Wall clock time and date at job start Sun Mar 29 2020 22:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99702 * 2 1 4 4 H 1.48501 * 109.47065 * 92.42785 * 3 2 1 5 5 H 1.48505 * 109.46999 * 212.42539 * 3 2 1 6 6 H 1.48498 * 109.47617 * 332.42358 * 3 2 1 7 7 C 1.37877 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99723 * 352.23819 * 7 2 1 9 9 C 1.50695 * 119.99825 * 172.24970 * 7 2 1 10 10 C 1.53006 * 115.54616 * 268.95002 * 9 7 2 11 11 N 1.46899 * 109.47272 * 294.25006 * 10 9 7 12 12 C 1.46895 * 110.99935 * 191.74726 * 11 10 9 13 13 C 1.53002 * 109.47299 * 135.73633 * 12 11 10 14 14 C 1.53001 * 117.49880 * 14.46869 * 13 12 11 15 15 C 1.52993 * 117.49696 * 305.81110 * 13 12 11 16 16 C 1.53002 * 109.46966 * 255.73567 * 12 11 10 17 17 C 1.53006 * 117.49490 * 135.90856 * 16 12 11 18 18 C 1.53005 * 117.50003 * 67.25054 * 16 12 11 19 19 C 1.53002 * 117.50405 * 123.24822 * 9 7 2 20 20 C 1.52994 * 117.50312 * 54.62095 * 9 7 2 21 21 H 0.97001 * 120.00163 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46860 * 54.24683 * 10 9 7 23 23 H 1.09003 * 109.47170 * 174.24605 * 10 9 7 24 24 H 1.00897 * 110.99784 * 315.69899 * 11 10 9 25 25 H 1.09005 * 109.47404 * 15.73492 * 12 11 10 26 26 H 1.09001 * 115.55009 * 160.13641 * 13 12 11 27 27 H 1.09002 * 117.49696 * 0.02562 * 14 13 12 28 28 H 1.08999 * 117.49843 * 145.01506 * 14 13 12 29 29 H 1.09005 * 117.49797 * 214.97499 * 15 13 12 30 30 H 1.09005 * 117.50315 * 359.97217 * 15 13 12 31 31 H 1.08996 * 115.55027 * 281.57277 * 16 12 11 32 32 H 1.08995 * 117.50212 * 0.02562 * 17 16 12 33 33 H 1.09003 * 117.49323 * 145.02513 * 17 16 12 34 34 H 1.09000 * 117.49600 * 214.97812 * 18 16 12 35 35 H 1.08998 * 117.49214 * 359.97334 * 18 16 12 36 36 H 1.09002 * 117.49238 * 359.97438 * 19 9 7 37 37 H 1.08994 * 117.50160 * 145.01512 * 19 9 7 38 38 H 1.08999 * 117.50034 * 214.97743 * 20 9 7 39 39 H 1.09001 * 117.49956 * 0.02562 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5479 2.0168 1.3988 5 1 3.5201 1.4556 -0.7508 6 1 1.4219 2.6670 -0.6481 7 6 2.0045 -1.1941 -0.0005 8 1 1.4719 -2.1251 0.1254 9 6 3.5012 -1.1999 -0.1765 10 6 3.9954 -1.3202 -1.6196 11 7 3.6229 -2.6357 -2.1567 12 6 4.3114 -2.8997 -3.4272 13 6 4.8485 -4.3324 -3.4282 14 6 4.3151 -5.2876 -2.3586 15 6 5.7455 -4.7513 -2.2617 16 6 3.3285 -2.7228 -4.5863 17 6 3.8172 -1.9546 -5.8159 18 6 2.8080 -1.3106 -4.8619 19 6 4.3384 -1.8690 0.9154 20 6 4.3289 -0.3446 0.7847 21 1 -0.4850 0.8400 0.0004 22 1 3.5393 -0.5377 -2.2262 23 1 5.0798 -1.2121 -1.6425 24 1 3.8092 -3.3661 -1.4860 25 1 5.1400 -2.2010 -3.5435 26 1 5.0716 -4.7502 -4.4099 27 1 3.5812 -4.8954 -1.6545 28 1 4.1875 -6.3338 -2.6366 29 1 6.5585 -5.4451 -2.4759 30 1 5.9534 -4.0062 -1.4938 31 1 2.6423 -3.5533 -4.7517 32 1 4.8391 -1.5756 -5.7993 33 1 3.4521 -2.2795 -6.7902 34 1 1.7794 -1.2122 -5.2090 35 1 3.1656 -0.5078 -4.2172 36 1 3.8066 -2.3046 1.7613 37 1 5.2414 -2.3951 0.6059 38 1 5.2259 0.1321 0.3892 39 1 3.7911 0.2220 1.5448 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:31 Heat of formation + Delta-G solvation = 66.735410 kcal Electronic energy + Delta-G solvation = -17282.224753 eV Core-core repulsion = 14805.779322 eV Total energy + Delta-G solvation = -2476.445431 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32448 -38.58684 -37.25661 -34.35654 -34.00198 -28.97746 -27.62957 -25.38249 -23.42625 -23.28391 -23.12031 -22.06282 -20.92970 -20.22794 -18.44994 -17.43389 -16.75266 -16.44733 -15.85927 -15.74366 -15.37569 -14.75950 -14.60786 -14.28421 -13.94985 -13.29690 -13.04830 -12.80249 -12.58791 -12.51578 -12.31175 -12.19622 -12.08902 -11.89064 -11.48838 -11.31134 -11.01646 -10.96958 -10.88467 -10.73635 -10.48816 -10.24580 -9.03312 -8.22131 -6.23966 1.34172 1.38409 1.50112 2.40436 2.81010 2.94906 3.12502 3.17013 3.60906 3.71918 3.92764 4.04321 4.13477 4.17031 4.25633 4.30222 4.38387 4.40749 4.48787 4.53596 4.58661 4.78584 4.82136 4.82918 4.91935 4.98515 5.05252 5.08908 5.12550 5.26093 5.30310 5.34194 5.36904 5.42363 5.57033 5.76786 6.33154 6.46942 6.73378 6.81940 7.41755 8.94285 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.009053 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.999799 B = 3092.164342 C = 3724.059882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.015 3.985 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.238 1.238 6 H -0.306 1.306 7 C -0.459 4.459 8 H 0.030 0.970 9 C -0.021 4.021 10 C 0.114 3.886 11 N -0.681 5.681 12 C 0.144 3.856 13 C -0.157 4.157 14 C -0.185 4.185 15 C -0.177 4.177 16 C -0.133 4.133 17 C -0.158 4.158 18 C -0.191 4.191 19 C -0.166 4.166 20 C -0.202 4.202 21 H 0.261 0.739 22 H 0.043 0.957 23 H 0.024 0.976 24 H 0.343 0.657 25 H 0.050 0.950 26 H 0.125 0.875 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.846 -6.453 -8.457 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.161 1.161 6 H -0.234 1.234 7 C -0.497 4.497 8 H 0.049 0.951 9 C -0.022 4.022 10 C -0.015 4.015 11 N -0.316 5.316 12 C 0.034 3.966 13 C -0.176 4.176 14 C -0.222 4.222 15 C -0.214 4.214 16 C -0.152 4.152 17 C -0.195 4.195 18 C -0.228 4.228 19 C -0.203 4.203 20 C -0.239 4.239 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.042 0.958 24 H 0.167 0.833 25 H 0.068 0.932 26 H 0.143 0.857 27 H 0.105 0.895 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.135 -6.134 -8.733 16.924 hybrid contribution 0.224 0.869 0.690 1.132 sum 13.359 -5.265 -8.043 16.459 Atomic orbital electron populations 1.70074 1.08225 1.27534 1.53399 1.25777 0.95177 1.02585 0.94557 0.85901 0.79661 0.78953 0.78696 1.19961 1.16072 1.23404 1.20265 0.89778 0.92471 1.47143 0.95138 1.19438 0.91900 1.01827 0.89022 1.21519 0.94546 0.91434 0.93975 1.60377 1.61826 1.03725 1.05720 1.20639 0.92381 0.94394 0.89140 1.22596 1.04226 0.94771 0.96006 1.23061 0.96977 0.99713 1.02461 1.23054 0.94255 1.03699 1.00366 1.22169 1.01799 0.95028 0.96222 1.23074 0.99112 1.02962 0.94362 1.22751 0.99174 0.96982 1.03882 1.22879 1.01591 0.93812 1.02009 1.23021 1.02336 0.94356 1.04226 0.93015 0.93886 0.95846 0.83299 0.93213 0.85676 0.89530 0.87094 0.86600 0.90015 0.88406 0.88252 0.87229 0.89801 0.90967 0.90322 0.88119 0.88294 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 2 C 0.02 0.90 5.47 84.65 0.46 1.36 16 3 Si 0.94 45.92 24.81 68.60 1.70 47.62 16 4 H -0.27 -12.84 7.00 99.48 0.70 -12.14 16 5 H -0.24 -10.56 6.45 99.48 0.64 -9.92 16 6 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 7 C -0.46 -26.24 9.38 25.60 0.24 -26.00 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 9 C -0.02 -0.93 0.97 -52.93 -0.05 -0.99 16 10 C 0.11 4.61 5.46 86.31 0.47 5.08 16 11 N -0.68 -25.19 6.17 -491.55 -3.03 -28.22 16 12 C 0.14 4.24 2.66 44.92 0.12 4.36 16 13 C -0.16 -3.70 5.69 -10.79 -0.06 -3.76 16 14 C -0.18 -4.41 9.67 30.62 0.30 -4.12 16 15 C -0.18 -3.77 9.84 30.61 0.30 -3.47 16 16 C -0.13 -3.90 5.30 -10.79 -0.06 -3.96 16 17 C -0.16 -3.76 10.18 30.62 0.31 -3.45 16 18 C -0.19 -6.09 10.24 30.62 0.31 -5.77 16 19 C -0.17 -6.30 9.92 30.60 0.30 -6.00 16 20 C -0.20 -8.14 7.06 30.59 0.22 -7.92 16 21 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 22 H 0.04 1.92 6.73 -2.39 -0.02 1.91 16 23 H 0.02 0.84 7.73 -2.39 -0.02 0.82 16 24 H 0.34 12.23 4.58 -89.70 -0.41 11.82 16 25 H 0.05 1.47 7.23 -2.38 -0.02 1.45 16 26 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.09 2.54 6.02 -2.39 -0.01 2.53 16 28 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.08 1.92 7.93 -2.38 -0.02 1.90 16 31 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.10 2.14 8.10 -2.39 -0.02 2.12 16 33 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.07 2.59 6.73 -2.39 -0.02 2.58 16 36 H 0.08 3.11 8.14 -2.39 -0.02 3.10 16 37 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.07 3.17 6.17 -2.39 -0.01 3.15 16 Total: -1.00 -65.59 308.20 2.36 -63.23 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.53 Total: 32.72 kcal Atomic # 6 Polarization: -57.49 SS G_CDS: 2.87 Total: -54.63 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -2.73 Total: -88.94 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.70 Total: 47.62 kcal Total: -65.59 2.36 -63.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.964 kcal (2) G-P(sol) polarization free energy of solvation -65.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds