Wall clock time and date at job start Sun Mar 29 2020 22:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.03479 * 2 1 4 4 C 1.35314 * 107.74691 * 180.14078 * 3 2 1 5 5 C 1.50696 * 126.04510 * 179.87159 * 4 3 2 6 6 C 1.53006 * 109.47211 * 269.71442 * 5 4 3 7 7 N 1.46502 * 109.47247 * 179.97438 * 6 5 4 8 8 C 1.36933 * 120.00339 * 270.00603 * 7 6 5 9 9 H 1.07995 * 120.00560 * 140.53619 * 8 7 6 10 10 C 1.38814 * 119.99406 * 320.53203 * 8 7 6 11 11 N 1.31612 * 120.00673 * 340.28245 * 10 8 7 12 12 Si 1.86808 * 119.99645 * 160.28451 * 10 8 7 13 13 H 1.48502 * 109.47107 * 89.99984 * 12 10 8 14 14 H 1.48501 * 109.47081 * 210.00085 * 12 10 8 15 15 H 1.48496 * 109.47165 * 330.00187 * 12 10 8 16 16 C 1.46499 * 119.99505 * 90.00162 * 7 6 5 17 17 C 1.53000 * 117.49756 * 183.28633 * 16 7 6 18 18 C 1.52994 * 60.00104 * 252.51432 * 17 16 7 19 19 C 1.39873 * 107.92123 * 359.60886 * 4 3 2 20 20 N 1.30846 * 108.19706 * 0.24141 * 19 4 3 21 21 H 1.08998 * 109.47586 * 270.31087 * 1 2 3 22 22 H 1.08995 * 109.46936 * 30.31746 * 1 2 3 23 23 H 1.09006 * 109.46477 * 150.31436 * 1 2 3 24 24 H 1.08003 * 126.12926 * 359.97438 * 3 2 1 25 25 H 1.09002 * 109.47712 * 149.71587 * 5 4 3 26 26 H 1.08999 * 109.47152 * 29.71125 * 5 4 3 27 27 H 1.09002 * 109.46664 * 59.99503 * 6 5 4 28 28 H 1.08998 * 109.47308 * 300.00024 * 6 5 4 29 29 H 0.97000 * 120.00354 * 175.01784 * 11 10 8 30 30 H 1.09001 * 115.55457 * 328.99834 * 16 7 6 31 31 H 1.09004 * 117.49643 * 0.02562 * 17 16 7 32 32 H 1.08997 * 117.49838 * 145.01935 * 17 16 7 33 33 H 1.09006 * 117.49900 * 252.51071 * 18 17 16 34 34 H 1.08996 * 117.52328 * 107.48177 * 18 17 16 35 35 H 1.07999 * 125.90447 * 180.22094 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0032 5 6 4.7679 1.5453 -0.0071 6 6 5.1826 1.8359 -1.4509 7 7 6.3724 2.6906 -1.4547 8 6 6.2367 4.0532 -1.4612 9 1 6.9015 4.6650 -0.8696 10 6 5.2446 4.6481 -2.2285 11 7 4.6976 3.9857 -3.2256 12 14 4.6858 6.3890 -1.8458 13 1 5.5124 7.3544 -2.6140 14 1 3.2591 6.5460 -2.2268 15 1 4.8416 6.6507 -0.3924 16 6 7.7075 2.0874 -1.4514 17 6 8.9091 3.0317 -1.3778 18 6 8.5848 2.3069 -2.6856 19 6 3.5347 -0.7320 0.0039 20 7 2.2891 -1.1327 0.0058 21 1 -0.3634 0.0056 1.0276 22 1 -0.3633 0.8871 -0.5187 23 1 -0.3632 -0.8929 -0.5090 24 1 1.9281 2.1194 -0.0004 25 1 5.5820 1.0366 0.5093 26 1 4.5440 2.4827 0.5022 27 1 4.3685 2.3446 -1.9673 28 1 5.4065 0.8986 -1.9603 29 1 3.9554 4.3726 -3.7158 30 1 7.7888 1.1282 -0.9402 31 1 8.7062 4.1017 -1.3315 32 1 9.7811 2.6939 -0.8180 33 1 9.2435 1.4920 -2.9861 34 1 8.1685 2.8995 -3.5001 35 1 4.4055 -1.3709 0.0069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077272020.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:23 Heat of formation + Delta-G solvation = 123.133518 kcal Electronic energy + Delta-G solvation = -16457.399005 eV Core-core repulsion = 13879.858836 eV Total energy + Delta-G solvation = -2577.540169 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75805 -36.96148 -34.12747 -32.99807 -31.67669 -29.98386 -27.90825 -25.88511 -24.18977 -21.88497 -21.22781 -20.69376 -19.77640 -19.38580 -16.40245 -16.17808 -15.33805 -15.08833 -14.58431 -14.11828 -13.86874 -13.29527 -12.90645 -12.69218 -12.49421 -12.23290 -11.89526 -11.65456 -11.32542 -10.92402 -10.71035 -10.62977 -10.25748 -10.14330 -10.02478 -9.54633 -9.41662 -9.18590 -9.04828 -8.42067 -7.88057 -6.44423 -5.71717 -3.39121 2.25168 2.84158 3.25892 3.34283 3.42109 3.45313 4.47256 4.75161 5.02604 5.19269 5.26907 5.33648 5.38847 5.41836 5.45834 5.96821 5.99687 6.02118 6.19346 6.31303 6.40467 6.56707 6.62017 6.67316 6.79548 6.86908 7.03085 7.14797 7.30510 7.33328 7.39630 7.78011 7.85685 8.05531 8.55653 9.22040 9.83516 10.42775 11.21235 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.007941 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.204740 B = 3524.986833 C = 4540.453455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.386 5.386 3 C 0.048 3.952 4 C -0.209 4.209 5 C -0.061 4.061 6 C 0.159 3.841 7 N -0.553 5.553 8 C -0.256 4.256 9 H 0.062 0.938 10 C 0.014 3.986 11 N -0.882 5.882 12 Si 0.892 3.108 13 H -0.286 1.286 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.122 3.878 17 C -0.197 4.197 18 C -0.223 4.223 19 C 0.048 3.952 20 N -0.311 5.311 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.170 0.830 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.024 0.976 29 H 0.253 0.747 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.677 -5.724 5.800 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.169 5.169 3 C -0.097 4.097 4 C -0.220 4.220 5 C -0.102 4.102 6 C 0.033 3.967 7 N -0.270 5.270 8 C -0.386 4.386 9 H 0.080 0.920 10 C -0.187 4.187 11 N -0.524 5.524 12 Si 0.721 3.279 13 H -0.213 1.213 14 H -0.216 1.216 15 H -0.202 1.202 16 C 0.012 3.988 17 C -0.235 4.235 18 C -0.264 4.264 19 C -0.138 4.138 20 N -0.133 5.133 21 H 0.086 0.914 22 H 0.102 0.898 23 H 0.102 0.898 24 H 0.187 0.813 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.762 -6.643 5.636 10.445 hybrid contribution 0.174 1.697 0.003 1.706 sum -5.588 -4.946 5.640 9.354 Atomic orbital electron populations 1.21727 0.75038 1.04090 1.02677 1.48329 1.06140 1.04025 1.58445 1.22343 0.91066 0.93015 1.03232 1.20386 0.95182 0.93821 1.12653 1.20620 0.91516 0.96486 1.01557 1.20872 0.91469 0.92687 0.91700 1.43429 0.97908 1.02374 1.83260 1.19005 1.17073 0.82108 1.20417 0.92043 1.25225 1.01828 0.97365 0.94237 1.70079 1.24998 1.38914 1.18398 0.86495 0.77830 0.85259 0.78332 1.21261 1.21569 1.20238 1.21243 0.84491 0.95225 0.97802 1.23002 0.99130 0.99947 1.01405 1.23339 1.06199 1.03127 0.93703 1.23765 0.94815 0.95010 1.00209 1.77205 1.01889 1.08556 1.25610 0.91385 0.89768 0.89795 0.81277 0.92995 0.91781 0.89054 0.95720 0.93711 0.89617 0.88588 0.90928 0.91407 0.89107 0.80479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.09 11.47 59.85 0.69 1.78 16 2 N -0.39 -5.95 4.01 -68.16 -0.27 -6.22 16 3 C 0.05 0.79 11.40 -17.22 -0.20 0.60 16 4 C -0.21 -3.73 5.35 -105.05 -0.56 -4.29 16 5 C -0.06 -1.19 6.02 -27.88 -0.17 -1.35 16 6 C 0.16 3.65 5.32 -4.04 -0.02 3.63 16 7 N -0.55 -13.55 2.75 -165.66 -0.46 -14.00 16 8 C -0.26 -6.80 8.47 -15.06 -0.13 -6.92 16 9 H 0.06 1.64 6.74 -52.49 -0.35 1.29 16 10 C 0.01 0.38 4.98 -17.43 -0.09 0.29 16 11 N -0.88 -24.91 11.50 55.49 0.64 -24.28 16 12 Si 0.89 21.00 29.60 -169.99 -5.03 15.97 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 16 C 0.12 2.63 6.56 -67.93 -0.45 2.18 16 17 C -0.20 -3.94 9.80 -26.73 -0.26 -4.21 16 18 C -0.22 -4.66 10.36 -26.73 -0.28 -4.94 16 19 C 0.05 0.80 11.96 -17.36 -0.21 0.60 16 20 N -0.31 -5.34 12.58 30.63 0.39 -4.95 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.17 2.48 8.06 -52.48 -0.42 2.06 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.09 2.39 5.59 -51.93 -0.29 2.10 16 28 H 0.02 0.56 8.07 -51.93 -0.42 0.14 16 29 H 0.25 6.91 8.32 -40.82 -0.34 6.57 16 30 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 31 H 0.10 2.09 6.46 -51.93 -0.34 1.76 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 35 H 0.18 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -30.50 298.03 -7.10 -37.60 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.18 Total: 4.02 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.67 Total: -12.63 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.29 Total: -49.45 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.50 -7.10 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077272020.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.737 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds