Wall clock time and date at job start Sun Mar 29 2020 22:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47426 * 2 1 4 4 C 1.46899 * 110.99905 * 195.04202 * 3 2 1 5 5 C 1.50696 * 109.47223 * 66.04392 * 4 3 2 6 6 H 1.08000 * 120.00033 * 0.27613 * 5 4 3 7 7 C 1.37878 * 120.00234 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99823 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00382 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46882 * 90.00258 * 9 7 5 11 11 H 1.48495 * 109.47364 * 210.00228 * 9 7 5 12 12 H 1.48502 * 109.47428 * 330.00680 * 9 7 5 13 13 C 1.39283 * 111.00391 * 71.08397 * 3 2 1 14 14 N 1.32261 * 119.74150 * 61.70215 * 13 3 2 15 15 C 1.32052 * 121.69604 * 179.75415 * 14 13 3 16 16 C 1.38007 * 120.98983 * 0.52741 * 15 14 13 17 17 C 1.50698 * 120.30536 * 179.71946 * 16 15 14 18 18 C 1.38836 * 119.38288 * 359.74602 * 16 15 14 19 19 C 1.38856 * 118.44543 * 359.97438 * 18 16 15 20 20 N 1.40007 * 120.51616 * 179.97438 * 19 18 16 21 21 H 1.08999 * 109.47076 * 301.64311 * 1 2 3 22 22 H 1.09010 * 109.46671 * 61.63682 * 1 2 3 23 23 H 1.08999 * 109.47485 * 181.63531 * 1 2 3 24 24 H 1.08997 * 109.46966 * 239.99648 * 2 1 3 25 25 H 1.09005 * 109.46903 * 119.99892 * 2 1 3 26 26 H 1.08998 * 109.47109 * 306.03930 * 4 3 2 27 27 H 1.09002 * 109.46958 * 186.04024 * 4 3 2 28 28 H 0.96998 * 120.00082 * 179.97438 * 8 7 5 29 29 H 1.08003 * 119.50372 * 180.26953 * 15 14 13 30 30 H 1.08998 * 109.47177 * 270.02496 * 17 16 15 31 31 H 1.09003 * 109.47401 * 30.02377 * 17 16 15 32 32 H 1.09000 * 109.47091 * 150.02489 * 17 16 15 33 33 H 1.08007 * 120.77386 * 180.02562 * 18 16 15 34 34 H 0.96998 * 120.00285 * 174.50783 * 20 19 18 35 35 H 0.97002 * 120.00014 * 354.51597 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4439 1.4397 -0.3559 5 6 3.6219 0.9965 -1.7852 6 1 2.7625 0.7076 -2.3720 7 6 4.8812 0.9655 -2.3457 8 7 5.9273 1.3225 -1.6327 9 14 5.1020 0.4154 -4.1171 10 1 5.0014 1.5924 -5.0171 11 1 6.4361 -0.2169 -4.2764 12 1 4.0439 -0.5664 -4.4661 13 6 1.7888 1.9962 1.2301 14 7 2.3527 1.5071 2.3219 15 6 2.1641 2.0586 3.5068 16 6 1.3567 3.1682 3.6537 17 6 1.1471 3.7814 5.0143 18 6 0.7389 3.7139 2.5365 19 6 0.9589 3.1178 1.3018 20 7 0.3572 3.6319 0.1469 21 1 -0.3633 0.5391 0.8749 22 1 -0.3633 0.4883 -0.9044 23 1 -0.3634 -1.0272 0.0293 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 4.0086 0.7794 0.3023 27 1 3.8072 2.4613 -0.2445 28 1 6.8133 1.3004 -2.0269 29 1 2.6455 1.6325 4.3746 30 1 0.2844 3.3178 5.4928 31 1 2.0337 3.6180 5.6270 32 1 0.9716 4.8518 4.9072 33 1 0.1028 4.5822 2.6256 34 1 0.5778 3.2603 -0.7215 35 1 -0.2803 4.3599 0.2151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085425559.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:13 Heat of formation + Delta-G solvation = 35.487985 kcal Electronic energy + Delta-G solvation = -16741.156612 eV Core-core repulsion = 14159.815848 eV Total energy + Delta-G solvation = -2581.340765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.02282 -36.53670 -34.56686 -32.88868 -32.29669 -29.97567 -28.73247 -27.28493 -25.23070 -23.17757 -22.36692 -21.47192 -19.97865 -17.18607 -16.51011 -15.95258 -15.72791 -15.01833 -14.63470 -14.19557 -13.79343 -13.57748 -13.13211 -12.67147 -12.57506 -12.36156 -12.16840 -12.08135 -11.66079 -11.21727 -11.00534 -10.80058 -10.69587 -10.45506 -10.22681 -9.97298 -9.36205 -8.92495 -8.71395 -8.43408 -7.49337 -7.07249 -5.99857 -4.02236 1.65046 1.95948 3.33014 3.39031 3.42283 4.25733 4.32056 4.41728 4.69434 5.08687 5.24895 5.32918 5.35458 5.44682 5.65324 5.68145 5.83197 5.93354 6.02366 6.06957 6.23711 6.24517 6.48548 6.64374 6.74852 6.86397 6.97645 7.35549 7.51842 7.73082 7.87881 8.10106 8.20000 8.23112 8.64763 8.67967 9.04920 9.61185 11.10809 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032101 B = 0.006816 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.044884 B = 4107.194432 C = 4353.972270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.061 3.939 3 N -0.486 5.486 4 C 0.203 3.797 5 C -0.511 4.511 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.245 3.755 14 N -0.468 5.468 15 C 0.040 3.960 16 C -0.111 4.111 17 C -0.103 4.103 18 C -0.171 4.171 19 C 0.196 3.804 20 N -0.859 5.859 21 H 0.040 0.960 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.088 0.912 25 H 0.036 0.964 26 H 0.007 0.993 27 H 0.025 0.975 28 H 0.261 0.739 29 H 0.141 0.859 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.413 0.587 35 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 3.979 8.209 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 N -0.210 5.210 4 C 0.079 3.921 5 C -0.549 4.549 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.009 3.991 14 N -0.179 5.179 15 C -0.119 4.119 16 C -0.113 4.113 17 C -0.161 4.161 18 C -0.202 4.202 19 C 0.086 3.914 20 N -0.399 5.399 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.107 0.893 25 H 0.054 0.946 26 H 0.025 0.975 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.245 0.755 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.117 3.478 7.768 14.001 hybrid contribution 0.085 0.282 -0.560 0.632 sum -11.032 3.760 7.208 13.704 Atomic orbital electron populations 1.21757 0.96766 1.00182 1.01191 1.21989 0.93699 0.89032 1.01921 1.60324 1.23316 1.17113 1.20281 1.19703 0.79327 0.97136 0.95905 1.21147 0.92812 1.44352 0.96627 0.91768 1.24987 0.95878 0.95593 0.98055 1.69984 0.98754 1.48177 1.36513 0.86495 0.77371 0.78757 0.84736 1.20720 1.21333 1.19826 1.19794 0.96044 0.93610 0.89624 1.67713 1.19875 1.31201 0.99093 1.22055 0.99995 0.95132 0.94737 1.20509 0.98223 0.97005 0.95578 1.20638 1.02016 1.00175 0.93236 1.20709 1.05890 1.02642 0.90967 1.18449 0.92788 0.92434 0.87731 1.42386 1.49187 1.41126 1.07152 0.94087 0.92545 0.93274 0.89346 0.94592 0.97534 0.95720 0.92918 0.84144 0.91509 0.91534 0.91913 0.85745 0.75549 0.78350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.98 37.16 0.37 -2.00 16 2 C 0.06 1.26 5.49 -3.82 -0.02 1.24 16 3 N -0.49 -10.82 3.64 -174.32 -0.63 -11.46 16 4 C 0.20 5.51 4.49 -4.98 -0.02 5.49 16 5 C -0.51 -14.34 8.29 -34.44 -0.29 -14.62 16 6 H 0.06 1.75 7.25 -52.49 -0.38 1.37 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 9 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.25 5.09 4.41 -154.65 -0.68 4.41 16 14 N -0.47 -9.83 9.53 -12.24 -0.12 -9.94 16 15 C 0.04 0.68 10.84 -17.54 -0.19 0.49 16 16 C -0.11 -1.62 5.89 -104.49 -0.62 -2.23 16 17 C -0.10 -1.07 10.03 36.00 0.36 -0.71 16 18 C -0.17 -2.55 9.72 -39.13 -0.38 -2.93 16 19 C 0.20 3.41 6.81 -83.34 -0.57 2.85 16 20 N -0.86 -12.57 9.08 32.62 0.30 -12.28 16 21 H 0.04 0.69 7.51 -51.93 -0.39 0.30 16 22 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.09 1.93 6.60 -51.93 -0.34 1.59 16 25 H 0.04 0.78 7.59 -51.93 -0.39 0.38 16 26 H 0.01 0.20 8.10 -51.93 -0.42 -0.22 16 27 H 0.02 0.73 8.06 -51.93 -0.42 0.32 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 29 H 0.14 2.06 8.06 -52.48 -0.42 1.64 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 34 H 0.41 6.60 8.15 -40.82 -0.33 6.27 16 35 H 0.39 4.31 8.86 -40.82 -0.36 3.95 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -31.62 294.98 -7.55 -39.17 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.13 Total: 6.31 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.13 Total: -6.50 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.28 Total: -60.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.62 -7.55 -39.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085425559.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.659 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds