Wall clock time and date at job start Sun Mar 29 2020 21:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38114 * 120.40475 * 2 1 4 4 C 1.39623 * 118.33642 * 180.23760 * 3 2 1 5 5 N 1.38538 * 120.53256 * 179.80100 * 4 3 2 6 6 C 1.46501 * 120.00041 * 190.69930 * 5 4 3 7 7 C 1.46506 * 120.00067 * 10.70298 * 5 4 3 8 8 H 1.09005 * 109.46805 * 5.61272 * 7 5 4 9 9 C 1.52994 * 109.46972 * 245.60962 * 7 5 4 10 10 C 1.50704 * 109.47135 * 125.60972 * 7 5 4 11 11 H 1.08003 * 119.99702 * 359.97438 * 10 7 5 12 12 C 1.37870 * 120.00045 * 180.02562 * 10 7 5 13 13 N 1.31526 * 119.99936 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 120.00273 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.46904 * 59.99422 * 14 12 10 16 16 H 1.48497 * 109.47317 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46725 * 299.99830 * 14 12 10 18 18 N 1.32993 * 118.93223 * 359.53330 * 4 3 2 19 19 C 1.31742 * 120.69003 * 0.24382 * 18 4 3 20 20 C 1.50705 * 119.08433 * 179.97438 * 19 18 4 21 21 N 1.31790 * 121.83174 * 359.97438 * 19 18 4 22 22 H 1.08994 * 109.46890 * 270.23622 * 1 2 3 23 23 H 1.09003 * 109.46470 * 30.23460 * 1 2 3 24 24 H 1.09004 * 109.47131 * 150.23056 * 1 2 3 25 25 H 1.08007 * 120.83020 * 0.02562 * 3 2 1 26 26 H 1.08993 * 109.47095 * 270.00197 * 6 5 4 27 27 H 1.08997 * 109.46946 * 30.00646 * 6 5 4 28 28 H 1.08998 * 109.47087 * 150.00443 * 6 5 4 29 29 H 1.08999 * 109.47215 * 299.99705 * 9 7 5 30 30 H 1.08997 * 109.47349 * 60.00119 * 9 7 5 31 31 H 1.09004 * 109.47029 * 179.97438 * 9 7 5 32 32 H 0.96994 * 119.99888 * 180.02562 * 13 12 10 33 33 H 1.09007 * 109.46693 * 90.00594 * 20 19 18 34 34 H 1.08993 * 109.47201 * 210.00073 * 20 19 18 35 35 H 1.08993 * 109.47155 * 330.00997 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1912 0.0000 4 6 3.6014 1.1408 -0.0051 5 7 4.3478 2.3079 -0.0095 6 6 5.7918 2.2530 -0.2503 7 6 3.6931 3.5971 0.2268 8 1 2.6466 3.4315 0.4831 9 6 3.7791 4.4523 -1.0388 10 6 4.3816 4.3095 1.3623 11 1 5.2226 3.8480 1.8586 12 6 3.9375 5.5500 1.7683 13 7 2.9131 6.1118 1.1642 14 14 4.7914 6.4335 3.1753 15 1 6.2167 6.6596 2.8254 16 1 4.1277 7.7401 3.4149 17 1 4.7089 5.6032 4.4037 18 7 4.2024 -0.0456 -0.0003 19 6 3.4956 -1.1573 0.0044 20 6 4.2140 -2.4821 0.0092 21 7 2.1778 -1.1432 0.0049 22 1 -0.3633 0.0042 1.0276 23 1 -0.3632 0.8879 -0.5175 24 1 -0.3633 -0.8921 -0.5103 25 1 1.6863 2.1380 0.0004 26 1 6.3144 2.1380 0.6993 27 1 6.0205 1.4052 -0.8960 28 1 6.1149 3.1751 -0.7334 29 1 4.8256 4.6178 -1.2950 30 1 3.2811 3.9370 -1.8601 31 1 3.2916 5.4113 -0.8632 32 1 2.6008 6.9846 1.4495 33 1 4.3876 -2.7975 1.0381 34 1 3.6047 -3.2277 -0.5015 35 1 5.1694 -2.3792 -0.5053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096263.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:45 Heat of formation + Delta-G solvation = 30.164830 kcal Electronic energy + Delta-G solvation = -16701.266051 eV Core-core repulsion = 14119.694457 eV Total energy + Delta-G solvation = -2581.571594 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.84955 -38.60617 -35.48418 -34.92361 -33.14679 -31.02015 -29.92959 -29.24016 -27.33882 -26.81006 -24.06846 -22.69106 -21.30029 -18.83000 -18.09546 -17.93611 -16.71632 -16.36460 -15.93541 -15.42073 -15.08880 -15.05616 -14.36823 -14.15057 -13.82014 -13.49550 -13.23701 -13.18246 -13.09353 -12.94897 -12.90111 -12.77388 -12.56640 -12.31837 -12.15396 -11.62202 -11.49086 -11.08418 -10.56751 -10.39003 -10.06899 -8.67722 -8.17621 -6.35799 0.20125 0.50746 1.40579 1.41055 1.48918 2.10706 2.40944 2.96332 3.07693 3.23788 3.43138 3.87606 4.29005 4.42011 4.49431 4.52272 4.65784 4.74253 4.75544 4.78992 4.81995 4.86799 4.96163 4.97337 5.00820 5.06793 5.21374 5.33191 5.57145 5.66194 5.75592 5.96771 6.10379 6.50741 6.65330 6.77709 7.33502 7.46221 8.83170 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029407 B = 0.007066 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.925245 B = 3961.758038 C = 4315.783210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.193 3.807 3 C -0.320 4.320 4 C 0.426 3.574 5 N -0.583 5.583 6 C 0.115 3.885 7 C 0.273 3.727 8 H 0.032 0.968 9 C -0.137 4.137 10 C -0.546 4.546 11 H 0.052 0.948 12 C 0.026 3.974 13 N -0.909 5.909 14 Si 0.959 3.041 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.279 1.279 18 N -0.604 5.604 19 C 0.339 3.661 20 C -0.073 4.073 21 N -0.585 5.585 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.134 0.866 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.024 0.976 31 H 0.076 0.924 32 H 0.268 0.732 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.691 -10.186 -2.983 10.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 C -0.348 4.348 4 C 0.182 3.818 5 N -0.292 5.292 6 C -0.028 4.028 7 C 0.171 3.829 8 H 0.050 0.950 9 C -0.195 4.195 10 C -0.584 4.584 11 H 0.070 0.930 12 C -0.174 4.174 13 N -0.548 5.548 14 Si 0.784 3.216 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.204 1.204 18 N -0.332 5.332 19 C 0.070 3.930 20 C -0.131 4.131 21 N -0.308 5.308 22 H 0.110 0.890 23 H 0.106 0.894 24 H 0.111 0.889 25 H 0.152 0.848 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.229 -10.610 -2.989 11.026 hybrid contribution 0.050 1.777 0.814 1.955 sum -0.179 -8.833 -2.175 9.099 Atomic orbital electron populations 1.20783 0.85650 1.04588 1.04270 1.21868 0.98726 0.87001 0.87213 1.22159 0.93925 1.01231 1.17526 1.18949 0.89061 0.86952 0.86825 1.47116 1.07936 1.03680 1.70488 1.21344 0.79653 1.01756 1.00047 1.18788 0.92871 0.77628 0.93572 0.95040 1.21947 0.99884 1.01800 0.95908 1.21492 1.16593 1.03215 1.17146 0.92989 1.25562 0.95504 0.97514 0.98869 1.69948 1.25718 1.17177 1.41915 0.85601 0.78959 0.77689 0.79345 1.19460 1.20357 1.20417 1.67865 1.41683 0.97562 1.26043 1.23719 0.87091 0.94676 0.87526 1.20588 0.99829 0.88176 1.04500 1.68160 1.09453 1.29803 1.23393 0.88961 0.89431 0.88948 0.84833 0.94386 0.91127 0.91291 0.94387 0.95647 0.90566 0.92293 0.88825 0.88347 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.39 10.21 71.24 0.73 -1.67 16 2 C 0.19 6.76 6.82 42.42 0.29 7.05 16 3 C -0.32 -13.01 8.98 22.57 0.20 -12.80 16 4 C 0.43 18.44 7.34 133.16 0.98 19.42 16 5 N -0.58 -26.07 2.86 -708.31 -2.02 -28.09 16 6 C 0.11 4.49 9.41 127.77 1.20 5.69 16 7 C 0.27 13.43 2.50 44.24 0.11 13.54 16 8 H 0.03 1.69 5.58 -2.38 -0.01 1.67 16 9 C -0.14 -6.34 9.04 71.98 0.65 -5.69 16 10 C -0.55 -29.04 8.31 25.60 0.21 -28.83 16 11 H 0.05 2.81 7.33 -2.91 -0.02 2.78 16 12 C 0.03 1.38 5.30 84.65 0.45 1.83 16 13 N -0.91 -49.13 11.32 21.45 0.24 -48.88 16 14 Si 0.96 42.08 29.54 68.60 2.03 44.10 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 18 N -0.60 -24.11 9.31 -185.44 -1.73 -25.84 16 19 C 0.34 11.82 7.64 138.77 1.06 12.88 16 20 C -0.07 -1.72 10.32 71.24 0.74 -0.99 16 21 N -0.59 -20.62 10.27 -176.28 -1.81 -22.43 16 22 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.09 1.98 8.10 -2.39 -0.02 1.96 16 24 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.13 5.57 6.10 -2.91 -0.02 5.56 16 26 H 0.04 1.49 8.00 -2.39 -0.02 1.47 16 27 H 0.07 2.52 7.59 -2.39 -0.02 2.50 16 28 H 0.07 2.61 6.74 -2.39 -0.02 2.59 16 29 H 0.04 1.68 6.90 -2.39 -0.02 1.66 16 30 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 3.85 6.07 -2.38 -0.01 3.84 16 32 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 33 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -60.67 290.04 4.40 -56.26 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.08 Total: 14.44 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 6.62 Total: 10.43 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -5.32 Total: -125.24 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -60.67 4.40 -56.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096263.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.429 kcal (2) G-P(sol) polarization free energy of solvation -60.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds