Wall clock time and date at job start Sun Mar 29 2020 22:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.03479 * 2 1 4 4 C 1.35314 * 107.74691 * 180.14078 * 3 2 1 5 5 C 1.50696 * 126.04510 * 179.87159 * 4 3 2 6 6 C 1.53006 * 109.47211 * 269.71442 * 5 4 3 7 7 N 1.46502 * 109.47247 * 179.97438 * 6 5 4 8 8 C 1.36933 * 120.00339 * 270.00603 * 7 6 5 9 9 H 1.07995 * 120.00560 * 140.53619 * 8 7 6 10 10 C 1.38814 * 119.99406 * 320.53203 * 8 7 6 11 11 N 1.31612 * 120.00673 * 340.28245 * 10 8 7 12 12 Si 1.86808 * 119.99645 * 160.28451 * 10 8 7 13 13 H 1.48502 * 109.47107 * 89.99984 * 12 10 8 14 14 H 1.48501 * 109.47081 * 210.00085 * 12 10 8 15 15 H 1.48496 * 109.47165 * 330.00187 * 12 10 8 16 16 C 1.46499 * 119.99505 * 90.00162 * 7 6 5 17 17 C 1.53000 * 117.49756 * 183.28633 * 16 7 6 18 18 C 1.52994 * 60.00104 * 252.51432 * 17 16 7 19 19 C 1.39873 * 107.92123 * 359.60886 * 4 3 2 20 20 N 1.30846 * 108.19706 * 0.24141 * 19 4 3 21 21 H 1.08998 * 109.47586 * 270.31087 * 1 2 3 22 22 H 1.08995 * 109.46936 * 30.31746 * 1 2 3 23 23 H 1.09006 * 109.46477 * 150.31436 * 1 2 3 24 24 H 1.08003 * 126.12926 * 359.97438 * 3 2 1 25 25 H 1.09002 * 109.47712 * 149.71587 * 5 4 3 26 26 H 1.08999 * 109.47152 * 29.71125 * 5 4 3 27 27 H 1.09002 * 109.46664 * 59.99503 * 6 5 4 28 28 H 1.08998 * 109.47308 * 300.00024 * 6 5 4 29 29 H 0.97000 * 120.00354 * 175.01784 * 11 10 8 30 30 H 1.09001 * 115.55457 * 328.99834 * 16 7 6 31 31 H 1.09004 * 117.49643 * 0.02562 * 17 16 7 32 32 H 1.08997 * 117.49838 * 145.01935 * 17 16 7 33 33 H 1.09006 * 117.49900 * 252.51071 * 18 17 16 34 34 H 1.08996 * 117.52328 * 107.48177 * 18 17 16 35 35 H 1.07999 * 125.90447 * 180.22094 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0032 5 6 4.7679 1.5453 -0.0071 6 6 5.1826 1.8359 -1.4509 7 7 6.3724 2.6906 -1.4547 8 6 6.2367 4.0532 -1.4612 9 1 6.9015 4.6650 -0.8696 10 6 5.2446 4.6481 -2.2285 11 7 4.6976 3.9857 -3.2256 12 14 4.6858 6.3890 -1.8458 13 1 5.5124 7.3544 -2.6140 14 1 3.2591 6.5460 -2.2268 15 1 4.8416 6.6507 -0.3924 16 6 7.7075 2.0874 -1.4514 17 6 8.9091 3.0317 -1.3778 18 6 8.5848 2.3069 -2.6856 19 6 3.5347 -0.7320 0.0039 20 7 2.2891 -1.1327 0.0058 21 1 -0.3634 0.0056 1.0276 22 1 -0.3633 0.8871 -0.5187 23 1 -0.3632 -0.8929 -0.5090 24 1 1.9281 2.1194 -0.0004 25 1 5.5820 1.0366 0.5093 26 1 4.5440 2.4827 0.5022 27 1 4.3685 2.3446 -1.9673 28 1 5.4065 0.8986 -1.9603 29 1 3.9554 4.3726 -3.7158 30 1 7.7888 1.1282 -0.9402 31 1 8.7062 4.1017 -1.3315 32 1 9.7811 2.6939 -0.8180 33 1 9.2435 1.4920 -2.9861 34 1 8.1685 2.8995 -3.5001 35 1 4.4055 -1.3709 0.0069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077272020.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:22 Heat of formation + Delta-G solvation = 105.938627 kcal Electronic energy + Delta-G solvation = -16458.144632 eV Core-core repulsion = 13879.858836 eV Total energy + Delta-G solvation = -2578.285795 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.01339 -38.72439 -35.74966 -34.45641 -33.26590 -31.65392 -29.29731 -27.29363 -25.95161 -23.53572 -22.86757 -21.91146 -21.48746 -20.84988 -18.15125 -17.58278 -17.13488 -16.42220 -16.20727 -15.71749 -15.25155 -14.76928 -14.45355 -14.03955 -13.82889 -13.60340 -13.41396 -13.16952 -12.95108 -12.68487 -12.53533 -12.36544 -12.02420 -11.83439 -11.62350 -11.30276 -11.14567 -10.84730 -10.42795 -10.27172 -9.21508 -8.40785 -7.70473 -5.43831 0.99673 1.45756 1.49003 1.58427 1.76578 1.93166 2.53375 3.21428 3.47316 3.59637 3.78060 4.07380 4.36539 4.38742 4.45337 4.50132 4.54698 4.62860 4.68112 4.73700 4.93203 4.98112 5.01295 5.07510 5.16276 5.28914 5.43171 5.58158 5.61006 5.73690 5.83817 5.95037 6.20822 6.53265 6.79232 7.23032 7.92084 8.44980 9.17066 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.007941 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.204740 B = 3524.986833 C = 4540.453455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.383 5.383 3 C 0.048 3.952 4 C -0.236 4.236 5 C -0.038 4.038 6 C 0.165 3.835 7 N -0.570 5.570 8 C -0.258 4.258 9 H 0.057 0.943 10 C -0.033 4.033 11 N -0.914 5.914 12 Si 0.951 3.049 13 H -0.289 1.289 14 H -0.289 1.289 15 H -0.269 1.269 16 C 0.101 3.899 17 C -0.180 4.180 18 C -0.222 4.222 19 C 0.044 3.956 20 N -0.330 5.330 21 H 0.089 0.911 22 H 0.104 0.896 23 H 0.092 0.908 24 H 0.184 0.816 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.019 0.981 29 H 0.249 0.751 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 -6.176 6.963 10.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.166 5.166 3 C -0.098 4.098 4 C -0.248 4.248 5 C -0.079 4.079 6 C 0.040 3.960 7 N -0.288 5.288 8 C -0.389 4.389 9 H 0.074 0.926 10 C -0.231 4.231 11 N -0.558 5.558 12 Si 0.779 3.221 13 H -0.216 1.216 14 H -0.215 1.215 15 H -0.194 1.194 16 C -0.007 4.007 17 C -0.218 4.218 18 C -0.263 4.263 19 C -0.141 4.141 20 N -0.153 5.153 21 H 0.107 0.893 22 H 0.122 0.878 23 H 0.111 0.889 24 H 0.201 0.799 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.131 0.869 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.806 -7.113 6.816 11.435 hybrid contribution 0.180 1.798 -0.370 1.844 sum -5.626 -5.315 6.446 10.073 Atomic orbital electron populations 1.22142 0.72210 1.05591 1.04549 1.48726 1.07765 1.03165 1.56972 1.22606 0.91120 0.93974 1.02087 1.20328 0.95121 0.94301 1.15059 1.20234 0.92724 0.96227 0.98731 1.20729 0.90154 0.91566 0.93593 1.43639 0.99436 1.02036 1.83658 1.19168 1.16760 0.83312 1.19622 0.92572 1.25866 1.02333 1.00585 0.94274 1.70208 1.25540 1.40487 1.19560 0.85568 0.77104 0.81169 0.78302 1.21618 1.21509 1.19369 1.21582 0.83621 0.96819 0.98713 1.23003 0.99564 0.98441 1.00777 1.23243 1.06594 1.03749 0.92669 1.24076 0.95505 0.94786 0.99712 1.77158 1.02237 1.09585 1.26282 0.89295 0.87757 0.88888 0.79926 0.91931 0.93327 0.92321 0.96248 0.94170 0.86934 0.90829 0.87091 0.88224 0.93073 0.78497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.72 11.47 127.77 1.47 3.19 16 2 N -0.38 -11.20 4.01 -369.57 -1.48 -12.68 16 3 C 0.05 1.55 11.40 83.54 0.95 2.50 16 4 C -0.24 -8.28 5.35 -20.14 -0.11 -8.39 16 5 C -0.04 -1.48 6.02 29.85 0.18 -1.30 16 6 C 0.17 7.69 5.32 86.38 0.46 8.15 16 7 N -0.57 -28.03 2.75 -678.03 -1.86 -29.90 16 8 C -0.26 -13.83 8.47 84.03 0.71 -13.12 16 9 H 0.06 3.02 6.74 -2.91 -0.02 3.00 16 10 C -0.03 -1.80 4.98 84.86 0.42 -1.38 16 11 N -0.91 -52.92 11.50 21.65 0.25 -52.67 16 12 Si 0.95 43.67 29.60 68.60 2.03 45.70 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 16 C 0.10 4.24 6.56 44.99 0.30 4.54 16 17 C -0.18 -6.89 9.80 30.59 0.30 -6.59 16 18 C -0.22 -9.05 10.36 30.59 0.32 -8.74 16 19 C 0.04 1.44 11.96 85.24 1.02 2.46 16 20 N -0.33 -10.90 12.58 -57.02 -0.72 -11.62 16 21 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.18 5.18 8.06 -2.91 -0.02 5.15 16 25 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 3.15 5.59 -2.39 -0.01 3.14 16 28 H 0.02 0.89 8.07 -2.39 -0.02 0.87 16 29 H 0.25 13.96 8.32 -92.71 -0.77 13.19 16 30 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 31 H 0.07 3.16 6.46 -2.39 -0.02 3.15 16 32 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 34 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.20 5.26 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -65.88 298.03 5.29 -60.59 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 1.06 Total: 19.26 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 6.02 Total: -18.68 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -3.81 Total: -106.87 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -65.88 5.29 -60.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077272020.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.531 kcal (2) G-P(sol) polarization free energy of solvation -65.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds