Wall clock time and date at job start Sun Mar 29 2020 21:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47157 * 2 1 4 4 C 1.38114 * 120.40117 * 125.02666 * 3 2 1 5 5 C 1.39627 * 118.33508 * 179.97438 * 4 3 2 6 6 N 1.38535 * 120.53174 * 180.29296 * 5 4 3 7 7 C 1.46500 * 120.00184 * 190.96016 * 6 5 4 8 8 C 1.46504 * 120.00097 * 10.96160 * 6 5 4 9 9 H 1.08994 * 109.46999 * 5.09243 * 8 6 5 10 10 C 1.53001 * 109.46962 * 245.09350 * 8 6 5 11 11 C 1.50695 * 109.47075 * 125.09359 * 8 6 5 12 12 H 1.08004 * 120.00089 * 0.02562 * 11 8 6 13 13 C 1.37875 * 119.99974 * 180.02562 * 11 8 6 14 14 N 1.31512 * 120.00486 * 359.97438 * 13 11 8 15 15 Si 1.86807 * 120.00167 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47095 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46973 * 119.99970 * 15 13 11 18 18 H 1.48496 * 109.47115 * 239.99948 * 15 13 11 19 19 N 1.32995 * 118.93397 * 0.02562 * 5 4 3 20 20 C 1.31745 * 120.68891 * 0.02562 * 19 5 4 21 21 N 1.31788 * 121.83210 * 359.97200 * 20 19 5 22 22 H 1.08999 * 109.47190 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46961 * 299.99654 * 1 2 3 24 24 H 1.09003 * 109.47344 * 59.99751 * 1 2 3 25 25 H 1.09001 * 109.46961 * 240.00346 * 2 1 3 26 26 H 1.08994 * 109.47267 * 120.00113 * 2 1 3 27 27 H 1.07999 * 120.83047 * 359.97438 * 4 3 2 28 28 H 1.09005 * 109.46554 * 89.99891 * 7 6 5 29 29 H 1.09000 * 109.47507 * 209.99767 * 7 6 5 30 30 H 1.08996 * 109.47052 * 330.00178 * 7 6 5 31 31 H 1.09003 * 109.46521 * 179.97438 * 10 8 6 32 32 H 1.08994 * 109.47176 * 299.99785 * 10 8 6 33 33 H 1.08997 * 109.47260 * 60.00318 * 10 8 6 34 34 H 0.97000 * 120.00696 * 179.97438 * 14 13 11 35 35 H 1.07995 * 119.08676 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9100 1.8519 0.9755 5 6 3.3483 3.1769 0.9340 6 7 4.2333 3.6556 1.8862 7 6 4.5004 5.0929 1.9811 8 6 4.9023 2.7245 2.7982 9 1 4.6516 1.7008 2.5205 10 6 4.4382 2.9924 4.2313 11 6 6.3941 2.9183 2.7088 12 1 6.8030 3.6611 2.0398 13 6 7.2369 2.1474 3.4809 14 7 6.7391 1.2432 4.2959 15 14 9.0862 2.3871 3.3696 16 1 9.3881 3.4587 2.3869 17 1 9.6163 2.7741 4.7017 18 1 9.7242 1.1195 2.9321 19 7 2.9066 3.9706 -0.0375 20 6 2.0686 3.5172 -0.9474 21 7 1.6365 2.2722 -0.9356 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.2487 1.1808 1.7510 28 1 3.7929 5.5489 2.6738 29 1 5.5163 5.2506 2.3432 30 1 4.3906 5.5486 0.9971 31 1 4.9356 2.2993 4.9098 32 1 4.6889 4.0161 4.5090 33 1 3.3592 2.8522 4.2960 34 1 7.3321 0.7006 4.8389 35 1 1.7261 4.1843 -1.7246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096125.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:35 Heat of formation + Delta-G solvation = 30.464318 kcal Electronic energy + Delta-G solvation = -16655.318768 eV Core-core repulsion = 14073.760161 eV Total energy + Delta-G solvation = -2581.558607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79446 -38.56679 -35.92469 -34.87000 -32.79198 -31.60661 -30.97661 -27.56707 -27.33380 -25.13993 -24.95946 -22.82778 -21.19671 -18.75885 -18.20048 -18.00829 -16.71852 -16.26337 -16.09503 -15.70964 -15.33865 -15.03526 -14.54405 -14.42282 -14.28849 -13.56805 -13.22946 -13.06891 -12.91753 -12.74868 -12.64940 -12.37004 -12.29311 -12.17034 -12.05408 -11.59343 -11.47529 -11.05362 -10.60110 -10.51931 -10.01892 -8.65936 -8.17220 -6.35143 0.24651 0.52366 1.38885 1.42166 1.52167 2.13569 2.41735 3.04585 3.08579 3.33711 3.51444 3.84255 4.23643 4.32366 4.44107 4.49471 4.53634 4.67706 4.75792 4.80144 4.87543 4.91262 4.99485 5.04165 5.07883 5.20446 5.34290 5.40776 5.57447 5.64029 5.73434 5.96901 6.10837 6.50590 6.66184 6.78927 7.34099 7.46876 8.83883 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.006984 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.161096 B = 4008.326637 C = 4414.600067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C 0.198 3.802 4 C -0.312 4.312 5 C 0.424 3.576 6 N -0.584 5.584 7 C 0.103 3.897 8 C 0.272 3.728 9 H 0.032 0.968 10 C -0.136 4.136 11 C -0.543 4.543 12 H 0.054 0.946 13 C 0.025 3.975 14 N -0.910 5.910 15 Si 0.959 3.041 16 H -0.272 1.272 17 H -0.275 1.275 18 H -0.280 1.280 19 N -0.606 5.606 20 C 0.329 3.671 21 N -0.580 5.580 22 H 0.081 0.919 23 H 0.043 0.957 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.131 0.869 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.023 0.977 34 H 0.267 0.733 35 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.298 0.387 -5.755 10.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 C 0.056 3.944 4 C -0.340 4.340 5 C 0.181 3.819 6 N -0.292 5.292 7 C -0.040 4.040 8 C 0.170 3.830 9 H 0.050 0.950 10 C -0.195 4.195 11 C -0.581 4.581 12 H 0.072 0.928 13 C -0.175 4.175 14 N -0.548 5.548 15 Si 0.785 3.215 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.206 1.206 19 N -0.332 5.332 20 C 0.039 3.961 21 N -0.302 5.302 22 H 0.100 0.900 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.149 0.851 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.374 0.916 -6.106 10.404 hybrid contribution 1.515 -0.356 0.918 1.807 sum -6.859 0.560 -5.188 8.619 Atomic orbital electron populations 1.21583 0.92661 1.02842 1.01894 1.20604 0.98021 0.88371 1.04098 1.21733 0.88343 0.97059 0.87218 1.22187 1.07975 0.97323 1.06542 1.18939 0.86603 0.89536 0.86819 1.47105 1.41527 1.08229 1.32371 1.21483 1.00955 0.79715 1.01810 1.18788 0.90606 0.87899 0.85684 0.95024 1.21937 0.97224 1.00891 0.99423 1.21547 0.91439 1.20952 1.24191 0.92759 1.25570 1.03010 0.94490 0.94476 1.69959 1.36437 1.22616 1.25819 0.85484 0.79996 0.77960 0.78054 1.19701 1.20090 1.20628 1.67996 1.19462 1.39443 1.06327 1.25236 0.86822 0.90571 0.93468 1.68226 1.30112 1.04773 1.27070 0.90002 0.93828 0.92056 0.88646 0.89681 0.85109 0.93352 0.91478 0.90816 0.90625 0.94550 0.95773 0.92346 0.76034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.78 71.98 0.70 -2.15 16 2 C -0.07 -1.87 6.36 29.85 0.19 -1.68 16 3 C 0.20 6.68 6.20 42.42 0.26 6.94 16 4 C -0.31 -12.35 8.92 22.58 0.20 -12.15 16 5 C 0.42 17.83 7.35 133.16 0.98 18.81 16 6 N -0.58 -25.63 2.86 -708.32 -2.02 -27.66 16 7 C 0.10 3.97 9.74 127.77 1.24 5.21 16 8 C 0.27 13.25 2.51 44.24 0.11 13.36 16 9 H 0.03 1.68 5.57 -2.39 -0.01 1.66 16 10 C -0.14 -6.31 9.04 71.98 0.65 -5.66 16 11 C -0.54 -28.52 7.96 25.60 0.20 -28.31 16 12 H 0.05 2.89 6.98 -2.91 -0.02 2.87 16 13 C 0.03 1.31 5.30 84.65 0.45 1.76 16 14 N -0.91 -48.93 11.32 21.45 0.24 -48.69 16 15 Si 0.96 41.79 29.54 68.60 2.03 43.82 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 N -0.61 -23.00 9.23 -197.62 -1.82 -24.82 16 20 C 0.33 10.53 12.28 180.90 2.22 12.75 16 21 N -0.58 -19.14 10.03 -188.34 -1.89 -21.03 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.38 7.98 -2.39 -0.02 1.36 16 25 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.08 2.08 7.93 -2.39 -0.02 2.06 16 27 H 0.13 5.40 6.05 -2.91 -0.02 5.38 16 28 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.07 2.66 6.64 -2.39 -0.02 2.64 16 30 H 0.07 2.68 7.27 -2.39 -0.02 2.66 16 31 H 0.08 3.82 6.07 -2.39 -0.01 3.81 16 32 H 0.04 1.61 7.80 -2.39 -0.02 1.59 16 33 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 35 H 0.22 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -58.58 289.12 4.82 -53.76 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 1.07 Total: 15.74 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 7.22 Total: 8.88 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -5.49 Total: -122.20 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -58.58 4.82 -53.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096125.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.221 kcal (2) G-P(sol) polarization free energy of solvation -58.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds