Wall clock time and date at job start Sun Mar 29 2020 22:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46900 * 109.47534 * 2 1 4 4 C 1.46898 * 110.99793 * 287.85466 * 3 2 1 5 5 C 1.50707 * 109.47140 * 164.13691 * 4 3 2 6 6 H 1.07996 * 119.99544 * 354.83826 * 5 4 3 7 7 C 1.37873 * 120.00118 * 174.83989 * 5 4 3 8 8 N 1.31510 * 119.99793 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00020 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47218 * 89.99954 * 9 7 5 11 11 H 1.48500 * 109.46912 * 210.00102 * 9 7 5 12 12 H 1.48504 * 109.46824 * 329.99756 * 9 7 5 13 13 C 1.46898 * 110.99886 * 163.90011 * 3 2 1 14 14 C 1.50693 * 109.47578 * 293.95481 * 13 3 2 15 15 C 1.38066 * 119.57641 * 94.99660 * 14 13 3 16 16 C 1.38835 * 119.32732 * 180.02562 * 15 14 13 17 17 C 1.38333 * 118.51003 * 0.02562 * 16 15 14 18 18 C 1.39097 * 119.09818 * 359.97438 * 17 16 15 19 19 N 1.39008 * 119.70634 * 180.02562 * 18 17 16 20 20 N 1.31947 * 119.56993 * 274.73717 * 14 13 3 21 21 H 1.08996 * 109.47792 * 186.13206 * 1 2 3 22 22 H 1.09000 * 109.47009 * 306.14115 * 1 2 3 23 23 H 1.09006 * 109.46782 * 66.13154 * 1 2 3 24 24 H 1.09009 * 109.47291 * 239.99915 * 2 1 3 25 25 H 1.09001 * 109.47151 * 120.00269 * 2 1 3 26 26 H 1.09005 * 109.47331 * 284.13479 * 4 3 2 27 27 H 1.08996 * 109.47271 * 44.13320 * 4 3 2 28 28 H 0.97005 * 120.00334 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47255 * 53.95742 * 13 3 2 30 30 H 1.09010 * 109.47013 * 173.95006 * 13 3 2 31 31 H 1.08000 * 120.33059 * 359.97438 * 15 14 13 32 32 H 1.08008 * 120.74330 * 180.02562 * 16 15 14 33 33 H 1.08004 * 120.45295 * 180.02562 * 17 16 15 34 34 H 0.97002 * 119.99982 * 0.02562 * 19 18 17 35 35 H 0.97000 * 120.00023 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7988 2.0214 -1.3054 5 6 1.9417 3.5152 -1.1665 6 1 2.0905 3.9551 -0.1915 7 6 1.8824 4.3203 -2.2842 8 7 2.0066 5.6239 -2.1630 9 14 1.6256 3.5594 -3.9708 10 1 0.1714 3.4751 -4.2597 11 1 2.2866 4.4017 -4.9997 12 1 2.2147 2.1964 -3.9938 13 6 3.4374 1.4419 0.3803 14 6 3.5906 1.0075 1.8151 15 6 3.9047 -0.3065 2.0995 16 6 4.0440 -0.7012 3.4232 17 6 3.8611 0.2438 4.4168 18 6 3.5461 1.5502 4.0580 19 7 3.3600 2.5102 5.0460 20 7 3.4278 1.8891 2.7833 21 1 -0.3634 -1.0217 0.1098 22 1 -0.3633 0.6061 0.8299 23 1 -0.3633 0.4159 -0.9398 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.5343 1.6509 -2.0195 27 1 0.7960 1.7838 -1.6604 28 1 1.9652 6.1903 -2.9494 29 1 4.0134 0.7776 -0.2639 30 1 3.8028 2.4629 0.2687 31 1 4.0398 -1.0202 1.3003 32 1 4.2898 -1.7232 3.6717 33 1 3.9623 -0.0289 5.4569 34 1 3.4504 2.2678 5.9809 35 1 3.1398 3.4224 4.8006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086115833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:36 Heat of formation + Delta-G solvation = 43.682739 kcal Electronic energy + Delta-G solvation = -16483.803925 eV Core-core repulsion = 13902.818512 eV Total energy + Delta-G solvation = -2580.985413 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98780 -37.05238 -34.47756 -32.49946 -32.23891 -30.43663 -29.50633 -27.34081 -25.01945 -22.72162 -22.12250 -21.73575 -19.66340 -17.14950 -16.84248 -16.64370 -15.78620 -15.09506 -14.90663 -14.43683 -13.99389 -13.53669 -13.50748 -13.20765 -12.82992 -12.37097 -12.05305 -11.79276 -11.56378 -11.15965 -10.94361 -10.80218 -10.51298 -10.29156 -10.13924 -9.77526 -9.43325 -9.17910 -8.97529 -8.49198 -7.63938 -7.28893 -5.97037 -3.93407 1.53240 1.74075 3.32472 3.39807 3.41228 3.70162 4.16034 4.47887 4.80729 4.92538 5.10254 5.33058 5.34452 5.44201 5.60980 5.62042 5.81472 5.91891 6.02787 6.10073 6.23994 6.28643 6.46290 6.49192 6.59627 6.74383 6.86345 6.91742 7.01230 7.47463 7.65219 7.70230 7.96474 8.09821 8.63143 8.75347 9.17419 9.65013 11.16314 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028909 B = 0.006816 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.326892 B = 4106.810164 C = 4634.259239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.041 3.959 3 N -0.516 5.516 4 C 0.160 3.840 5 C -0.504 4.504 6 H 0.084 0.916 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.871 3.129 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.105 3.895 14 C 0.206 3.794 15 C -0.236 4.236 16 C -0.037 4.037 17 C -0.255 4.255 18 C 0.402 3.598 19 N -0.856 5.856 20 N -0.516 5.516 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.022 0.978 25 H 0.066 0.934 26 H -0.009 1.009 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.039 0.961 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.403 0.597 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.234 -12.790 10.982 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 N -0.240 5.240 4 C 0.034 3.966 5 C -0.543 4.543 6 H 0.102 0.898 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.023 4.023 14 C 0.066 3.934 15 C -0.259 4.259 16 C -0.063 4.063 17 C -0.280 4.280 18 C 0.164 3.836 19 N -0.399 5.399 20 N -0.234 5.234 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.009 0.991 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.124 0.876 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.232 0.768 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.770 -11.519 10.980 16.153 hybrid contribution 0.409 -1.351 -1.011 1.736 sum 3.180 -12.869 9.969 16.586 Atomic orbital electron populations 1.21729 0.95545 1.00062 1.02668 1.22170 0.96110 0.90917 0.99537 1.61897 1.15122 1.14187 1.32806 1.20266 0.95669 0.96003 0.84651 1.21100 1.48550 0.88648 0.95955 0.89756 1.24900 0.95152 0.94715 0.98592 1.69901 1.51107 1.03358 1.29686 0.86932 0.78692 0.79619 0.84933 1.20249 1.21274 1.19251 1.20940 0.90480 1.03253 0.87635 1.21035 0.89032 0.88471 0.94851 1.21675 1.09810 0.97397 0.97026 1.21169 0.94047 0.98711 0.92370 1.21203 1.13369 0.93287 1.00128 1.18409 0.89931 0.87364 0.87857 1.42196 1.79946 1.11656 1.06128 1.67077 1.19945 1.38079 0.98292 0.93516 0.92042 0.92655 0.95974 0.91571 0.99123 0.95383 0.92805 0.94349 0.87567 0.85637 0.85548 0.85944 0.76810 0.76597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.87 37.15 0.37 -2.02 16 2 C 0.04 0.74 5.54 -3.83 -0.02 0.71 16 3 N -0.52 -11.18 4.40 -237.52 -1.04 -12.23 16 4 C 0.16 3.94 3.67 -4.97 -0.02 3.92 16 5 C -0.50 -14.61 8.94 -34.44 -0.31 -14.91 16 6 H 0.08 2.71 7.97 -52.49 -0.42 2.30 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 9 Si 0.87 21.68 27.57 -169.99 -4.69 17.00 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.41 6.40 56.52 0.36 -6.05 16 13 C 0.11 2.12 5.13 -4.98 -0.03 2.09 16 14 C 0.21 3.73 5.70 -82.61 -0.47 3.26 16 15 C -0.24 -3.47 8.01 -39.42 -0.32 -3.78 16 16 C -0.04 -0.47 10.16 -39.33 -0.40 -0.87 16 17 C -0.25 -3.26 9.94 -39.23 -0.39 -3.65 16 18 C 0.40 6.13 7.75 -155.01 -1.20 4.93 16 19 N -0.86 -10.02 9.07 31.13 0.28 -9.74 16 20 N -0.52 -9.73 10.31 -8.67 -0.09 -9.82 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.05 0.97 6.77 -51.93 -0.35 0.62 16 24 H 0.02 0.38 8.05 -51.92 -0.42 -0.04 16 25 H 0.07 1.09 5.53 -51.93 -0.29 0.80 16 26 H -0.01 -0.22 6.75 -51.93 -0.35 -0.57 16 27 H 0.03 0.69 6.09 -51.93 -0.32 0.38 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 29 H 0.04 0.70 8.02 -51.93 -0.42 0.28 16 30 H 0.11 2.45 7.20 -51.92 -0.37 2.07 16 31 H 0.13 1.62 7.99 -52.49 -0.42 1.20 16 32 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 34 H 0.40 3.27 8.82 -40.82 -0.36 2.91 16 35 H 0.40 4.81 8.95 -40.82 -0.37 4.45 16 LS Contribution 288.95 15.07 4.35 4.35 Total: -1.00 -32.91 288.95 -8.23 -41.14 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.94 Total: 5.00 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.88 Total: -8.43 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.08 Total: -59.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.69 Total: 17.00 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.91 -8.23 -41.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086115833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.826 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds