Wall clock time and date at job start Sun Mar 29 2020 22:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99702 * 2 1 4 4 H 1.48501 * 109.47065 * 92.42785 * 3 2 1 5 5 H 1.48505 * 109.46999 * 212.42539 * 3 2 1 6 6 H 1.48498 * 109.47617 * 332.42358 * 3 2 1 7 7 C 1.37877 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99723 * 352.23819 * 7 2 1 9 9 C 1.50695 * 119.99825 * 172.24970 * 7 2 1 10 10 C 1.53006 * 115.54616 * 268.95002 * 9 7 2 11 11 N 1.46899 * 109.47272 * 294.25006 * 10 9 7 12 12 C 1.46895 * 110.99935 * 191.74726 * 11 10 9 13 13 C 1.53002 * 109.47299 * 135.73633 * 12 11 10 14 14 C 1.53001 * 117.49880 * 14.46869 * 13 12 11 15 15 C 1.52993 * 117.49696 * 305.81110 * 13 12 11 16 16 C 1.53002 * 109.46966 * 255.73567 * 12 11 10 17 17 C 1.53006 * 117.49490 * 135.90856 * 16 12 11 18 18 C 1.53005 * 117.50003 * 67.25054 * 16 12 11 19 19 C 1.53002 * 117.50405 * 123.24822 * 9 7 2 20 20 C 1.52994 * 117.50312 * 54.62095 * 9 7 2 21 21 H 0.97001 * 120.00163 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46860 * 54.24683 * 10 9 7 23 23 H 1.09003 * 109.47170 * 174.24605 * 10 9 7 24 24 H 1.00897 * 110.99784 * 315.69899 * 11 10 9 25 25 H 1.09005 * 109.47404 * 15.73492 * 12 11 10 26 26 H 1.09001 * 115.55009 * 160.13641 * 13 12 11 27 27 H 1.09002 * 117.49696 * 0.02562 * 14 13 12 28 28 H 1.08999 * 117.49843 * 145.01506 * 14 13 12 29 29 H 1.09005 * 117.49797 * 214.97499 * 15 13 12 30 30 H 1.09005 * 117.50315 * 359.97217 * 15 13 12 31 31 H 1.08996 * 115.55027 * 281.57277 * 16 12 11 32 32 H 1.08995 * 117.50212 * 0.02562 * 17 16 12 33 33 H 1.09003 * 117.49323 * 145.02513 * 17 16 12 34 34 H 1.09000 * 117.49600 * 214.97812 * 18 16 12 35 35 H 1.08998 * 117.49214 * 359.97334 * 18 16 12 36 36 H 1.09002 * 117.49238 * 359.97438 * 19 9 7 37 37 H 1.08994 * 117.50160 * 145.01512 * 19 9 7 38 38 H 1.08999 * 117.50034 * 214.97743 * 20 9 7 39 39 H 1.09001 * 117.49956 * 0.02562 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5479 2.0168 1.3988 5 1 3.5201 1.4556 -0.7508 6 1 1.4219 2.6670 -0.6481 7 6 2.0045 -1.1941 -0.0005 8 1 1.4719 -2.1251 0.1254 9 6 3.5012 -1.1999 -0.1765 10 6 3.9954 -1.3202 -1.6196 11 7 3.6229 -2.6357 -2.1567 12 6 4.3114 -2.8997 -3.4272 13 6 4.8485 -4.3324 -3.4282 14 6 4.3151 -5.2876 -2.3586 15 6 5.7455 -4.7513 -2.2617 16 6 3.3285 -2.7228 -4.5863 17 6 3.8172 -1.9546 -5.8159 18 6 2.8080 -1.3106 -4.8619 19 6 4.3384 -1.8690 0.9154 20 6 4.3289 -0.3446 0.7847 21 1 -0.4850 0.8400 0.0004 22 1 3.5393 -0.5377 -2.2262 23 1 5.0798 -1.2121 -1.6425 24 1 3.8092 -3.3661 -1.4860 25 1 5.1400 -2.2010 -3.5435 26 1 5.0716 -4.7502 -4.4099 27 1 3.5812 -4.8954 -1.6545 28 1 4.1875 -6.3338 -2.6366 29 1 6.5585 -5.4451 -2.4759 30 1 5.9534 -4.0062 -1.4938 31 1 2.6423 -3.5533 -4.7517 32 1 4.8391 -1.5756 -5.7993 33 1 3.4521 -2.2795 -6.7902 34 1 1.7794 -1.2122 -5.2090 35 1 3.1656 -0.5078 -4.2172 36 1 3.8066 -2.3046 1.7613 37 1 5.2414 -2.3951 0.6059 38 1 5.2259 0.1321 0.3892 39 1 3.7911 0.2220 1.5448 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:31 Heat of formation + Delta-G solvation = 83.855061 kcal Electronic energy + Delta-G solvation = -17281.482390 eV Core-core repulsion = 14805.779322 eV Total energy + Delta-G solvation = -2475.703067 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.07610 -36.93692 -36.15305 -32.82959 -31.93893 -27.59769 -25.62413 -23.81472 -22.27734 -22.03253 -21.68447 -20.95159 -19.35412 -18.74451 -16.76239 -15.78923 -15.21994 -14.84999 -14.75681 -14.43255 -13.70421 -13.20133 -12.87737 -12.55706 -12.48586 -11.77416 -11.47022 -11.39115 -11.22064 -11.13017 -11.07368 -10.72446 -10.35933 -10.32863 -10.12763 -9.88072 -9.79357 -9.59648 -9.34986 -9.02396 -8.50536 -8.35936 -7.60437 -5.99131 -3.97812 3.34180 3.44600 3.48740 3.88811 4.11731 4.51357 4.65783 4.80074 4.99940 5.03402 5.15429 5.23997 5.28326 5.34142 5.45502 5.59685 5.70947 5.76443 5.84761 5.89697 6.04313 6.07184 6.10080 6.15585 6.21444 6.24832 6.32404 6.40341 6.44123 6.46689 6.57621 6.64866 6.76033 7.06078 7.25057 7.79486 7.88719 8.13954 8.63124 9.06476 9.64727 11.13368 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.009053 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.999799 B = 3092.164342 C = 3724.059882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.075 3.925 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.262 1.262 6 H -0.299 1.299 7 C -0.466 4.466 8 H 0.079 0.921 9 C 0.007 3.993 10 C 0.103 3.897 11 N -0.662 5.662 12 C 0.143 3.857 13 C -0.156 4.156 14 C -0.178 4.178 15 C -0.190 4.190 16 C -0.122 4.122 17 C -0.194 4.194 18 C -0.162 4.162 19 C -0.188 4.188 20 C -0.204 4.204 21 H 0.262 0.738 22 H 0.067 0.933 23 H 0.001 0.999 24 H 0.340 0.660 25 H 0.049 0.951 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.546 -6.048 -7.433 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.127 4.127 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.186 1.186 6 H -0.226 1.226 7 C -0.503 4.503 8 H 0.097 0.903 9 C 0.006 3.994 10 C -0.026 4.026 11 N -0.297 5.297 12 C 0.033 3.967 13 C -0.175 4.175 14 C -0.215 4.215 15 C -0.227 4.227 16 C -0.141 4.141 17 C -0.232 4.232 18 C -0.199 4.199 19 C -0.226 4.226 20 C -0.242 4.242 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.019 0.981 24 H 0.164 0.836 25 H 0.067 0.933 26 H 0.123 0.877 27 H 0.130 0.870 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.804 -5.711 -7.712 13.719 hybrid contribution 1.318 0.860 0.359 1.614 sum 11.122 -4.851 -7.353 14.188 Atomic orbital electron populations 1.69916 1.06258 1.26749 1.50732 1.24948 0.94532 0.98742 0.94440 0.86889 0.80226 0.83758 0.78123 1.20973 1.18610 1.22648 1.20124 0.86882 0.94527 1.48786 0.90349 1.19543 0.94499 0.98532 0.86852 1.21794 0.93690 0.90984 0.96151 1.60443 1.60450 1.04405 1.04399 1.20615 0.92627 0.92615 0.90842 1.22620 1.03760 0.96367 0.94747 1.23088 0.96794 0.98817 1.02829 1.23001 0.94188 1.03958 1.01509 1.22106 1.01414 0.95820 0.94757 1.23017 0.99456 1.06167 0.94553 1.22798 0.98461 0.96827 1.01839 1.22871 1.01465 0.94197 1.04049 1.22965 1.02129 0.93559 1.05537 0.92834 0.91483 0.98148 0.83586 0.93278 0.87666 0.86984 0.88946 0.89027 0.89045 0.88055 0.89570 0.89417 0.89116 0.88889 0.89495 0.91563 0.91110 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 2 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 22.05 24.81 -169.99 -4.22 17.83 16 4 H -0.28 -6.98 7.00 56.52 0.40 -6.59 16 5 H -0.26 -6.22 6.45 56.52 0.36 -5.86 16 6 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 7 C -0.47 -12.90 9.38 -34.44 -0.32 -13.23 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.01 0.16 0.97 -155.66 -0.15 0.01 16 10 C 0.10 2.13 5.46 -3.82 -0.02 2.11 16 11 N -0.66 -12.40 6.17 -106.72 -0.66 -13.06 16 12 C 0.14 2.23 2.66 -67.71 -0.18 2.05 16 13 C -0.16 -2.05 5.69 -90.62 -0.52 -2.56 16 14 C -0.18 -2.29 9.67 -26.70 -0.26 -2.55 16 15 C -0.19 -2.33 9.84 -26.70 -0.26 -2.59 16 16 C -0.12 -1.86 5.30 -90.61 -0.48 -2.34 16 17 C -0.19 -2.56 10.18 -26.69 -0.27 -2.83 16 18 C -0.16 -2.59 10.24 -26.69 -0.27 -2.87 16 19 C -0.19 -3.80 9.92 -26.73 -0.27 -4.06 16 20 C -0.20 -4.39 7.06 -26.73 -0.19 -4.58 16 21 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 22 H 0.07 1.51 6.73 -51.93 -0.35 1.16 16 23 H 0.00 0.01 7.73 -51.93 -0.40 -0.39 16 24 H 0.34 6.16 4.58 -39.29 -0.18 5.98 16 25 H 0.05 0.78 7.23 -51.93 -0.38 0.41 16 26 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.11 1.66 6.02 -51.93 -0.31 1.35 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.22 7.93 -51.93 -0.41 0.81 16 31 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.09 1.63 6.73 -51.93 -0.35 1.29 16 36 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.09 1.98 6.17 -51.93 -0.32 1.66 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -29.23 308.20 -9.27 -38.50 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.53 Total: 10.27 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: -3.29 Total: -31.39 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.11 Total: -39.86 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.22 Total: 17.83 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.23 -9.27 -38.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.356 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds