Wall clock time and date at job start Sun Mar 29 2020 21:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38114 * 120.40475 * 2 1 4 4 C 1.39623 * 118.33642 * 180.23760 * 3 2 1 5 5 N 1.38538 * 120.53256 * 179.80100 * 4 3 2 6 6 C 1.46501 * 120.00041 * 190.69930 * 5 4 3 7 7 C 1.46506 * 120.00067 * 10.70298 * 5 4 3 8 8 H 1.09005 * 109.46805 * 5.61272 * 7 5 4 9 9 C 1.52994 * 109.46972 * 245.60962 * 7 5 4 10 10 C 1.50704 * 109.47135 * 125.60972 * 7 5 4 11 11 H 1.08003 * 119.99702 * 359.97438 * 10 7 5 12 12 C 1.37870 * 120.00045 * 180.02562 * 10 7 5 13 13 N 1.31526 * 119.99936 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 120.00273 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.46904 * 59.99422 * 14 12 10 16 16 H 1.48497 * 109.47317 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46725 * 299.99830 * 14 12 10 18 18 N 1.32993 * 118.93223 * 359.53330 * 4 3 2 19 19 C 1.31742 * 120.69003 * 0.24382 * 18 4 3 20 20 C 1.50705 * 119.08433 * 179.97438 * 19 18 4 21 21 N 1.31790 * 121.83174 * 359.97438 * 19 18 4 22 22 H 1.08994 * 109.46890 * 270.23622 * 1 2 3 23 23 H 1.09003 * 109.46470 * 30.23460 * 1 2 3 24 24 H 1.09004 * 109.47131 * 150.23056 * 1 2 3 25 25 H 1.08007 * 120.83020 * 0.02562 * 3 2 1 26 26 H 1.08993 * 109.47095 * 270.00197 * 6 5 4 27 27 H 1.08997 * 109.46946 * 30.00646 * 6 5 4 28 28 H 1.08998 * 109.47087 * 150.00443 * 6 5 4 29 29 H 1.08999 * 109.47215 * 299.99705 * 9 7 5 30 30 H 1.08997 * 109.47349 * 60.00119 * 9 7 5 31 31 H 1.09004 * 109.47029 * 179.97438 * 9 7 5 32 32 H 0.96994 * 119.99888 * 180.02562 * 13 12 10 33 33 H 1.09007 * 109.46693 * 90.00594 * 20 19 18 34 34 H 1.08993 * 109.47201 * 210.00073 * 20 19 18 35 35 H 1.08993 * 109.47155 * 330.00997 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1912 0.0000 4 6 3.6014 1.1408 -0.0051 5 7 4.3478 2.3079 -0.0095 6 6 5.7918 2.2530 -0.2503 7 6 3.6931 3.5971 0.2268 8 1 2.6466 3.4315 0.4831 9 6 3.7791 4.4523 -1.0388 10 6 4.3816 4.3095 1.3623 11 1 5.2226 3.8480 1.8586 12 6 3.9375 5.5500 1.7683 13 7 2.9131 6.1118 1.1642 14 14 4.7914 6.4335 3.1753 15 1 6.2167 6.6596 2.8254 16 1 4.1277 7.7401 3.4149 17 1 4.7089 5.6032 4.4037 18 7 4.2024 -0.0456 -0.0003 19 6 3.4956 -1.1573 0.0044 20 6 4.2140 -2.4821 0.0092 21 7 2.1778 -1.1432 0.0049 22 1 -0.3633 0.0042 1.0276 23 1 -0.3632 0.8879 -0.5175 24 1 -0.3633 -0.8921 -0.5103 25 1 1.6863 2.1380 0.0004 26 1 6.3144 2.1380 0.6993 27 1 6.0205 1.4052 -0.8960 28 1 6.1149 3.1751 -0.7334 29 1 4.8256 4.6178 -1.2950 30 1 3.2811 3.9370 -1.8601 31 1 3.2916 5.4113 -0.8632 32 1 2.6008 6.9846 1.4495 33 1 4.3876 -2.7975 1.0381 34 1 3.6047 -3.2277 -0.5015 35 1 5.1694 -2.3792 -0.5053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096263.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:46 Heat of formation + Delta-G solvation = 45.552207 kcal Electronic energy + Delta-G solvation = -16700.598804 eV Core-core repulsion = 14119.694457 eV Total energy + Delta-G solvation = -2580.904347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36675 -36.92722 -33.94723 -33.24295 -31.52695 -29.24035 -28.75797 -27.83237 -25.37581 -25.25759 -22.43215 -21.29458 -19.58830 -17.19701 -16.36130 -16.20041 -14.93177 -14.85327 -14.40479 -13.88952 -13.50212 -13.47571 -13.08187 -12.64793 -12.50936 -12.14152 -11.92153 -11.88888 -11.62997 -11.35727 -11.16542 -10.95301 -10.80182 -10.53142 -10.27409 -10.05835 -9.90120 -9.22237 -8.91039 -8.56792 -8.55867 -7.00067 -6.20368 -4.29673 1.65696 2.04316 3.21559 3.26366 3.28942 3.73547 4.29261 4.43297 4.51028 4.80961 5.09999 5.32927 5.58110 5.76161 5.79075 5.83859 5.85265 5.90265 6.02246 6.14560 6.23800 6.25472 6.37197 6.46389 6.62629 6.76109 6.89288 6.98033 7.26554 7.40839 7.59312 7.81969 7.97052 8.19367 8.36106 8.73483 8.95642 9.37913 10.83717 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029407 B = 0.007066 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.925245 B = 3961.758038 C = 4315.783210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.189 3.811 3 C -0.295 4.295 4 C 0.446 3.554 5 N -0.570 5.570 6 C 0.109 3.891 7 C 0.266 3.734 8 H 0.053 0.947 9 C -0.150 4.150 10 C -0.529 4.529 11 H 0.062 0.938 12 C 0.067 3.933 13 N -0.889 5.889 14 Si 0.901 3.099 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.276 1.276 18 N -0.592 5.592 19 C 0.349 3.651 20 C -0.077 4.077 21 N -0.582 5.582 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.143 0.857 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.013 0.987 31 H 0.096 0.904 32 H 0.266 0.734 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -9.030 -3.111 9.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.049 3.951 3 C -0.324 4.324 4 C 0.201 3.799 5 N -0.278 5.278 6 C -0.034 4.034 7 C 0.166 3.834 8 H 0.071 0.929 9 C -0.209 4.209 10 C -0.568 4.568 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.527 5.527 14 Si 0.729 3.271 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.202 1.202 18 N -0.319 5.319 19 C 0.079 3.921 20 C -0.136 4.136 21 N -0.305 5.305 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.161 0.839 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.226 -9.424 -3.107 9.926 hybrid contribution 0.099 1.532 0.863 1.761 sum -0.127 -7.892 -2.244 8.206 Atomic orbital electron populations 1.20663 0.88861 1.03115 1.02995 1.21189 0.96629 0.87851 0.89433 1.22084 0.94099 1.00626 1.15571 1.18671 0.88412 0.86601 0.86227 1.47230 1.07178 1.04066 1.69347 1.21337 0.80829 1.01116 1.00124 1.19076 0.94043 0.76587 0.93730 0.92901 1.22140 0.99825 1.02970 0.95961 1.21283 1.16595 1.02662 1.16247 0.92008 1.24880 0.94944 0.96933 0.96844 1.69849 1.24939 1.16935 1.40976 0.86498 0.79668 0.78712 0.82252 1.20088 1.21043 1.20180 1.67791 1.41258 0.97496 1.25359 1.22692 0.86680 0.93546 0.89144 1.20427 0.99533 0.90487 1.03106 1.67978 1.09251 1.29964 1.23332 0.90364 0.90618 0.90702 0.83928 0.93786 0.92446 0.91496 0.94797 0.96781 0.88583 0.92439 0.90374 0.90292 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.21 36.01 0.37 -0.97 16 2 C 0.19 3.42 6.82 -82.33 -0.56 2.86 16 3 C -0.30 -5.96 8.98 -39.11 -0.35 -6.31 16 4 C 0.45 9.61 7.34 -154.78 -1.14 8.48 16 5 N -0.57 -12.61 2.86 -175.23 -0.50 -13.11 16 6 C 0.11 2.14 9.41 59.85 0.56 2.70 16 7 C 0.27 6.42 2.50 -69.08 -0.17 6.25 16 8 H 0.05 1.36 5.58 -51.93 -0.29 1.07 16 9 C -0.15 -3.45 9.04 37.15 0.34 -3.11 16 10 C -0.53 -13.90 8.31 -34.44 -0.29 -14.19 16 11 H 0.06 1.65 7.33 -52.48 -0.38 1.26 16 12 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 13 N -0.89 -23.83 11.32 55.43 0.63 -23.21 16 14 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 N -0.59 -12.02 9.31 -9.97 -0.09 -12.11 16 19 C 0.35 6.37 7.64 -157.24 -1.20 5.17 16 20 C -0.08 -1.02 10.32 36.01 0.37 -0.64 16 21 N -0.58 -10.76 10.27 -7.07 -0.07 -10.83 16 22 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.14 2.88 6.10 -52.48 -0.32 2.56 16 26 H 0.04 0.86 8.00 -51.93 -0.42 0.45 16 27 H 0.06 1.04 7.59 -51.93 -0.39 0.64 16 28 H 0.07 1.27 6.74 -51.93 -0.35 0.92 16 29 H 0.03 0.74 6.90 -51.93 -0.36 0.39 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 2.39 6.07 -51.93 -0.32 2.07 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 290.04 15.07 4.37 4.37 Total: -1.00 -28.69 290.04 -7.77 -36.46 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.92 Total: 1.00 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.16 Total: 1.88 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.04 Total: -59.26 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.69 -7.77 -36.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096263.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.014 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds