562 1.24740 0.89172 0.91827 0.86803 0.80629 0.88803 0.87366 0.90627 0.94452 0.90510 0.91212 0.90812 0.94158 0.96471 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.50 10.22 71.24 0.73 -1.77 16 2 C 0.19 6.73 6.82 42.58 0.29 7.02 16 3 C -0.30 -8.63 9.53 22.44 0.21 -8.42 16 4 C 0.20 6.06 6.82 42.58 0.29 6.35 16 5 C -0.09 -1.79 10.22 71.23 0.73 -1.06 16 6 N -0.60 -24.01 9.05 -186.05 -1.68 -25.70 16 7 C 0.55 25.61 8.17 261.49 2.14 27.74 16 8 N -0.58 -28.06 2.85 -715.83 -2.04 -30.10 16 9 C 0.12 4.84 9.68 127.77 1.24 6.08 16 10 C 0.28 15.08 2.66 44.24 0.12 15.20 16 11 H 0.04 2.17 6.76 -2.38 -0.02 2.16 16 12 C -0.13 -6.76 8.95 71.98 0.64 -6.12 16 13 C -0.54 -30.91 8.37 25.60 0.21 -30.70 16 14 H 0.05 2.76 7.64 -2.91 -0.02 2.73 16 15 C 0.02 1.18 5.30 84.66 0.45 1.63 16 16 N -0.91 -52.87 11.32 21.45 0.24 -52.62 16 17 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 N -0.61 -28.05 8.78 -186.04 -1.63 -29.68 16 22 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.11 1.94 8.10 -2.39 -0.02 1.92 16 25 H 0.18 3.26 8.06 -2.92 -0.02 3.24 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.11 1.37 8.09 -2.39 -0.02 1.35 16 28 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.85 7.33 -2.39 -0.02 2.83 16 31 H 0.07 2.76 6.43 -2.38 -0.02 2.74 16 32 H 0.07 4.06 6.07 -2.39 -0.01 4.04 16 33 H 0.04 1.90 6.66 -2.39 -0.02 1.89 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -69.98 291.91 5.03 -64.95 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.07 Total: 10.83 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 7.05 Total: 15.96 kcal Atomic # 7 Polarization: -132.99 SS G_CDS: -5.12 Total: -138.11 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -69.98 5.03 -64.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.189 kcal (2) G-P(sol) polarization free energy of solvation -69.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds