Wall clock time and date at job start Sun Mar 29 2020 22:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47328 * 2 1 4 4 H 1.08996 * 109.46951 * 305.12274 * 3 2 1 5 5 C 1.50699 * 109.47292 * 185.12222 * 3 2 1 6 6 H 1.08004 * 119.99707 * 240.00174 * 5 3 2 7 7 C 1.37876 * 120.00118 * 59.99514 * 5 3 2 8 8 N 1.31511 * 119.99818 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00016 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47145 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47063 * 120.00410 * 9 7 5 12 12 H 1.48498 * 109.47206 * 240.00291 * 9 7 5 13 13 N 1.46897 * 109.47154 * 65.11897 * 3 2 1 14 14 C 1.46898 * 111.00308 * 204.50640 * 13 3 2 15 15 H 1.09004 * 109.47164 * 324.54119 * 14 13 3 16 16 C 1.52999 * 109.47194 * 84.53783 * 14 13 3 17 17 C 1.50706 * 109.47262 * 204.53913 * 14 13 3 18 18 C 1.38392 * 119.99701 * 154.97562 * 17 14 13 19 19 N 1.32127 * 119.99327 * 180.02562 * 18 17 14 20 20 C 1.32158 * 120.00101 * 359.72957 * 19 18 17 21 21 C 1.38345 * 119.99688 * 0.52493 * 20 19 18 22 22 N 1.32117 * 119.99878 * 334.99733 * 17 14 13 23 23 H 1.09002 * 109.47545 * 184.50975 * 1 2 3 24 24 H 1.09004 * 109.47247 * 304.50636 * 1 2 3 25 25 H 1.09004 * 109.47210 * 64.50916 * 1 2 3 26 26 H 1.09002 * 109.47062 * 240.00088 * 2 1 3 27 27 H 1.08999 * 109.46935 * 120.00038 * 2 1 3 28 28 H 0.96998 * 119.99919 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00402 * 80.54876 * 13 3 2 30 30 H 1.08996 * 109.47224 * 304.58450 * 16 14 13 31 31 H 1.08996 * 109.47036 * 64.58537 * 16 14 13 32 32 H 1.09003 * 109.47320 * 184.58490 * 16 14 13 33 33 H 1.07992 * 120.00626 * 0.04744 * 18 17 14 34 34 H 1.07993 * 119.99867 * 180.27720 * 20 19 18 35 35 H 1.08006 * 119.99609 * 179.75125 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6037 1.9821 -0.8405 5 6 3.5416 1.4443 -0.1268 6 1 4.1485 1.8884 0.6484 7 6 4.1408 0.8791 -1.2325 8 7 3.4018 0.3388 -2.1767 9 14 6.0021 0.8821 -1.3901 10 1 6.5983 1.5464 -0.2032 11 1 6.4941 -0.5166 -1.4732 12 1 6.3937 1.6184 -2.6188 13 7 1.6539 2.0984 1.2564 14 6 1.5861 3.5563 1.0901 15 1 2.3647 3.8797 0.3990 16 6 0.2154 3.9427 0.5309 17 6 1.7905 4.2244 2.4254 18 6 2.2790 5.5178 2.4844 19 7 2.4586 6.1033 3.6552 20 6 2.1667 5.4556 4.7696 21 6 1.6833 4.1607 4.7106 22 7 1.5036 3.5750 3.5397 23 1 -0.3634 -1.0245 0.0808 24 1 -0.3634 0.5822 0.8469 25 1 -0.3634 0.4423 -0.9277 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8233 -0.0585 -2.9548 29 1 2.2845 1.8486 2.0035 30 1 0.0335 3.3966 -0.3946 31 1 -0.5571 3.6929 1.2581 32 1 0.1934 5.0140 0.3310 33 1 2.5131 6.0488 1.5737 34 1 2.3092 5.9357 5.7264 35 1 1.4485 3.6299 5.6215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070025809.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:04 Heat of formation + Delta-G solvation = 20.632815 kcal Electronic energy + Delta-G solvation = -16674.801287 eV Core-core repulsion = 14092.816354 eV Total energy + Delta-G solvation = -2581.984933 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.01432 -38.42901 -35.72848 -34.70025 -33.52271 -31.78907 -30.19723 -27.90580 -25.88206 -25.39750 -24.44917 -21.90464 -21.22119 -18.73075 -18.43012 -17.83153 -17.05041 -16.69246 -15.95620 -15.73552 -15.29872 -14.94631 -14.55767 -14.02786 -13.72853 -13.49074 -13.20910 -13.11450 -12.91227 -12.57800 -12.55270 -12.44411 -12.14989 -12.08540 -12.04107 -11.49554 -11.41970 -10.97888 -10.44877 -10.12523 -9.92771 -9.01085 -8.04903 -6.27551 -0.12796 0.23653 1.34986 1.38392 1.47447 2.38937 2.79900 3.12734 3.15152 3.33369 3.49288 3.80723 3.95368 4.35507 4.43254 4.52227 4.57146 4.62522 4.65946 4.80971 4.87453 5.00295 5.07012 5.20951 5.33405 5.45996 5.50458 5.54117 5.66000 5.80070 6.11762 6.22060 6.33256 6.46248 6.78763 6.95390 7.03231 7.44059 8.90782 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.007693 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.673460 B = 3638.579989 C = 4312.355661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C 0.222 3.778 4 H 0.010 0.990 5 C -0.559 4.559 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.279 1.279 13 N -0.661 5.661 14 C 0.138 3.862 15 H 0.048 0.952 16 C -0.120 4.120 17 C 0.077 3.923 18 C 0.042 3.958 19 N -0.457 5.457 20 C 0.041 3.959 21 C 0.050 3.950 22 N -0.445 5.445 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.023 0.977 28 H 0.262 0.738 29 H 0.328 0.672 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.178 0.822 34 H 0.206 0.794 35 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.945 8.302 10.586 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 C 0.113 3.887 4 H 0.028 0.972 5 C -0.598 4.598 6 H 0.060 0.940 7 C -0.176 4.176 8 N -0.546 5.546 9 Si 0.772 3.228 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.291 5.291 14 C 0.026 3.974 15 H 0.065 0.935 16 C -0.178 4.178 17 C -0.063 4.063 18 C -0.117 4.117 19 N -0.171 5.171 20 C -0.119 4.119 21 C -0.111 4.111 22 N -0.161 5.161 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.145 0.855 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.195 0.805 34 H 0.223 0.777 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.613 8.126 10.283 13.895 hybrid contribution 2.090 -0.057 -0.511 2.152 sum -2.524 8.069 9.772 12.922 Atomic orbital electron populations 1.21560 0.96364 0.99819 1.00464 1.21340 0.94468 0.98444 0.99759 1.18983 0.91258 0.91623 0.86827 0.97211 1.22169 0.94240 1.38120 1.05247 0.93960 1.25593 1.01724 0.94784 0.95538 1.69996 1.36163 1.38762 1.09725 0.85704 0.81494 0.77771 0.77805 1.19988 1.20563 1.20471 1.60823 1.55555 1.04982 1.07752 1.20282 0.98161 0.89327 0.89651 0.93461 1.21659 0.94861 1.00807 1.00494 1.22373 0.95303 0.93224 0.95369 1.23685 0.96821 0.93345 0.97804 1.68494 1.12873 1.36701 0.99056 1.24381 0.95202 0.93606 0.98730 1.24459 0.95155 0.94342 0.97101 1.68281 1.12255 1.36744 0.98772 0.93817 0.92396 0.94852 0.92026 0.95843 0.92822 0.85462 0.92988 0.92660 0.90955 0.80482 0.77702 0.78169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.85 71.98 0.71 -4.39 16 2 C -0.10 -4.93 5.45 30.59 0.17 -4.76 16 3 C 0.22 11.00 1.78 44.17 0.08 11.08 16 4 H 0.01 0.54 7.06 -2.39 -0.02 0.52 16 5 C -0.56 -30.34 8.24 25.60 0.21 -30.13 16 6 H 0.04 2.32 7.75 -2.91 -0.02 2.30 16 7 C 0.02 1.31 5.29 84.65 0.45 1.76 16 8 N -0.91 -51.48 11.29 21.45 0.24 -51.24 16 9 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 N -0.66 -28.09 5.18 -477.17 -2.47 -30.56 16 14 C 0.14 5.08 2.69 44.17 0.12 5.20 16 15 H 0.05 1.92 7.60 -2.39 -0.02 1.91 16 16 C -0.12 -3.90 9.40 71.98 0.68 -3.22 16 17 C 0.08 2.50 5.70 42.55 0.24 2.74 16 18 C 0.04 1.22 10.90 84.68 0.92 2.14 16 19 N -0.46 -12.14 10.50 -195.23 -2.05 -14.19 16 20 C 0.04 0.85 11.23 84.67 0.95 1.80 16 21 C 0.05 1.13 11.22 84.67 0.95 2.08 16 22 N -0.45 -13.94 9.47 -183.28 -1.74 -15.67 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 2.29 7.64 -2.38 -0.02 2.27 16 25 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.06 3.35 5.95 -2.39 -0.01 3.34 16 27 H 0.02 1.12 8.14 -2.39 -0.02 1.11 16 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.33 14.61 7.58 -89.69 -0.68 13.93 16 30 H 0.05 1.84 7.34 -2.39 -0.02 1.82 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.18 4.41 8.06 -2.91 -0.02 4.38 16 34 H 0.21 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -62.61 293.15 1.88 -60.73 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.40 Total: 21.09 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 5.48 Total: -15.72 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -6.02 Total: -111.66 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -62.61 1.88 -60.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070025809.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.366 kcal (2) G-P(sol) polarization free energy of solvation -62.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds