Wall clock time and date at job start Sun Mar 29 2020 22:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46900 * 109.47534 * 2 1 4 4 C 1.46898 * 110.99793 * 287.85466 * 3 2 1 5 5 C 1.50707 * 109.47140 * 164.13691 * 4 3 2 6 6 H 1.07996 * 119.99544 * 354.83826 * 5 4 3 7 7 C 1.37873 * 120.00118 * 174.83989 * 5 4 3 8 8 N 1.31510 * 119.99793 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00020 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47218 * 89.99954 * 9 7 5 11 11 H 1.48500 * 109.46912 * 210.00102 * 9 7 5 12 12 H 1.48504 * 109.46824 * 329.99756 * 9 7 5 13 13 C 1.46898 * 110.99886 * 163.90011 * 3 2 1 14 14 C 1.50693 * 109.47578 * 293.95481 * 13 3 2 15 15 C 1.38066 * 119.57641 * 94.99660 * 14 13 3 16 16 C 1.38835 * 119.32732 * 180.02562 * 15 14 13 17 17 C 1.38333 * 118.51003 * 0.02562 * 16 15 14 18 18 C 1.39097 * 119.09818 * 359.97438 * 17 16 15 19 19 N 1.39008 * 119.70634 * 180.02562 * 18 17 16 20 20 N 1.31947 * 119.56993 * 274.73717 * 14 13 3 21 21 H 1.08996 * 109.47792 * 186.13206 * 1 2 3 22 22 H 1.09000 * 109.47009 * 306.14115 * 1 2 3 23 23 H 1.09006 * 109.46782 * 66.13154 * 1 2 3 24 24 H 1.09009 * 109.47291 * 239.99915 * 2 1 3 25 25 H 1.09001 * 109.47151 * 120.00269 * 2 1 3 26 26 H 1.09005 * 109.47331 * 284.13479 * 4 3 2 27 27 H 1.08996 * 109.47271 * 44.13320 * 4 3 2 28 28 H 0.97005 * 120.00334 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47255 * 53.95742 * 13 3 2 30 30 H 1.09010 * 109.47013 * 173.95006 * 13 3 2 31 31 H 1.08000 * 120.33059 * 359.97438 * 15 14 13 32 32 H 1.08008 * 120.74330 * 180.02562 * 16 15 14 33 33 H 1.08004 * 120.45295 * 180.02562 * 17 16 15 34 34 H 0.97002 * 119.99982 * 0.02562 * 19 18 17 35 35 H 0.97000 * 120.00023 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7988 2.0214 -1.3054 5 6 1.9417 3.5152 -1.1665 6 1 2.0905 3.9551 -0.1915 7 6 1.8824 4.3203 -2.2842 8 7 2.0066 5.6239 -2.1630 9 14 1.6256 3.5594 -3.9708 10 1 0.1714 3.4751 -4.2597 11 1 2.2866 4.4017 -4.9997 12 1 2.2147 2.1964 -3.9938 13 6 3.4374 1.4419 0.3803 14 6 3.5906 1.0075 1.8151 15 6 3.9047 -0.3065 2.0995 16 6 4.0440 -0.7012 3.4232 17 6 3.8611 0.2438 4.4168 18 6 3.5461 1.5502 4.0580 19 7 3.3600 2.5102 5.0460 20 7 3.4278 1.8891 2.7833 21 1 -0.3634 -1.0217 0.1098 22 1 -0.3633 0.6061 0.8299 23 1 -0.3633 0.4159 -0.9398 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.5343 1.6509 -2.0195 27 1 0.7960 1.7838 -1.6604 28 1 1.9652 6.1903 -2.9494 29 1 4.0134 0.7776 -0.2639 30 1 3.8028 2.4629 0.2687 31 1 4.0398 -1.0202 1.3003 32 1 4.2898 -1.7232 3.6717 33 1 3.9623 -0.0289 5.4569 34 1 3.4504 2.2678 5.9809 35 1 3.1398 3.4224 4.8006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086115833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:35 Heat of formation + Delta-G solvation = 18.775583 kcal Electronic energy + Delta-G solvation = -16484.883980 eV Core-core repulsion = 13902.818512 eV Total energy + Delta-G solvation = -2582.065469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.15595 -38.62169 -35.60719 -34.65523 -33.38960 -31.86130 -31.04403 -28.98044 -26.52641 -24.17319 -23.59500 -23.02246 -21.29520 -18.98451 -18.18130 -17.87351 -16.87179 -16.78681 -16.25105 -15.89734 -15.58108 -15.16472 -14.91162 -14.51509 -14.38689 -14.00701 -13.53394 -13.29819 -12.96957 -12.75057 -12.46943 -12.44940 -12.08984 -11.89216 -11.69088 -11.55189 -11.33946 -10.75739 -10.53251 -10.17787 -8.97259 -8.67186 -8.24869 -6.27843 0.39027 0.67894 1.35183 1.37454 1.47855 2.36354 2.70998 2.93845 3.07828 3.44854 3.65015 4.01537 4.22502 4.29754 4.37078 4.43168 4.56485 4.60893 4.72613 4.74136 4.87971 4.92886 5.03269 5.09775 5.18732 5.24651 5.36354 5.43912 5.60334 5.81027 6.04287 6.38994 6.50094 6.65984 6.72998 6.79721 7.35145 7.55257 8.92599 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028909 B = 0.006816 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.326892 B = 4106.810164 C = 4634.259239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.041 3.959 3 N -0.537 5.537 4 C 0.172 3.828 5 C -0.511 4.511 6 H 0.029 0.971 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.949 3.051 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.247 1.247 13 C 0.112 3.888 14 C 0.175 3.825 15 C -0.233 4.233 16 C -0.029 4.029 17 C -0.243 4.243 18 C 0.381 3.619 19 N -0.847 5.847 20 N -0.570 5.570 21 H 0.083 0.917 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.036 0.964 25 H 0.083 0.917 26 H -0.006 1.006 27 H 0.034 0.966 28 H 0.266 0.734 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.146 0.854 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.420 0.580 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -16.481 11.297 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 N -0.262 5.262 4 C 0.045 3.955 5 C -0.550 4.550 6 H 0.047 0.953 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.772 3.228 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.171 1.171 13 C -0.017 4.017 14 C 0.037 3.963 15 C -0.256 4.256 16 C -0.055 4.055 17 C -0.268 4.268 18 C 0.143 3.857 19 N -0.392 5.392 20 N -0.290 5.290 21 H 0.102 0.898 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.012 0.988 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.188 0.812 33 H 0.178 0.822 34 H 0.253 0.747 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.810 -15.236 11.337 19.198 hybrid contribution 0.435 -0.161 -0.904 1.016 sum 3.244 -15.397 10.433 18.880 Atomic orbital electron populations 1.21724 0.94778 1.01940 1.01242 1.22271 0.96689 0.88651 1.00987 1.61766 1.16525 1.16953 1.30962 1.19991 0.95802 0.93137 0.86547 1.21270 1.48368 0.91501 0.93846 0.95259 1.25895 0.94626 0.95052 1.03607 1.70077 1.52615 1.05288 1.31287 0.85695 0.79275 0.79410 0.78431 1.18939 1.20743 1.17099 1.20765 0.89714 1.00833 0.90367 1.20755 0.92052 0.90143 0.93344 1.21826 1.08916 0.95894 0.98952 1.21667 0.92191 1.00594 0.91042 1.21649 1.10974 0.91925 1.02242 1.18815 0.90523 0.89192 0.87197 1.42197 1.79264 1.11078 1.06615 1.66893 1.22025 1.39874 1.00174 0.89796 0.93858 0.93810 0.94546 0.89824 0.98835 0.94802 0.92548 0.92666 0.92501 0.83673 0.81158 0.82248 0.74745 0.77049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.87 71.98 0.71 -3.71 16 2 C 0.04 1.41 5.54 86.30 0.48 1.89 16 3 N -0.54 -23.70 4.40 -905.37 -3.98 -27.68 16 4 C 0.17 8.59 3.67 85.56 0.31 8.90 16 5 C -0.51 -31.20 8.94 25.60 0.23 -30.97 16 6 H 0.03 2.05 7.97 -2.91 -0.02 2.02 16 7 C 0.00 0.29 5.47 84.65 0.46 0.75 16 8 N -0.95 -61.80 13.96 21.44 0.30 -61.50 16 9 Si 0.95 45.11 27.57 68.60 1.89 47.01 16 10 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.25 -10.87 6.40 99.48 0.64 -10.23 16 13 C 0.11 4.66 5.13 85.56 0.44 5.10 16 14 C 0.18 6.39 5.70 42.50 0.24 6.63 16 15 C -0.23 -6.27 8.01 22.37 0.18 -6.09 16 16 C -0.03 -0.62 10.16 22.44 0.23 -0.39 16 17 C -0.24 -5.41 9.94 22.50 0.22 -5.19 16 18 C 0.38 11.32 7.75 133.04 1.03 12.36 16 19 N -0.85 -19.37 9.07 -55.44 -0.50 -19.87 16 20 N -0.57 -22.17 10.31 -181.34 -1.87 -24.04 16 21 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 23 H 0.04 1.47 6.77 -2.38 -0.02 1.45 16 24 H 0.04 1.15 8.05 -2.38 -0.02 1.13 16 25 H 0.08 2.55 5.53 -2.39 -0.01 2.54 16 26 H -0.01 -0.29 6.75 -2.38 -0.02 -0.31 16 27 H 0.03 1.65 6.09 -2.39 -0.01 1.63 16 28 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 29 H 0.06 2.03 8.02 -2.39 -0.02 2.01 16 30 H 0.06 2.87 7.20 -2.38 -0.02 2.85 16 31 H 0.15 3.23 7.99 -2.91 -0.02 3.21 16 32 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.42 6.12 8.82 -92.71 -0.82 5.31 16 35 H 0.40 9.84 8.95 -92.71 -0.83 9.01 16 Total: -1.00 -76.56 288.95 -0.24 -76.80 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -0.62 Total: 20.00 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 4.54 Total: -10.71 kcal Atomic # 7 Polarization: -127.05 SS G_CDS: -6.05 Total: -133.10 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.89 Total: 47.01 kcal Total: -76.56 -0.24 -76.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086115833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.577 kcal (2) G-P(sol) polarization free energy of solvation -76.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds