Wall clock time and date at job start Sun Mar 29 2020 22:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34950 * 126.03621 * 2 1 4 4 C 1.35320 * 107.74378 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.03885 * 180.02562 * 4 3 2 6 6 H 1.08997 * 110.46072 * 17.58787 * 5 4 3 7 7 C 1.54379 * 110.41139 * 255.17491 * 5 4 3 8 8 C 1.54260 * 105.06377 * 217.37117 * 7 5 4 9 9 C 1.54378 * 105.05489 * 359.97438 * 8 7 5 10 10 N 1.48558 * 104.59923 * 23.85699 * 9 8 7 11 11 C 1.46895 * 111.00108 * 200.96031 * 10 9 8 12 12 C 1.50706 * 109.47182 * 285.41530 * 11 10 9 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 C 1.39871 * 107.91754 * 0.26289 * 4 3 2 21 21 N 1.30840 * 108.20674 * 359.55886 * 20 4 3 22 22 H 1.08997 * 109.46916 * 89.99565 * 1 2 3 23 23 H 1.08996 * 109.47186 * 210.00012 * 1 2 3 24 24 H 1.09006 * 109.46801 * 330.00333 * 1 2 3 25 25 H 1.07993 * 126.12673 * 0.04729 * 3 2 1 26 26 H 1.09005 * 110.32495 * 336.26278 * 7 5 4 27 27 H 1.09005 * 110.32729 * 98.36523 * 7 5 4 28 28 H 1.08991 * 110.32356 * 118.89386 * 8 7 5 29 29 H 1.08997 * 110.32160 * 241.00357 * 8 7 5 30 30 H 1.09001 * 110.41466 * 265.07487 * 9 8 7 31 31 H 1.09005 * 110.40748 * 142.63813 * 9 8 7 32 32 H 1.09001 * 109.47613 * 165.41876 * 11 10 9 33 33 H 1.09006 * 109.47521 * 45.41494 * 11 10 9 34 34 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 35 35 H 1.08004 * 125.89419 * 179.72953 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5438 0.6665 -0.0006 5 6 4.7680 1.5452 -0.0002 6 1 4.5100 2.5580 0.3091 7 6 5.4210 1.5594 -1.3991 8 6 6.9401 1.5853 -1.1322 9 6 7.0771 1.5853 0.4055 10 7 5.8110 0.9811 0.8943 11 6 5.5587 1.3477 2.2942 12 6 6.4815 0.5651 3.1926 13 1 7.1854 -0.1343 2.7662 14 6 6.4273 0.7421 4.5588 15 7 5.5699 1.5935 5.0781 16 14 7.5706 -0.2285 5.6724 17 1 6.9176 -1.5042 6.0616 18 1 8.8352 -0.5198 4.9505 19 1 7.8680 0.5670 6.8907 20 6 3.5346 -0.7321 -0.0070 21 7 2.2891 -1.1328 -0.0007 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 1.9282 2.1193 0.0007 26 1 5.1493 0.6607 -1.9529 27 1 5.1166 2.4493 -1.9501 28 1 7.4139 0.6994 -1.5548 29 1 7.3830 2.4880 -1.5529 30 1 7.1806 2.6045 0.7780 31 1 7.9303 0.9796 0.7111 32 1 4.5238 1.1193 2.5488 33 1 5.7390 2.4143 2.4286 34 1 4.9759 2.0972 4.4999 35 1 4.4054 -1.3710 -0.0132 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071797357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:28 Heat of formation + Delta-G solvation = 56.441125 kcal Electronic energy + Delta-G solvation = -16712.939908 eV Core-core repulsion = 14132.507739 eV Total energy + Delta-G solvation = -2580.432168 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.14587 -39.60531 -35.51144 -34.14429 -32.50796 -32.01438 -29.12483 -27.80789 -26.87998 -24.60328 -22.75435 -21.94762 -21.54832 -20.57409 -18.89478 -17.83881 -16.57909 -16.28549 -16.22641 -15.62888 -15.32590 -15.13312 -14.72494 -14.37088 -13.88547 -13.63839 -13.59752 -13.40264 -13.03415 -12.76749 -12.49903 -12.31645 -12.13106 -11.93841 -11.90837 -11.67493 -11.26264 -10.78615 -10.56291 -10.30627 -9.24792 -9.20786 -8.67487 -6.37018 0.95182 1.51451 1.61027 1.73470 1.79082 1.86691 2.55509 3.14761 3.30197 3.73743 3.89506 3.96808 4.01616 4.23023 4.34995 4.36720 4.44131 4.57405 4.66185 4.73900 4.76681 4.82013 4.92261 4.95643 5.05930 5.09418 5.21632 5.30215 5.40539 5.70636 5.82868 6.03193 6.17106 6.32253 6.43881 6.64785 6.77636 7.43392 8.71025 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.007968 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.735884 B = 3513.123670 C = 4384.707891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.382 5.382 3 C 0.054 3.946 4 C -0.230 4.230 5 C 0.131 3.869 6 H 0.037 0.963 7 C -0.101 4.101 8 C -0.113 4.113 9 C 0.040 3.960 10 N -0.504 5.504 11 C 0.197 3.803 12 C -0.593 4.593 13 H 0.051 0.949 14 C -0.040 4.040 15 N -0.939 5.939 16 Si 1.122 2.878 17 H -0.276 1.276 18 H -0.268 1.268 19 H -0.281 1.281 20 C 0.066 3.934 21 N -0.337 5.337 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.202 0.798 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.021 0.979 31 H 0.064 0.936 32 H -0.010 1.010 33 H -0.044 1.044 34 H 0.251 0.749 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.125 1.022 -14.114 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.164 5.164 3 C -0.093 4.093 4 C -0.242 4.242 5 C 0.021 3.979 6 H 0.055 0.945 7 C -0.139 4.139 8 C -0.150 4.150 9 C -0.088 4.088 10 N -0.227 5.227 11 C 0.069 3.931 12 C -0.632 4.632 13 H 0.070 0.930 14 C -0.237 4.237 15 N -0.577 5.577 16 Si 0.943 3.057 17 H -0.202 1.202 18 H -0.192 1.192 19 H -0.206 1.206 20 C -0.119 4.119 21 N -0.160 5.160 22 H 0.112 0.888 23 H 0.105 0.895 24 H 0.128 0.872 25 H 0.219 0.781 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.008 0.992 33 H -0.026 1.026 34 H 0.061 0.939 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.670 -0.824 -12.560 14.245 hybrid contribution -0.100 1.932 -1.008 2.181 sum -6.770 1.108 -13.568 15.204 Atomic orbital electron populations 1.22172 0.71906 1.05601 1.04765 1.48755 1.07878 1.03152 1.56643 1.22685 0.90373 0.94517 1.01746 1.19971 0.94181 0.94013 1.16026 1.20852 0.89574 0.93277 0.94153 0.94494 1.22269 0.94437 1.02906 0.94317 1.22297 0.96471 1.03159 0.93123 1.22955 0.93479 0.96362 0.95991 1.65178 1.01941 1.53746 1.01885 1.19513 0.94824 0.91729 0.87002 1.22301 1.21629 1.25578 0.93657 0.93034 1.27408 0.99726 0.97643 0.98875 1.70900 1.22079 1.26005 1.38754 0.82872 0.74210 0.74656 0.73925 1.20213 1.19241 1.20640 1.23678 0.94601 0.95363 0.98281 1.77224 1.02193 1.09771 1.26812 0.88831 0.89531 0.87202 0.78114 0.90962 0.89458 0.90361 0.89461 0.96065 0.91794 0.99240 1.02641 0.93946 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 11.47 127.77 1.47 3.15 16 2 N -0.38 -11.28 4.01 -369.55 -1.48 -12.76 16 3 C 0.05 1.61 11.40 83.54 0.95 2.56 16 4 C -0.23 -8.23 4.61 -20.14 -0.09 -8.32 16 5 C 0.13 4.75 2.69 44.32 0.12 4.86 16 6 H 0.04 1.37 7.99 -2.39 -0.02 1.35 16 7 C -0.10 -2.80 6.54 31.49 0.21 -2.59 16 8 C -0.11 -3.13 7.00 31.49 0.22 -2.91 16 9 C 0.04 1.57 6.12 86.45 0.53 2.09 16 10 N -0.50 -22.47 4.79 -865.62 -4.15 -26.62 16 11 C 0.20 10.85 3.85 85.56 0.33 11.18 16 12 C -0.59 -35.39 8.97 25.60 0.23 -35.16 16 13 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 14 C -0.04 -2.38 5.46 84.65 0.46 -1.92 16 15 N -0.94 -59.98 13.65 21.45 0.29 -59.69 16 16 Si 1.12 52.39 29.90 68.60 2.05 54.44 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 C 0.07 2.52 11.71 85.24 1.00 3.52 16 21 N -0.34 -12.43 12.58 -57.02 -0.72 -13.14 16 22 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.20 4.32 8.06 -2.91 -0.02 4.30 16 26 H 0.07 1.97 7.85 -2.38 -0.02 1.95 16 27 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.02 0.86 7.75 -2.39 -0.02 0.84 16 31 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 32 H -0.01 -0.63 7.65 -2.39 -0.02 -0.65 16 33 H -0.04 -2.58 7.63 -2.38 -0.02 -2.59 16 34 H 0.25 16.33 7.22 -92.71 -0.67 15.66 16 35 H 0.17 6.67 8.06 -2.91 -0.02 6.65 16 Total: -1.00 -75.32 293.10 2.57 -72.75 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.15 Total: 8.56 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 5.42 Total: -23.54 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -6.06 Total: -112.21 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Total: -75.32 2.57 -72.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071797357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.189 kcal (2) G-P(sol) polarization free energy of solvation -75.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds