Wall clock time and date at job start Sun Mar 29 2020 22:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47361 * 2 1 4 4 H 1.09001 * 109.46855 * 174.26964 * 3 2 1 5 5 C 1.50700 * 109.47122 * 54.27485 * 3 2 1 6 6 H 1.08005 * 119.99195 * 239.99860 * 5 3 2 7 7 C 1.37873 * 120.00286 * 59.99786 * 5 3 2 8 8 N 1.31512 * 120.00028 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99868 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46984 * 89.99836 * 9 7 5 11 11 H 1.48496 * 109.47074 * 210.00028 * 9 7 5 12 12 H 1.48501 * 109.47317 * 330.00014 * 9 7 5 13 13 N 1.46897 * 109.47375 * 294.26977 * 3 2 1 14 14 C 1.46897 * 111.00195 * 274.39639 * 13 3 2 15 15 H 1.08999 * 109.47568 * 35.97546 * 14 13 3 16 16 C 1.53007 * 109.47113 * 275.97715 * 14 13 3 17 17 C 1.50697 * 109.47303 * 155.97800 * 14 13 3 18 18 C 1.38396 * 119.99935 * 204.72240 * 17 14 13 19 19 N 1.32122 * 119.99696 * 179.77945 * 18 17 14 20 20 C 1.32151 * 119.99893 * 0.49696 * 19 18 17 21 21 C 1.38342 * 120.00385 * 359.73163 * 20 19 18 22 22 N 1.32117 * 120.00475 * 24.99926 * 17 14 13 23 23 H 1.09000 * 109.46949 * 298.84753 * 1 2 3 24 24 H 1.09006 * 109.46465 * 58.83766 * 1 2 3 25 25 H 1.08988 * 109.47354 * 178.83922 * 1 2 3 26 26 H 1.09002 * 109.47103 * 239.99794 * 2 1 3 27 27 H 1.09005 * 109.46503 * 120.00463 * 2 1 3 28 28 H 0.97001 * 119.99923 * 179.97438 * 8 7 5 29 29 H 1.00905 * 110.99492 * 38.34476 * 13 3 2 30 30 H 1.08999 * 109.46765 * 300.00323 * 16 14 13 31 31 H 1.08991 * 109.47329 * 180.02562 * 16 14 13 32 32 H 1.09002 * 109.46887 * 59.99212 * 16 14 13 33 33 H 1.07998 * 120.00131 * 0.02562 * 18 17 14 34 34 H 1.08007 * 120.00090 * 179.71628 * 20 19 18 35 35 H 1.07999 * 120.00194 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1253 1.4440 0.1026 5 6 1.4254 2.1926 1.1535 6 1 0.8180 3.0660 0.9671 7 6 1.6384 1.7640 2.4464 8 7 2.3776 0.7002 2.6732 9 14 0.8758 2.6935 3.8761 10 1 -0.4654 2.1298 4.1740 11 1 1.7453 2.5613 5.0726 12 1 0.7412 4.1285 3.5182 13 7 1.6667 2.0939 -1.2625 14 6 2.6614 1.8232 -2.3090 15 1 3.0434 0.8089 -2.1936 16 6 3.8157 2.8200 -2.1856 17 6 2.0170 1.9662 -3.6637 18 6 2.5437 1.2969 -4.7546 19 7 1.9761 1.4188 -5.9415 20 6 0.9113 2.1875 -6.0888 21 6 0.3877 2.8603 -4.9994 22 7 0.9525 2.7347 -3.8112 23 1 -0.3633 0.4958 0.9001 24 1 -0.3632 0.5318 -0.8795 25 1 -0.3633 -1.0273 -0.0208 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.5277 0.3989 3.5829 29 1 0.7448 1.8089 -1.5576 30 1 3.4336 3.8343 -2.3010 31 1 4.5535 2.6194 -2.9623 32 1 4.2817 2.7167 -1.2056 33 1 3.4162 0.6718 -4.6349 34 1 0.4501 2.2908 -7.0600 35 1 -0.4827 3.4883 -5.1197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070025813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:10 Heat of formation + Delta-G solvation = 45.295013 kcal Electronic energy + Delta-G solvation = -16699.774299 eV Core-core repulsion = 14118.858800 eV Total energy + Delta-G solvation = -2580.915500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.99381 -37.03729 -34.36883 -33.45930 -31.55488 -30.30600 -28.35269 -26.11381 -24.71532 -24.26516 -23.17665 -20.91852 -19.00005 -17.34242 -17.00644 -16.49165 -15.49917 -14.89887 -14.71689 -14.53367 -13.85688 -13.15769 -12.90570 -12.74581 -12.55415 -12.10940 -11.72103 -11.41261 -11.39962 -11.05210 -10.96068 -10.84328 -10.63167 -10.50823 -9.95759 -9.83778 -9.54680 -9.17296 -8.93254 -8.84015 -8.31375 -7.17059 -5.94740 -3.95285 0.85167 1.25649 3.34798 3.41618 3.46653 3.79843 4.14944 4.32997 4.45443 4.56988 4.85835 5.14280 5.34720 5.37399 5.47345 5.55076 5.77424 5.85759 6.19295 6.33167 6.36794 6.40952 6.46874 6.57626 6.74869 6.90643 7.26743 7.29191 7.38481 7.51136 7.72088 7.89224 7.96221 8.31877 8.60846 8.66313 9.11124 9.68264 11.12580 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.039256 B = 0.006150 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.102573 B = 4551.946960 C = 4572.883289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.213 3.787 4 H 0.035 0.965 5 C -0.484 4.484 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.665 5.665 14 C 0.133 3.867 15 H 0.055 0.945 16 C -0.130 4.130 17 C 0.095 3.905 18 C 0.046 3.954 19 N -0.440 5.440 20 C 0.028 3.972 21 C 0.051 3.949 22 N -0.413 5.413 23 H 0.067 0.933 24 H 0.028 0.972 25 H 0.021 0.979 26 H 0.008 0.992 27 H 0.093 0.907 28 H 0.258 0.742 29 H 0.334 0.666 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.978 1.000 -13.255 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.105 3.895 4 H 0.053 0.947 5 C -0.523 4.523 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.298 5.298 14 C 0.021 3.979 15 H 0.073 0.927 16 C -0.188 4.188 17 C -0.046 4.046 18 C -0.114 4.114 19 N -0.155 5.155 20 C -0.131 4.131 21 C -0.109 4.109 22 N -0.128 5.128 23 H 0.086 0.914 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.027 0.973 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.154 0.846 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.183 0.817 34 H 0.182 0.818 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.643 1.509 -12.930 13.034 hybrid contribution -0.668 -0.555 0.537 1.021 sum -1.311 0.954 -12.393 12.499 Atomic orbital electron populations 1.21560 0.97717 0.97930 1.01263 1.22136 0.95049 1.01301 1.00094 1.19298 0.96140 0.88464 0.85568 0.94672 1.21054 1.30238 1.11434 0.89578 0.91960 1.24898 0.95612 0.95203 0.98668 1.69879 1.39363 1.24184 1.20344 0.86580 0.78932 0.80416 0.81977 1.20933 1.21493 1.19916 1.60837 1.03347 1.63113 1.02497 1.20417 0.93951 0.97975 0.85577 0.92706 1.21753 0.95823 0.99415 1.01836 1.22719 0.92117 0.91901 0.97851 1.23568 1.00237 0.98899 0.88715 1.68405 1.08051 1.14431 1.24588 1.23681 0.93979 0.94830 1.00615 1.23863 0.99833 0.98109 0.89113 1.68399 1.07318 1.13165 1.23889 0.91422 0.95324 0.95984 0.97329 0.88844 0.93189 0.84582 0.92122 0.93685 0.91031 0.81661 0.81837 0.81618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.39 37.16 0.35 -2.42 16 2 C -0.15 -3.40 5.48 -26.73 -0.15 -3.54 16 3 C 0.21 5.16 2.14 -68.87 -0.15 5.01 16 4 H 0.04 0.93 7.04 -51.93 -0.37 0.56 16 5 C -0.48 -13.02 7.35 -34.44 -0.25 -13.27 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.06 1.53 5.23 -17.82 -0.09 1.44 16 8 N -0.90 -25.07 11.38 55.43 0.63 -24.44 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -14.09 5.78 -102.17 -0.59 -14.68 16 14 C 0.13 2.34 2.68 -68.86 -0.18 2.16 16 15 H 0.06 0.96 7.12 -51.93 -0.37 0.59 16 16 C -0.13 -2.14 9.37 37.16 0.35 -1.79 16 17 C 0.10 1.51 5.70 -82.41 -0.47 1.04 16 18 C 0.05 0.65 10.90 -17.37 -0.19 0.46 16 19 N -0.44 -6.00 10.50 -13.06 -0.14 -6.14 16 20 C 0.03 0.33 11.22 -17.38 -0.20 0.13 16 21 C 0.05 0.63 11.22 -17.37 -0.20 0.43 16 22 N -0.41 -6.65 9.48 -9.29 -0.09 -6.74 16 23 H 0.07 1.61 7.05 -51.93 -0.37 1.24 16 24 H 0.03 0.58 6.42 -51.93 -0.33 0.24 16 25 H 0.02 0.42 8.14 -51.94 -0.42 0.00 16 26 H 0.01 0.17 7.41 -51.93 -0.38 -0.21 16 27 H 0.09 2.43 6.24 -51.93 -0.32 2.10 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.33 7.13 5.74 -39.29 -0.23 6.91 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.28 7.36 -51.93 -0.38 0.90 16 33 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 35 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 287.81 15.07 4.34 4.34 Total: -1.00 -29.33 287.81 -6.88 -36.21 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.83 Total: 5.48 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -1.18 Total: -10.35 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.19 Total: -52.00 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.33 -6.88 -36.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070025813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.508 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds