Wall clock time and date at job start Sun Mar 29 2020 22:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34950 * 126.03621 * 2 1 4 4 C 1.35320 * 107.74378 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.03885 * 180.02562 * 4 3 2 6 6 H 1.08997 * 110.46072 * 17.58787 * 5 4 3 7 7 C 1.54379 * 110.41139 * 255.17491 * 5 4 3 8 8 C 1.54260 * 105.06377 * 217.37117 * 7 5 4 9 9 C 1.54378 * 105.05489 * 359.97438 * 8 7 5 10 10 N 1.48558 * 104.59923 * 23.85699 * 9 8 7 11 11 C 1.46895 * 111.00108 * 200.96031 * 10 9 8 12 12 C 1.50706 * 109.47182 * 285.41530 * 11 10 9 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 C 1.39871 * 107.91754 * 0.26289 * 4 3 2 21 21 N 1.30840 * 108.20674 * 359.55886 * 20 4 3 22 22 H 1.08997 * 109.46916 * 89.99565 * 1 2 3 23 23 H 1.08996 * 109.47186 * 210.00012 * 1 2 3 24 24 H 1.09006 * 109.46801 * 330.00333 * 1 2 3 25 25 H 1.07993 * 126.12673 * 0.04729 * 3 2 1 26 26 H 1.09005 * 110.32495 * 336.26278 * 7 5 4 27 27 H 1.09005 * 110.32729 * 98.36523 * 7 5 4 28 28 H 1.08991 * 110.32356 * 118.89386 * 8 7 5 29 29 H 1.08997 * 110.32160 * 241.00357 * 8 7 5 30 30 H 1.09001 * 110.41466 * 265.07487 * 9 8 7 31 31 H 1.09005 * 110.40748 * 142.63813 * 9 8 7 32 32 H 1.09001 * 109.47613 * 165.41876 * 11 10 9 33 33 H 1.09006 * 109.47521 * 45.41494 * 11 10 9 34 34 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 35 35 H 1.08004 * 125.89419 * 179.72953 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5438 0.6665 -0.0006 5 6 4.7680 1.5452 -0.0002 6 1 4.5100 2.5580 0.3091 7 6 5.4210 1.5594 -1.3991 8 6 6.9401 1.5853 -1.1322 9 6 7.0771 1.5853 0.4055 10 7 5.8110 0.9811 0.8943 11 6 5.5587 1.3477 2.2942 12 6 6.4815 0.5651 3.1926 13 1 7.1854 -0.1343 2.7662 14 6 6.4273 0.7421 4.5588 15 7 5.5699 1.5935 5.0781 16 14 7.5706 -0.2285 5.6724 17 1 6.9176 -1.5042 6.0616 18 1 8.8352 -0.5198 4.9505 19 1 7.8680 0.5670 6.8907 20 6 3.5346 -0.7321 -0.0070 21 7 2.2891 -1.1328 -0.0007 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 1.9282 2.1193 0.0007 26 1 5.1493 0.6607 -1.9529 27 1 5.1166 2.4493 -1.9501 28 1 7.4139 0.6994 -1.5548 29 1 7.3830 2.4880 -1.5529 30 1 7.1806 2.6045 0.7780 31 1 7.9303 0.9796 0.7111 32 1 4.5238 1.1193 2.5488 33 1 5.7390 2.4143 2.4286 34 1 4.9759 2.0972 4.4999 35 1 4.4054 -1.3710 -0.0132 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071797357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:28 Heat of formation + Delta-G solvation = 79.776525 kcal Electronic energy + Delta-G solvation = -16711.928009 eV Core-core repulsion = 14132.507739 eV Total energy + Delta-G solvation = -2579.420269 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85093 -38.07094 -33.40272 -32.96030 -30.75133 -30.65706 -27.89822 -25.86099 -25.58886 -22.58184 -21.27022 -20.70196 -20.08358 -19.18209 -16.74807 -16.53745 -15.18229 -15.01619 -14.76194 -13.97275 -13.65639 -13.61414 -13.01629 -12.86510 -12.60824 -12.34262 -12.32650 -12.01806 -11.19125 -11.06347 -10.96517 -10.61713 -10.58664 -10.36611 -10.20312 -10.04835 -9.96876 -9.03457 -8.62674 -8.29487 -7.94842 -7.41668 -6.30143 -3.97658 2.21587 2.82731 3.25643 3.48545 3.52085 3.67687 4.57211 4.67857 4.94114 5.14822 5.16373 5.25585 5.27434 5.39216 5.45414 5.51576 5.58103 5.77412 5.91430 6.03685 6.13066 6.21004 6.27265 6.48260 6.52844 6.62102 6.69327 7.06000 7.07255 7.11436 7.31143 7.79924 8.03944 8.09416 8.35518 8.66922 8.94505 9.72927 11.09175 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.007968 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.735884 B = 3513.123670 C = 4384.707891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.386 5.386 3 C 0.044 3.956 4 C -0.200 4.200 5 C 0.132 3.868 6 H 0.043 0.957 7 C -0.111 4.111 8 C -0.126 4.126 9 C 0.046 3.954 10 N -0.492 5.492 11 C 0.177 3.823 12 C -0.581 4.581 13 H 0.056 0.944 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 1.074 2.926 17 H -0.288 1.288 18 H -0.288 1.288 19 H -0.286 1.286 20 C 0.085 3.915 21 N -0.311 5.311 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.166 0.834 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.020 0.980 33 H -0.020 1.020 34 H 0.265 0.735 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 0.814 -12.808 14.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.169 5.169 3 C -0.102 4.102 4 C -0.212 4.212 5 C 0.022 3.978 6 H 0.061 0.939 7 C -0.150 4.150 8 C -0.164 4.164 9 C -0.082 4.082 10 N -0.216 5.216 11 C 0.051 3.949 12 C -0.620 4.620 13 H 0.075 0.925 14 C -0.191 4.191 15 N -0.555 5.555 16 Si 0.903 3.097 17 H -0.215 1.215 18 H -0.214 1.214 19 H -0.212 1.212 20 C -0.101 4.101 21 N -0.132 5.132 22 H 0.086 0.914 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.183 0.817 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.038 0.962 33 H -0.002 1.002 34 H 0.076 0.924 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.367 -1.022 -11.213 12.935 hybrid contribution -0.073 1.970 -1.373 2.402 sum -6.440 0.948 -12.586 14.170 Atomic orbital electron populations 1.21716 0.74985 1.04129 1.02609 1.48316 1.06161 1.03986 1.58448 1.22171 0.91083 0.93028 1.03916 1.19855 0.93179 0.94307 1.13865 1.20768 0.89999 0.93864 0.93178 0.93875 1.22293 0.95079 1.01275 0.96328 1.22342 0.95987 1.01097 0.96955 1.22896 0.95081 0.97706 0.92545 1.65277 0.99579 1.52879 1.03818 1.19926 0.97257 0.93705 0.84031 1.21971 1.21505 1.25683 0.92841 0.92544 1.25828 0.99051 0.97516 0.96714 1.70763 1.21024 1.24704 1.38976 0.83469 0.75236 0.75608 0.75409 1.21515 1.21441 1.21189 1.23716 0.94434 0.94817 0.97123 1.77315 1.01977 1.08049 1.25859 0.91376 0.89641 0.89958 0.81657 0.91394 0.92335 0.91577 0.92300 0.94816 0.90373 0.96234 1.00244 0.92439 0.79886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.09 11.47 59.85 0.69 1.78 16 2 N -0.39 -6.01 4.01 -68.16 -0.27 -6.29 16 3 C 0.04 0.69 11.40 -17.22 -0.20 0.49 16 4 C -0.20 -3.61 4.61 -105.05 -0.48 -4.10 16 5 C 0.13 2.42 2.69 -67.24 -0.18 2.23 16 6 H 0.04 0.81 7.99 -51.93 -0.42 0.39 16 7 C -0.11 -1.67 6.54 -25.35 -0.17 -1.84 16 8 C -0.13 -1.89 7.00 -25.35 -0.18 -2.07 16 9 C 0.05 0.89 6.12 -2.18 -0.01 0.88 16 10 N -0.49 -10.75 4.79 -224.95 -1.08 -11.83 16 11 C 0.18 4.69 3.85 -4.98 -0.02 4.68 16 12 C -0.58 -16.90 8.97 -34.44 -0.31 -17.21 16 13 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 14 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 15 N -0.92 -28.64 13.65 55.43 0.76 -27.89 16 16 Si 1.07 26.06 29.90 -169.99 -5.08 20.98 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 C 0.09 1.61 11.71 -17.36 -0.20 1.40 16 21 N -0.31 -5.74 12.58 30.63 0.39 -5.35 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 26 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.68 7.75 -51.93 -0.40 0.27 16 31 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.02 0.56 7.65 -51.93 -0.40 0.17 16 33 H -0.02 -0.56 7.63 -51.93 -0.40 -0.96 16 34 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 35 H 0.18 3.36 8.06 -52.48 -0.42 2.93 16 LS Contribution 293.10 15.07 4.42 4.42 Total: -1.00 -33.82 293.10 -7.36 -41.18 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.32 Total: -1.72 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.16 Total: -13.50 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.21 Total: -51.36 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.98 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.82 -7.36 -41.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071797357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.954 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds