Wall clock time and date at job start Sun Mar 29 2020 22:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40094 * 126.03627 * 2 1 4 4 C 1.30829 * 108.20082 * 180.02562 * 3 2 1 5 5 C 1.39867 * 108.20797 * 359.77840 * 4 3 2 6 6 C 1.34942 * 126.03866 * 180.02562 * 2 1 3 7 7 C 1.50698 * 126.12534 * 359.94416 * 6 2 1 8 8 N 1.46904 * 109.47217 * 274.99609 * 7 6 2 9 9 C 1.46904 * 110.99787 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46936 * 184.37235 * 9 8 7 11 11 C 1.50702 * 115.54841 * 301.90436 * 10 9 8 12 12 H 1.08006 * 119.99589 * 95.21382 * 11 10 9 13 13 C 1.37870 * 120.00144 * 275.21363 * 11 10 9 14 14 N 1.31514 * 120.00201 * 7.19663 * 13 11 10 15 15 Si 1.86806 * 119.99973 * 187.19851 * 13 11 10 16 16 H 1.48504 * 109.47093 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47108 * 299.99862 * 15 13 11 18 18 H 1.48497 * 109.47269 * 59.99934 * 15 13 11 19 19 C 1.53002 * 117.49994 * 87.57206 * 10 9 8 20 20 C 1.52996 * 117.49954 * 156.23249 * 10 9 8 21 21 H 1.08996 * 109.47333 * 269.97957 * 1 2 3 22 22 H 1.09005 * 109.47095 * 29.97574 * 1 2 3 23 23 H 1.08997 * 109.46858 * 149.97697 * 1 2 3 24 24 H 1.08011 * 125.89610 * 179.97438 * 4 3 2 25 25 H 1.08007 * 126.04317 * 180.23214 * 5 4 3 26 26 H 1.09005 * 109.47183 * 155.00180 * 7 6 2 27 27 H 1.08995 * 109.47302 * 34.99902 * 7 6 2 28 28 H 1.00901 * 110.99574 * 56.05363 * 8 7 6 29 29 H 1.09002 * 109.47233 * 64.37379 * 9 8 7 30 30 H 1.08998 * 109.47093 * 304.36952 * 9 8 7 31 31 H 0.97002 * 119.99505 * 355.40597 * 14 13 11 32 32 H 1.08992 * 117.49889 * 215.00294 * 19 10 9 33 33 H 1.08997 * 117.49716 * 0.02605 * 19 10 9 34 34 H 1.08996 * 117.49785 * 359.97438 * 20 10 9 35 35 H 1.09005 * 117.49277 * 144.97049 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1329 0.0000 4 6 3.5346 0.7322 -0.0006 5 6 3.5437 -0.6665 0.0042 6 6 2.2589 -1.0912 -0.0005 7 6 1.7973 -2.5257 0.0001 8 7 1.5336 -2.9548 1.3801 9 6 1.0812 -4.3518 1.4196 10 6 0.7133 -4.7283 2.8562 11 6 1.8157 -4.5719 3.8717 12 1 1.8866 -3.6668 4.4567 13 6 2.7338 -5.5843 4.0540 14 7 2.7353 -6.6235 3.2481 15 14 3.9754 -5.4797 5.4458 16 1 4.8433 -6.6847 5.4264 17 1 4.8111 -4.2644 5.2733 18 1 3.2586 -5.4074 6.7443 19 6 -0.7174 -4.4425 3.3171 20 6 -0.2709 -5.8828 3.0541 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 4.4054 1.3711 -0.0011 25 1 4.4211 -1.2963 0.0085 26 1 2.5724 -3.1570 -0.4348 27 1 0.8843 -2.6139 -0.5886 28 1 0.8651 -2.3451 1.8267 29 1 1.8811 -5.0029 1.0669 30 1 0.2077 -4.4692 0.7783 31 1 2.0495 -6.7105 2.5676 32 1 -0.8613 -4.1415 4.3547 33 1 -1.3967 -3.9867 2.5967 34 1 -0.6566 -6.3740 2.1607 35 1 -0.1207 -6.5296 3.9185 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:46 Heat of formation + Delta-G solvation = 101.158747 kcal Electronic energy + Delta-G solvation = -16462.925550 eV Core-core repulsion = 13884.432483 eV Total energy + Delta-G solvation = -2578.493067 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.02853 -37.40033 -34.83412 -33.01397 -31.78721 -30.38089 -26.69207 -26.38082 -24.73848 -23.24271 -21.27649 -20.97770 -19.78420 -19.22418 -16.86267 -16.30953 -15.51479 -15.12542 -14.44390 -14.07261 -13.76385 -13.66157 -13.42233 -13.23050 -12.66305 -12.40739 -12.21569 -12.03412 -11.91023 -11.32973 -10.82332 -10.70802 -10.47907 -10.46361 -10.04509 -9.58005 -9.15764 -8.52303 -8.44937 -8.31960 -8.23600 -7.73573 -6.25275 -3.95103 2.00238 2.63584 3.03110 3.50032 3.52200 3.69951 4.57111 4.61118 4.64067 4.90060 5.10558 5.17004 5.20389 5.27673 5.37835 5.42560 5.74812 5.83878 5.90734 5.98087 6.07680 6.22986 6.29382 6.41419 6.49630 6.61065 6.83050 6.84307 7.12674 7.21301 7.24424 7.70224 7.84845 7.91904 8.35324 8.53334 8.97674 9.76341 11.14765 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.006944 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.669067 B = 4031.250257 C = 4692.194658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.374 5.374 3 N -0.306 5.306 4 C 0.044 3.956 5 C -0.256 4.256 6 C 0.098 3.902 7 C 0.120 3.880 8 N -0.654 5.654 9 C 0.103 3.897 10 C 0.026 3.974 11 C -0.548 4.548 12 H 0.051 0.949 13 C 0.026 3.974 14 N -0.911 5.911 15 Si 1.065 2.935 16 H -0.285 1.285 17 H -0.288 1.288 18 H -0.291 1.291 19 C -0.202 4.202 20 C -0.179 4.179 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.181 0.819 25 H 0.148 0.852 26 H 0.095 0.905 27 H 0.029 0.971 28 H 0.333 0.667 29 H 0.072 0.928 30 H -0.002 1.002 31 H 0.271 0.729 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 9.109 -7.363 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.158 5.158 3 N -0.128 5.128 4 C -0.142 4.142 5 C -0.285 4.285 6 C -0.030 4.030 7 C -0.011 4.011 8 N -0.284 5.284 9 C -0.026 4.026 10 C 0.025 3.975 11 C -0.586 4.586 12 H 0.069 0.931 13 C -0.178 4.178 14 N -0.547 5.547 15 Si 0.894 3.106 16 H -0.210 1.210 17 H -0.214 1.214 18 H -0.217 1.217 19 C -0.239 4.239 20 C -0.217 4.217 21 H 0.093 0.907 22 H 0.105 0.895 23 H 0.101 0.899 24 H 0.198 0.802 25 H 0.166 0.834 26 H 0.113 0.887 27 H 0.047 0.953 28 H 0.151 0.849 29 H 0.090 0.910 30 H 0.016 0.984 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.437 9.171 -6.565 11.539 hybrid contribution -1.797 0.187 -1.000 2.065 sum -4.234 9.358 -7.565 12.757 Atomic orbital electron populations 1.21802 0.74963 1.03962 1.03455 1.48419 1.06242 1.03581 1.57557 1.77272 1.01921 1.08058 1.25549 1.23786 0.95087 0.95193 1.00114 1.21255 0.96534 0.94722 1.16034 1.21068 0.91400 0.90014 1.00472 1.20545 0.99891 0.88389 0.92272 1.60271 1.51517 1.03989 1.12671 1.21652 0.96326 0.87830 0.96765 1.19151 0.88656 0.96974 0.92708 1.21076 1.12783 1.04119 1.20603 0.93066 1.25669 0.98906 0.93156 1.00088 1.70754 1.34087 1.31260 1.18585 0.83596 0.75944 0.75934 0.75113 1.21003 1.21404 1.21748 1.22906 1.00699 0.99825 1.00516 1.22762 1.06582 0.90949 1.01401 0.90679 0.89499 0.89904 0.80213 0.83447 0.88658 0.95324 0.84949 0.90997 0.98395 0.91758 0.90155 0.92020 0.91705 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 11.27 59.85 0.67 1.77 16 2 N -0.37 -5.60 4.01 -63.89 -0.26 -5.86 16 3 N -0.31 -4.87 12.58 30.62 0.39 -4.49 16 4 C 0.04 0.63 12.02 -17.37 -0.21 0.42 16 5 C -0.26 -3.95 10.72 -40.01 -0.43 -4.38 16 6 C 0.10 1.54 6.44 -82.27 -0.53 1.01 16 7 C 0.12 1.88 5.85 -4.97 -0.03 1.85 16 8 N -0.65 -12.57 6.28 -115.05 -0.72 -13.29 16 9 C 0.10 2.17 5.50 -3.82 -0.02 2.15 16 10 C 0.03 0.61 1.06 -155.66 -0.16 0.45 16 11 C -0.55 -14.94 8.59 -34.44 -0.30 -15.24 16 12 H 0.05 1.45 7.82 -52.48 -0.41 1.04 16 13 C 0.03 0.74 5.39 -17.82 -0.10 0.64 16 14 N -0.91 -26.61 13.57 55.43 0.75 -25.86 16 15 Si 1.07 25.30 29.91 -169.99 -5.08 20.21 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.20 -4.23 9.94 -26.69 -0.27 -4.50 16 20 C -0.18 -4.01 8.76 -26.70 -0.23 -4.24 16 21 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.08 0.78 7.15 -51.93 -0.37 0.41 16 24 H 0.18 1.93 8.06 -52.48 -0.42 1.50 16 25 H 0.15 2.12 8.06 -52.48 -0.42 1.70 16 26 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.03 0.40 7.24 -51.93 -0.38 0.02 16 28 H 0.33 6.26 8.67 -39.29 -0.34 5.92 16 29 H 0.07 1.68 7.75 -51.93 -0.40 1.27 16 30 H 0.00 -0.04 8.10 -51.93 -0.42 -0.46 16 31 H 0.27 7.79 6.14 -40.82 -0.25 7.54 16 32 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 2.06 8.14 -51.93 -0.42 1.63 16 LS Contribution 299.20 15.07 4.51 4.51 Total: -1.00 -31.25 299.20 -7.19 -38.44 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.17 Total: 6.41 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -1.60 Total: -20.08 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.16 Total: -49.50 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.21 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.25 -7.19 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.602 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds