Wall clock time and date at job start Sun Mar 29 2020 22:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34947 * 126.03709 * 2 1 4 4 C 1.35324 * 107.74300 * 180.15137 * 3 2 1 5 5 C 1.50695 * 126.03882 * 179.87953 * 4 3 2 6 6 N 1.46904 * 109.46951 * 269.70924 * 5 4 3 7 7 C 1.46900 * 111.00269 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46884 * 174.87541 * 7 6 5 9 9 C 1.50705 * 115.55206 * 296.30337 * 8 7 6 10 10 H 1.08003 * 119.99437 * 95.20908 * 9 8 7 11 11 C 1.37877 * 120.00329 * 274.93418 * 9 8 7 12 12 N 1.31515 * 119.99732 * 355.41631 * 11 9 8 13 13 Si 1.86797 * 119.99830 * 175.41408 * 11 9 8 14 14 H 1.48503 * 109.46755 * 90.00110 * 13 11 9 15 15 H 1.48502 * 109.46887 * 209.99551 * 13 11 9 16 16 H 1.48498 * 109.47472 * 329.99881 * 13 11 9 17 17 C 1.53001 * 117.50130 * 81.98067 * 8 7 6 18 18 C 1.53000 * 117.49451 * 150.64227 * 8 7 6 19 19 C 1.39868 * 107.92038 * 359.60912 * 4 3 2 20 20 N 1.30842 * 108.20072 * 0.24186 * 19 4 3 21 21 H 1.09000 * 109.46783 * 270.30935 * 1 2 3 22 22 H 1.09006 * 109.46855 * 30.30423 * 1 2 3 23 23 H 1.08996 * 109.47120 * 150.30698 * 1 2 3 24 24 H 1.07992 * 126.13195 * 0.02562 * 3 2 1 25 25 H 1.09003 * 109.47471 * 149.71227 * 5 4 3 26 26 H 1.08996 * 109.47373 * 29.70379 * 5 4 3 27 27 H 1.00904 * 111.00100 * 56.04793 * 6 5 4 28 28 H 1.09002 * 109.46699 * 54.87769 * 7 6 5 29 29 H 1.08993 * 109.47270 * 294.87686 * 7 6 5 30 30 H 0.96996 * 119.99571 * 180.02562 * 12 11 9 31 31 H 1.08998 * 117.50117 * 214.99752 * 17 8 7 32 32 H 1.09002 * 117.49567 * 0.02562 * 17 8 7 33 33 H 1.08997 * 117.50075 * 359.97337 * 18 8 7 34 34 H 1.09002 * 117.49945 * 144.97567 * 18 8 7 35 35 H 1.07999 * 125.90009 * 180.22370 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6665 -0.0034 5 6 4.7680 1.5451 -0.0072 6 7 5.1661 1.8243 -1.3935 7 6 6.3587 2.6809 -1.4365 8 6 6.8170 2.8444 -2.8870 9 6 7.2673 1.5803 -3.5729 10 1 6.5734 1.0198 -4.1818 11 6 8.5666 1.1424 -3.4277 12 7 9.4368 1.8734 -2.7658 13 14 9.0909 -0.4892 -4.1709 14 1 9.5829 -0.2675 -5.5545 15 1 10.1763 -1.0817 -3.3487 16 1 7.9305 -1.4153 -4.2006 17 6 6.1022 3.8946 -3.7397 18 6 7.5340 4.1438 -3.2590 19 6 3.5347 -0.7322 0.0035 20 7 2.2891 -1.1328 0.0056 21 1 -0.3633 0.0055 1.0277 22 1 -0.3633 0.8873 -0.5186 23 1 -0.3633 -0.8927 -0.5090 24 1 1.9282 2.1193 0.0004 25 1 5.5821 1.0363 0.5090 26 1 4.5442 2.4824 0.5022 27 1 4.4055 2.2378 -1.9118 28 1 7.1568 2.2220 -0.8528 29 1 6.1191 3.6586 -1.0187 30 1 10.3509 1.5655 -2.6640 31 1 5.9576 3.6712 -4.7967 32 1 5.3057 4.4693 -3.2671 33 1 7.6788 4.8822 -2.4705 34 1 8.3316 4.0843 -3.9996 35 1 4.4054 -1.3711 0.0064 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:44 Heat of formation + Delta-G solvation = 106.740352 kcal Electronic energy + Delta-G solvation = -16142.264021 eV Core-core repulsion = 13564.012991 eV Total energy + Delta-G solvation = -2578.251030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97870 -36.96397 -34.64146 -32.89647 -31.73654 -30.18072 -27.47047 -25.70276 -24.77742 -22.73486 -20.93422 -20.91045 -19.98038 -18.89397 -16.83695 -15.91768 -15.38731 -14.80482 -14.38458 -14.15187 -13.89990 -13.71993 -13.27379 -12.96163 -12.57414 -12.55321 -12.34189 -11.54961 -11.23563 -11.06668 -10.82011 -10.60443 -10.45666 -10.32578 -10.06604 -9.29534 -9.25457 -8.83852 -8.29550 -8.24526 -7.91965 -7.40000 -5.86467 -3.88038 2.02090 2.63564 3.02368 3.40346 3.47094 3.53687 4.55223 4.56080 4.92062 5.02035 5.12114 5.24438 5.31259 5.42961 5.50676 5.58046 5.73278 6.03569 6.15737 6.23231 6.41136 6.43099 6.57308 6.71441 6.81928 6.84800 6.97538 7.12959 7.22467 7.59109 7.65624 7.86351 8.04821 8.08253 8.27571 8.65296 9.10804 9.74717 11.22818 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026155 B = 0.006148 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.284762 B = 4552.996458 C = 5176.574719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.384 5.384 3 C 0.049 3.951 4 C -0.216 4.216 5 C 0.135 3.865 6 N -0.664 5.664 7 C 0.108 3.892 8 C 0.049 3.951 9 C -0.464 4.464 10 H 0.058 0.942 11 C 0.066 3.934 12 N -0.888 5.888 13 Si 0.887 3.113 14 H -0.285 1.285 15 H -0.288 1.288 16 H -0.273 1.273 17 C -0.218 4.218 18 C -0.153 4.153 19 C 0.071 3.929 20 N -0.307 5.307 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.168 0.832 25 H 0.075 0.925 26 H 0.021 0.979 27 H 0.329 0.671 28 H 0.072 0.928 29 H -0.006 1.006 30 H 0.256 0.744 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.079 0.361 6.646 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.167 5.167 3 C -0.097 4.097 4 C -0.228 4.228 5 C 0.005 3.995 6 N -0.294 5.294 7 C -0.021 4.021 8 C 0.048 3.952 9 C -0.503 4.503 10 H 0.076 0.924 11 C -0.135 4.135 12 N -0.526 5.526 13 Si 0.715 3.285 14 H -0.211 1.211 15 H -0.214 1.214 16 H -0.198 1.198 17 C -0.255 4.255 18 C -0.191 4.191 19 C -0.116 4.116 20 N -0.129 5.129 21 H 0.088 0.912 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.185 0.815 25 H 0.094 0.906 26 H 0.039 0.961 27 H 0.146 0.854 28 H 0.090 0.910 29 H 0.012 0.988 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.474 -1.235 6.655 15.978 hybrid contribution 0.513 0.790 -0.141 0.953 sum -13.962 -0.445 6.514 15.413 Atomic orbital electron populations 1.21757 0.74802 1.04226 1.02835 1.48374 1.06296 1.03998 1.58011 1.22274 0.91079 0.93087 1.03238 1.20140 0.94116 0.94333 1.14213 1.20154 0.92886 0.95092 0.91372 1.60301 1.07508 1.51261 1.10306 1.21536 0.91277 0.91085 0.98208 1.18849 0.96484 0.89668 0.90161 1.20286 0.94994 1.06275 1.28704 0.92424 1.24924 0.96559 0.96662 0.95350 1.70018 1.03610 1.36945 1.42064 0.86675 0.78221 0.84805 0.78748 1.21101 1.21442 1.19783 1.22989 0.94992 1.07522 1.00002 1.22490 0.93166 1.01094 1.02342 1.23830 0.94824 0.94847 0.98072 1.77321 1.01908 1.08136 1.25488 0.91234 0.89781 0.89557 0.81464 0.90611 0.96129 0.85428 0.90957 0.98777 0.93422 0.90671 0.92360 0.92355 0.89786 0.79926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.85 11.47 59.85 0.69 1.53 16 2 N -0.38 -5.02 4.01 -68.16 -0.27 -5.29 16 3 C 0.05 0.64 11.40 -17.22 -0.20 0.44 16 4 C -0.22 -3.30 5.61 -105.05 -0.59 -3.89 16 5 C 0.14 2.20 6.16 -4.98 -0.03 2.17 16 6 N -0.66 -13.02 6.34 -115.06 -0.73 -13.75 16 7 C 0.11 2.38 5.51 -3.83 -0.02 2.36 16 8 C 0.05 1.21 1.64 -155.66 -0.25 0.96 16 9 C -0.46 -12.84 8.71 -34.44 -0.30 -13.14 16 10 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 11 C 0.07 1.85 5.43 -17.82 -0.10 1.75 16 12 N -0.89 -25.47 12.65 55.43 0.70 -24.77 16 13 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 C -0.22 -4.80 9.96 -26.69 -0.27 -5.06 16 18 C -0.15 -3.65 9.15 -26.69 -0.24 -3.90 16 19 C 0.07 1.12 11.96 -17.36 -0.21 0.91 16 20 N -0.31 -4.88 12.58 30.62 0.39 -4.49 16 21 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.33 6.15 8.78 -39.29 -0.34 5.81 16 28 H 0.07 1.77 8.13 -51.93 -0.42 1.35 16 29 H -0.01 -0.12 8.10 -51.93 -0.42 -0.54 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 2.17 8.14 -51.93 -0.42 1.75 16 35 H 0.18 2.65 8.06 -52.49 -0.42 2.22 16 LS Contribution 303.97 15.07 4.58 4.58 Total: -1.00 -31.40 303.97 -7.26 -38.66 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.38 Total: 4.13 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -1.52 Total: -15.86 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.08 Total: -48.31 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.40 -7.26 -38.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.405 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds