Wall clock time and date at job start Sun Mar 29 2020 22:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40094 * 126.03627 * 2 1 4 4 C 1.30829 * 108.20082 * 180.02562 * 3 2 1 5 5 C 1.39867 * 108.20797 * 359.77840 * 4 3 2 6 6 C 1.34942 * 126.03866 * 180.02562 * 2 1 3 7 7 C 1.50698 * 126.12534 * 359.94416 * 6 2 1 8 8 N 1.46904 * 109.47217 * 274.99609 * 7 6 2 9 9 C 1.46904 * 110.99787 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46936 * 184.37235 * 9 8 7 11 11 C 1.50702 * 115.54841 * 301.90436 * 10 9 8 12 12 H 1.08006 * 119.99589 * 95.21382 * 11 10 9 13 13 C 1.37870 * 120.00144 * 275.21363 * 11 10 9 14 14 N 1.31514 * 120.00201 * 7.19663 * 13 11 10 15 15 Si 1.86806 * 119.99973 * 187.19851 * 13 11 10 16 16 H 1.48504 * 109.47093 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47108 * 299.99862 * 15 13 11 18 18 H 1.48497 * 109.47269 * 59.99934 * 15 13 11 19 19 C 1.53002 * 117.49994 * 87.57206 * 10 9 8 20 20 C 1.52996 * 117.49954 * 156.23249 * 10 9 8 21 21 H 1.08996 * 109.47333 * 269.97957 * 1 2 3 22 22 H 1.09005 * 109.47095 * 29.97574 * 1 2 3 23 23 H 1.08997 * 109.46858 * 149.97697 * 1 2 3 24 24 H 1.08011 * 125.89610 * 179.97438 * 4 3 2 25 25 H 1.08007 * 126.04317 * 180.23214 * 5 4 3 26 26 H 1.09005 * 109.47183 * 155.00180 * 7 6 2 27 27 H 1.08995 * 109.47302 * 34.99902 * 7 6 2 28 28 H 1.00901 * 110.99574 * 56.05363 * 8 7 6 29 29 H 1.09002 * 109.47233 * 64.37379 * 9 8 7 30 30 H 1.08998 * 109.47093 * 304.36952 * 9 8 7 31 31 H 0.97002 * 119.99505 * 355.40597 * 14 13 11 32 32 H 1.08992 * 117.49889 * 215.00294 * 19 10 9 33 33 H 1.08997 * 117.49716 * 0.02605 * 19 10 9 34 34 H 1.08996 * 117.49785 * 359.97438 * 20 10 9 35 35 H 1.09005 * 117.49277 * 144.97049 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1329 0.0000 4 6 3.5346 0.7322 -0.0006 5 6 3.5437 -0.6665 0.0042 6 6 2.2589 -1.0912 -0.0005 7 6 1.7973 -2.5257 0.0001 8 7 1.5336 -2.9548 1.3801 9 6 1.0812 -4.3518 1.4196 10 6 0.7133 -4.7283 2.8562 11 6 1.8157 -4.5719 3.8717 12 1 1.8866 -3.6668 4.4567 13 6 2.7338 -5.5843 4.0540 14 7 2.7353 -6.6235 3.2481 15 14 3.9754 -5.4797 5.4458 16 1 4.8433 -6.6847 5.4264 17 1 4.8111 -4.2644 5.2733 18 1 3.2586 -5.4074 6.7443 19 6 -0.7174 -4.4425 3.3171 20 6 -0.2709 -5.8828 3.0541 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 4.4054 1.3711 -0.0011 25 1 4.4211 -1.2963 0.0085 26 1 2.5724 -3.1570 -0.4348 27 1 0.8843 -2.6139 -0.5886 28 1 0.8651 -2.3451 1.8267 29 1 1.8811 -5.0029 1.0669 30 1 0.2077 -4.4692 0.7783 31 1 2.0495 -6.7105 2.5676 32 1 -0.8613 -4.1415 4.3547 33 1 -1.3967 -3.9867 2.5967 34 1 -0.6566 -6.3740 2.1607 35 1 -0.1207 -6.5296 3.9185 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:46 Heat of formation + Delta-G solvation = 80.798693 kcal Electronic energy + Delta-G solvation = -16463.808428 eV Core-core repulsion = 13884.432483 eV Total energy + Delta-G solvation = -2579.375945 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15137 -39.12696 -36.30389 -34.06888 -33.84286 -31.64997 -27.95022 -27.57045 -26.75033 -24.72480 -23.00480 -22.08509 -21.35265 -20.68426 -18.61765 -17.60596 -16.76507 -16.56596 -15.64887 -15.60092 -15.48871 -15.20233 -14.79718 -14.56880 -14.24731 -13.64805 -13.54613 -13.30532 -13.17845 -12.92886 -12.65006 -12.56562 -12.20330 -11.93374 -11.62745 -11.35009 -10.44713 -10.36874 -10.32448 -10.15544 -9.49682 -9.18947 -8.42644 -6.11824 0.84199 1.56849 1.62567 1.63410 1.81917 1.88781 2.63925 3.14614 3.33256 3.49470 3.65738 3.71569 4.01745 4.21098 4.28933 4.36322 4.37361 4.49011 4.55016 4.56037 4.64355 4.78792 4.82512 4.83014 4.87526 5.09049 5.26252 5.44390 5.52890 5.74717 6.03311 6.16670 6.28241 6.38449 6.50539 6.73397 6.85114 7.64630 8.98857 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.006944 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.669067 B = 4031.250257 C = 4692.194658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.377 5.377 3 N -0.329 5.329 4 C 0.043 3.957 5 C -0.275 4.275 6 C 0.086 3.914 7 C 0.127 3.873 8 N -0.671 5.671 9 C 0.119 3.881 10 C -0.005 4.005 11 C -0.553 4.553 12 H 0.034 0.966 13 C -0.020 4.020 14 N -0.937 5.937 15 Si 1.103 2.897 16 H -0.287 1.287 17 H -0.280 1.280 18 H -0.277 1.277 19 C -0.176 4.176 20 C -0.182 4.182 21 H 0.079 0.921 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.211 0.789 25 H 0.151 0.849 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.336 0.664 29 H 0.042 0.958 30 H 0.024 0.976 31 H 0.265 0.735 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 10.149 -7.871 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.160 5.160 3 N -0.151 5.151 4 C -0.141 4.141 5 C -0.305 4.305 6 C -0.042 4.042 7 C -0.003 4.003 8 N -0.302 5.302 9 C -0.010 4.010 10 C -0.005 4.005 11 C -0.591 4.591 12 H 0.052 0.948 13 C -0.219 4.219 14 N -0.575 5.575 15 Si 0.928 3.072 16 H -0.212 1.212 17 H -0.206 1.206 18 H -0.203 1.203 19 C -0.213 4.213 20 C -0.220 4.220 21 H 0.097 0.903 22 H 0.120 0.880 23 H 0.119 0.881 24 H 0.228 0.772 25 H 0.168 0.832 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.154 0.846 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.321 10.232 -7.077 12.877 hybrid contribution -1.575 -0.083 -0.848 1.790 sum -4.896 10.149 -7.925 13.776 Atomic orbital electron populations 1.22114 0.72993 1.05671 1.04247 1.48716 1.07461 1.02966 1.56898 1.77229 1.02661 1.08902 1.26357 1.24289 0.95683 0.95184 0.98987 1.21528 0.96870 0.95563 1.16510 1.21108 0.91861 0.90208 1.01026 1.20479 1.00875 0.88277 0.90673 1.60131 1.51812 1.03167 1.15136 1.21302 0.96156 0.88353 0.95195 1.19238 0.88980 0.98771 0.93541 1.21314 1.13744 1.03072 1.21016 0.94811 1.26753 1.00697 0.93019 1.01428 1.70843 1.34726 1.32302 1.19581 0.83089 0.74555 0.75968 0.73634 1.21242 1.20564 1.20311 1.22911 0.99134 0.98289 1.01005 1.22687 1.06723 0.91336 1.01254 0.90284 0.87958 0.88142 0.77231 0.83161 0.89075 0.92730 0.84615 0.94002 0.95791 0.92496 0.90798 0.88534 0.89699 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.75 11.27 127.77 1.44 3.19 16 2 N -0.38 -10.56 4.01 -356.04 -1.43 -11.99 16 3 N -0.33 -9.96 12.58 -57.02 -0.72 -10.67 16 4 C 0.04 1.18 12.02 85.24 1.02 2.21 16 5 C -0.27 -8.21 10.72 21.99 0.24 -7.98 16 6 C 0.09 2.59 6.44 41.41 0.27 2.85 16 7 C 0.13 3.77 5.85 85.56 0.50 4.27 16 8 N -0.67 -24.86 6.28 -517.91 -3.25 -28.11 16 9 C 0.12 4.85 5.50 86.30 0.47 5.33 16 10 C 0.00 -0.21 1.06 -52.93 -0.06 -0.27 16 11 C -0.55 -30.26 8.59 25.60 0.22 -30.04 16 12 H 0.03 1.91 7.82 -2.91 -0.02 1.89 16 13 C -0.02 -1.11 5.39 84.65 0.46 -0.65 16 14 N -0.94 -55.42 13.57 21.44 0.29 -55.13 16 15 Si 1.10 51.21 29.91 68.60 2.05 53.26 16 16 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 C -0.18 -6.97 9.94 30.62 0.30 -6.67 16 20 C -0.18 -7.97 8.76 30.62 0.27 -7.70 16 21 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 23 H 0.10 1.57 7.15 -2.39 -0.02 1.55 16 24 H 0.21 4.06 8.06 -2.90 -0.02 4.04 16 25 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 26 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 27 H 0.05 1.35 7.24 -2.39 -0.02 1.33 16 28 H 0.34 11.99 8.67 -89.69 -0.78 11.21 16 29 H 0.04 1.95 7.75 -2.39 -0.02 1.93 16 30 H 0.02 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.26 15.46 6.14 -92.71 -0.57 14.89 16 32 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 35 H 0.06 2.84 8.14 -2.38 -0.02 2.82 16 Total: -1.00 -66.56 299.20 2.57 -63.99 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.50 Total: 24.12 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 5.14 Total: -35.46 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -5.11 Total: -105.91 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.05 Total: 53.26 kcal Total: -66.56 2.57 -63.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.790 kcal (2) G-P(sol) polarization free energy of solvation -66.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds