Wall clock time and date at job start Sun Mar 29 2020 22:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47328 * 2 1 4 4 H 1.08996 * 109.46951 * 305.12274 * 3 2 1 5 5 C 1.50699 * 109.47292 * 185.12222 * 3 2 1 6 6 H 1.08004 * 119.99707 * 240.00174 * 5 3 2 7 7 C 1.37876 * 120.00118 * 59.99514 * 5 3 2 8 8 N 1.31511 * 119.99818 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00016 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47145 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47063 * 120.00410 * 9 7 5 12 12 H 1.48498 * 109.47206 * 240.00291 * 9 7 5 13 13 N 1.46897 * 109.47154 * 65.11897 * 3 2 1 14 14 C 1.46898 * 111.00308 * 204.50640 * 13 3 2 15 15 H 1.09004 * 109.47164 * 324.54119 * 14 13 3 16 16 C 1.52999 * 109.47194 * 84.53783 * 14 13 3 17 17 C 1.50706 * 109.47262 * 204.53913 * 14 13 3 18 18 C 1.38392 * 119.99701 * 154.97562 * 17 14 13 19 19 N 1.32127 * 119.99327 * 180.02562 * 18 17 14 20 20 C 1.32158 * 120.00101 * 359.72957 * 19 18 17 21 21 C 1.38345 * 119.99688 * 0.52493 * 20 19 18 22 22 N 1.32117 * 119.99878 * 334.99733 * 17 14 13 23 23 H 1.09002 * 109.47545 * 184.50975 * 1 2 3 24 24 H 1.09004 * 109.47247 * 304.50636 * 1 2 3 25 25 H 1.09004 * 109.47210 * 64.50916 * 1 2 3 26 26 H 1.09002 * 109.47062 * 240.00088 * 2 1 3 27 27 H 1.08999 * 109.46935 * 120.00038 * 2 1 3 28 28 H 0.96998 * 119.99919 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00402 * 80.54876 * 13 3 2 30 30 H 1.08996 * 109.47224 * 304.58450 * 16 14 13 31 31 H 1.08996 * 109.47036 * 64.58537 * 16 14 13 32 32 H 1.09003 * 109.47320 * 184.58490 * 16 14 13 33 33 H 1.07992 * 120.00626 * 0.04744 * 18 17 14 34 34 H 1.07993 * 119.99867 * 180.27720 * 20 19 18 35 35 H 1.08006 * 119.99609 * 179.75125 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6037 1.9821 -0.8405 5 6 3.5416 1.4443 -0.1268 6 1 4.1485 1.8884 0.6484 7 6 4.1408 0.8791 -1.2325 8 7 3.4018 0.3388 -2.1767 9 14 6.0021 0.8821 -1.3901 10 1 6.5983 1.5464 -0.2032 11 1 6.4941 -0.5166 -1.4732 12 1 6.3937 1.6184 -2.6188 13 7 1.6539 2.0984 1.2564 14 6 1.5861 3.5563 1.0901 15 1 2.3647 3.8797 0.3990 16 6 0.2154 3.9427 0.5309 17 6 1.7905 4.2244 2.4254 18 6 2.2790 5.5178 2.4844 19 7 2.4586 6.1033 3.6552 20 6 2.1667 5.4556 4.7696 21 6 1.6833 4.1607 4.7106 22 7 1.5036 3.5750 3.5397 23 1 -0.3634 -1.0245 0.0808 24 1 -0.3634 0.5822 0.8469 25 1 -0.3634 0.4423 -0.9277 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8233 -0.0585 -2.9548 29 1 2.2845 1.8486 2.0035 30 1 0.0335 3.3966 -0.3946 31 1 -0.5571 3.6929 1.2581 32 1 0.1934 5.0140 0.3310 33 1 2.5131 6.0488 1.5737 34 1 2.3092 5.9357 5.7264 35 1 1.4485 3.6299 5.6215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070025809.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:05 Heat of formation + Delta-G solvation = 39.845691 kcal Electronic energy + Delta-G solvation = -16673.968154 eV Core-core repulsion = 14092.816354 eV Total energy + Delta-G solvation = -2581.151800 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91156 -36.78269 -34.25035 -33.35874 -31.64787 -30.40463 -28.70000 -26.02591 -24.68502 -24.18424 -22.69433 -20.46714 -19.39225 -17.27305 -16.92985 -16.61381 -15.74644 -14.78306 -14.71513 -14.27383 -13.83067 -13.36063 -12.87532 -12.75772 -12.13897 -12.02476 -11.48339 -11.39820 -11.30318 -11.12794 -10.93041 -10.89890 -10.69477 -10.63308 -10.16019 -9.59592 -9.55976 -9.11970 -8.95198 -8.79958 -8.38000 -7.23715 -6.00746 -4.14318 0.93152 1.32723 3.24274 3.33211 3.36399 3.87318 4.22600 4.37815 4.41132 4.62291 4.93254 5.18261 5.25825 5.42491 5.55259 5.61928 5.88419 5.97966 6.23401 6.43305 6.47526 6.53120 6.56590 6.74362 6.76857 7.13915 7.22820 7.41140 7.47797 7.60606 7.77597 7.98081 8.10578 8.16534 8.34537 8.68379 8.99929 9.53787 10.98684 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.007693 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.673460 B = 3638.579989 C = 4312.355661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C 0.212 3.788 4 H 0.035 0.965 5 C -0.546 4.546 6 H 0.051 0.949 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.670 5.670 14 C 0.137 3.863 15 H 0.069 0.931 16 C -0.129 4.129 17 C 0.098 3.902 18 C 0.048 3.952 19 N -0.441 5.441 20 C 0.027 3.973 21 C 0.049 3.951 22 N -0.415 5.415 23 H 0.023 0.977 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.089 0.911 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.335 0.665 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 7.403 8.824 12.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C 0.105 3.895 4 H 0.053 0.947 5 C -0.586 4.586 6 H 0.069 0.931 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.301 5.301 14 C 0.025 3.975 15 H 0.086 0.914 16 C -0.188 4.188 17 C -0.043 4.043 18 C -0.113 4.113 19 N -0.155 5.155 20 C -0.133 4.133 21 C -0.111 4.111 22 N -0.130 5.130 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.108 0.892 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.153 0.847 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.184 0.816 34 H 0.180 0.820 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.671 7.215 8.546 12.121 hybrid contribution 2.121 0.178 -0.098 2.130 sum -2.551 7.393 8.448 11.512 Atomic orbital electron populations 1.21717 0.98965 0.98486 1.00400 1.21464 0.92169 0.99090 1.01582 1.19229 0.92633 0.91450 0.86229 0.94704 1.21916 0.92879 1.38333 1.05422 0.93056 1.24915 0.97802 0.94957 0.95712 1.69883 1.34675 1.38234 1.09358 0.86637 0.86222 0.77796 0.77918 1.20024 1.20924 1.20994 1.60882 1.56459 1.03095 1.09640 1.20337 0.97820 0.91055 0.88248 0.91371 1.21750 0.96024 0.99384 1.01617 1.22750 0.92954 0.92453 0.96110 1.23584 0.96998 0.93861 0.96826 1.68405 1.12231 1.36278 0.98633 1.23656 0.97803 0.93945 0.97859 1.23827 0.96236 0.93797 0.97202 1.68379 1.11311 1.35586 0.97741 0.95757 0.92924 0.94623 0.89229 0.95168 0.92914 0.84717 0.91267 0.92642 0.93560 0.81606 0.81957 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.49 16 2 C -0.10 -2.49 5.45 -26.73 -0.15 -2.64 16 3 C 0.21 5.13 1.78 -68.87 -0.12 5.00 16 4 H 0.04 0.91 7.06 -51.93 -0.37 0.55 16 5 C -0.55 -14.51 8.24 -34.44 -0.28 -14.79 16 6 H 0.05 1.38 7.75 -52.48 -0.41 0.97 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.59 11.29 55.43 0.63 -23.97 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.67 -13.98 5.18 -102.17 -0.53 -14.51 16 14 C 0.14 2.50 2.69 -68.86 -0.19 2.31 16 15 H 0.07 1.33 7.60 -51.93 -0.39 0.94 16 16 C -0.13 -2.10 9.40 37.16 0.35 -1.75 16 17 C 0.10 1.62 5.70 -82.41 -0.47 1.15 16 18 C 0.05 0.71 10.90 -17.37 -0.19 0.52 16 19 N -0.44 -6.37 10.50 -13.06 -0.14 -6.51 16 20 C 0.03 0.32 11.23 -17.37 -0.19 0.13 16 21 C 0.05 0.63 11.22 -17.37 -0.20 0.43 16 22 N -0.42 -6.78 9.47 -9.28 -0.09 -6.87 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 1.06 7.64 -51.93 -0.40 0.66 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.34 7.33 7.58 -39.29 -0.30 7.03 16 30 H 0.07 1.20 7.34 -51.93 -0.38 0.82 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.17 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.17 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 293.15 15.07 4.42 4.42 Total: -1.00 -28.89 293.15 -6.97 -35.86 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.07 Total: 5.93 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.17 Total: -10.35 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.13 Total: -51.85 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.89 -6.97 -35.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070025809.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.706 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds