Wall clock time and date at job start Sun Mar 29 2020 22:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47361 * 2 1 4 4 H 1.09001 * 109.46855 * 174.26964 * 3 2 1 5 5 C 1.50700 * 109.47122 * 54.27485 * 3 2 1 6 6 H 1.08005 * 119.99195 * 239.99860 * 5 3 2 7 7 C 1.37873 * 120.00286 * 59.99786 * 5 3 2 8 8 N 1.31512 * 120.00028 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99868 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46984 * 89.99836 * 9 7 5 11 11 H 1.48496 * 109.47074 * 210.00028 * 9 7 5 12 12 H 1.48501 * 109.47317 * 330.00014 * 9 7 5 13 13 N 1.46897 * 109.47375 * 294.26977 * 3 2 1 14 14 C 1.46897 * 111.00195 * 274.39639 * 13 3 2 15 15 H 1.08999 * 109.47568 * 35.97546 * 14 13 3 16 16 C 1.53007 * 109.47113 * 275.97715 * 14 13 3 17 17 C 1.50697 * 109.47303 * 155.97800 * 14 13 3 18 18 C 1.38396 * 119.99935 * 204.72240 * 17 14 13 19 19 N 1.32122 * 119.99696 * 179.77945 * 18 17 14 20 20 C 1.32151 * 119.99893 * 0.49696 * 19 18 17 21 21 C 1.38342 * 120.00385 * 359.73163 * 20 19 18 22 22 N 1.32117 * 120.00475 * 24.99926 * 17 14 13 23 23 H 1.09000 * 109.46949 * 298.84753 * 1 2 3 24 24 H 1.09006 * 109.46465 * 58.83766 * 1 2 3 25 25 H 1.08988 * 109.47354 * 178.83922 * 1 2 3 26 26 H 1.09002 * 109.47103 * 239.99794 * 2 1 3 27 27 H 1.09005 * 109.46503 * 120.00463 * 2 1 3 28 28 H 0.97001 * 119.99923 * 179.97438 * 8 7 5 29 29 H 1.00905 * 110.99492 * 38.34476 * 13 3 2 30 30 H 1.08999 * 109.46765 * 300.00323 * 16 14 13 31 31 H 1.08991 * 109.47329 * 180.02562 * 16 14 13 32 32 H 1.09002 * 109.46887 * 59.99212 * 16 14 13 33 33 H 1.07998 * 120.00131 * 0.02562 * 18 17 14 34 34 H 1.08007 * 120.00090 * 179.71628 * 20 19 18 35 35 H 1.07999 * 120.00194 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1253 1.4440 0.1026 5 6 1.4254 2.1926 1.1535 6 1 0.8180 3.0660 0.9671 7 6 1.6384 1.7640 2.4464 8 7 2.3776 0.7002 2.6732 9 14 0.8758 2.6935 3.8761 10 1 -0.4654 2.1298 4.1740 11 1 1.7453 2.5613 5.0726 12 1 0.7412 4.1285 3.5182 13 7 1.6667 2.0939 -1.2625 14 6 2.6614 1.8232 -2.3090 15 1 3.0434 0.8089 -2.1936 16 6 3.8157 2.8200 -2.1856 17 6 2.0170 1.9662 -3.6637 18 6 2.5437 1.2969 -4.7546 19 7 1.9761 1.4188 -5.9415 20 6 0.9113 2.1875 -6.0888 21 6 0.3877 2.8603 -4.9994 22 7 0.9525 2.7347 -3.8112 23 1 -0.3633 0.4958 0.9001 24 1 -0.3632 0.5318 -0.8795 25 1 -0.3633 -1.0273 -0.0208 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.5277 0.3989 3.5829 29 1 0.7448 1.8089 -1.5576 30 1 3.4336 3.8343 -2.3010 31 1 4.5535 2.6194 -2.9623 32 1 4.2817 2.7167 -1.2056 33 1 3.4162 0.6718 -4.6349 34 1 0.4501 2.2908 -7.0600 35 1 -0.4827 3.4883 -5.1197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070025813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:10 Heat of formation + Delta-G solvation = 25.357338 kcal Electronic energy + Delta-G solvation = -16700.638862 eV Core-core repulsion = 14118.858800 eV Total energy + Delta-G solvation = -2581.780062 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.03938 -38.67375 -35.80642 -34.73708 -33.38991 -31.65005 -29.88565 -28.00544 -25.88663 -25.54897 -24.84616 -22.36125 -20.76071 -18.51342 -18.38125 -17.75993 -17.07862 -16.62261 -16.15826 -15.76161 -15.35900 -14.63409 -14.49852 -14.37416 -14.02001 -13.73884 -13.20804 -12.98853 -12.79011 -12.54057 -12.48386 -12.42350 -12.28938 -12.10133 -11.76639 -11.71449 -11.42130 -10.95071 -10.39785 -10.14805 -9.92769 -8.86633 -8.02834 -6.09801 -0.14427 0.22772 1.43562 1.45425 1.55351 2.47803 2.78748 3.11611 3.26174 3.32152 3.47772 3.79471 3.92224 4.29675 4.42424 4.44503 4.49244 4.55061 4.59830 4.62270 4.73493 4.86957 4.98479 5.10891 5.33421 5.40058 5.43309 5.49518 5.67235 5.76043 5.87516 6.33231 6.39859 6.73847 6.83030 6.97712 7.03233 7.57729 9.02692 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.039256 B = 0.006150 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.102573 B = 4551.946960 C = 4572.883289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.139 4.139 3 C 0.221 3.779 4 H 0.007 0.993 5 C -0.496 4.496 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.670 5.670 14 C 0.133 3.867 15 H 0.054 0.946 16 C -0.122 4.122 17 C 0.075 3.925 18 C 0.047 3.953 19 N -0.455 5.455 20 C 0.044 3.956 21 C 0.049 3.951 22 N -0.449 5.449 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.024 0.976 27 H 0.064 0.936 28 H 0.258 0.742 29 H 0.333 0.667 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.183 0.817 34 H 0.207 0.793 35 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 1.181 -15.098 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.179 4.179 3 C 0.112 3.888 4 H 0.025 0.975 5 C -0.535 4.535 6 H 0.066 0.934 7 C -0.182 4.182 8 N -0.560 5.560 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.303 5.303 14 C 0.021 3.979 15 H 0.072 0.928 16 C -0.181 4.181 17 C -0.065 4.065 18 C -0.113 4.113 19 N -0.170 5.170 20 C -0.116 4.116 21 C -0.111 4.111 22 N -0.164 5.164 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.153 0.847 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.200 0.800 34 H 0.223 0.777 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.523 1.685 -14.774 14.947 hybrid contribution -0.427 -0.572 0.974 1.207 sum -1.950 1.113 -13.800 13.981 Atomic orbital electron populations 1.21431 0.96391 0.99105 1.00540 1.21982 0.96151 1.00361 0.99388 1.19020 0.94128 0.89069 0.86534 0.97480 1.21247 1.30134 1.11211 0.90915 0.93395 1.25529 0.96025 0.95922 1.00770 1.69996 1.40202 1.25161 1.20675 0.85705 0.78319 0.79194 0.79280 1.20350 1.21176 1.19903 1.60698 1.04125 1.62878 1.02557 1.20386 0.93443 0.98067 0.86002 0.92821 1.21676 0.96170 0.98554 1.01667 1.22339 0.93183 0.93826 0.97168 1.23727 1.00654 0.98587 0.88290 1.68513 1.09025 1.15277 1.24135 1.24375 0.92601 0.92612 1.02041 1.24437 1.00362 0.98210 0.88122 1.68286 1.07952 1.13962 1.26211 0.93857 0.94125 0.93904 0.95688 0.91725 0.93246 0.84742 0.93270 0.90497 0.93253 0.79964 0.77679 0.78420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.39 71.98 0.68 -4.36 16 2 C -0.14 -6.52 5.48 30.59 0.17 -6.35 16 3 C 0.22 10.96 2.14 44.17 0.09 11.06 16 4 H 0.01 0.40 7.04 -2.39 -0.02 0.38 16 5 C -0.50 -27.25 7.35 25.60 0.19 -27.06 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 7 C 0.02 0.86 5.23 84.65 0.44 1.30 16 8 N -0.92 -52.31 11.38 21.45 0.24 -52.07 16 9 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.67 -28.74 5.78 -477.17 -2.76 -31.50 16 14 C 0.13 4.67 2.68 44.17 0.12 4.79 16 15 H 0.05 1.89 7.12 -2.39 -0.02 1.87 16 16 C -0.12 -4.06 9.37 71.98 0.67 -3.38 16 17 C 0.07 2.29 5.70 42.55 0.24 2.53 16 18 C 0.05 1.21 10.90 84.69 0.92 2.13 16 19 N -0.45 -11.09 10.50 -195.22 -2.05 -13.14 16 20 C 0.04 0.84 11.22 84.67 0.95 1.79 16 21 C 0.05 1.07 11.22 84.67 0.95 2.02 16 22 N -0.45 -13.81 9.48 -183.30 -1.74 -15.55 16 23 H 0.04 2.05 7.05 -2.39 -0.02 2.03 16 24 H 0.04 1.62 6.42 -2.38 -0.02 1.60 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.02 1.06 7.41 -2.39 -0.02 1.04 16 27 H 0.06 3.42 6.24 -2.38 -0.01 3.41 16 28 H 0.26 14.12 8.31 -92.71 -0.77 13.34 16 29 H 0.33 14.21 5.74 -89.69 -0.52 13.70 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.82 7.36 -2.39 -0.02 1.80 16 33 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.21 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.20 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -63.75 287.81 1.72 -62.03 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.57 Total: 19.53 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 5.43 Total: -15.54 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -6.30 Total: -112.26 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.75 1.72 -62.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070025813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.388 kcal (2) G-P(sol) polarization free energy of solvation -63.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds