Wall clock time and date at job start Sun Mar 29 2020 21:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48498 * 109.46826 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46902 * 299.99781 * 3 2 1 6 6 H 1.48493 * 109.47046 * 59.99942 * 3 2 1 7 7 C 1.37873 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00319 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47344 * 179.11512 * 9 7 2 11 11 C 1.46905 * 110.99875 * 288.70454 * 10 9 7 12 12 C 1.50698 * 109.47126 * 170.00081 * 11 10 9 13 13 C 1.35314 * 126.12738 * 94.99747 * 12 11 10 14 14 C 1.39869 * 107.92125 * 179.97438 * 13 12 11 15 15 N 1.30834 * 108.20424 * 0.02562 * 14 13 12 16 16 N 1.34946 * 126.12600 * 274.68766 * 12 11 10 17 17 H 0.97000 * 126.03690 * 0.04092 * 16 12 11 18 18 C 1.46899 * 110.99866 * 164.75099 * 10 9 7 19 19 C 1.52993 * 109.47010 * 288.53608 * 18 10 9 20 20 C 1.53003 * 117.50153 * 116.46224 * 19 18 10 21 21 C 1.53004 * 117.49847 * 185.12124 * 19 18 10 22 22 H 0.97001 * 119.99983 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47208 * 59.11474 * 9 7 2 24 24 H 1.08998 * 109.47035 * 299.11938 * 9 7 2 25 25 H 1.09007 * 109.47061 * 289.99579 * 11 10 9 26 26 H 1.08994 * 109.47082 * 49.99687 * 11 10 9 27 27 H 1.08004 * 126.03987 * 359.94320 * 13 12 11 28 28 H 1.08009 * 125.89872 * 180.02562 * 14 13 12 29 29 H 1.09000 * 109.47071 * 168.53673 * 18 10 9 30 30 H 1.08994 * 109.47599 * 48.53833 * 18 10 9 31 31 H 1.09003 * 115.55260 * 330.79138 * 19 18 10 32 32 H 1.08994 * 117.50121 * 215.00436 * 20 19 18 33 33 H 1.09002 * 117.49398 * 0.02562 * 20 19 18 34 34 H 1.08994 * 117.50068 * 359.97438 * 21 19 18 35 35 H 1.09002 * 117.49641 * 144.99599 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2056 -3.6156 -0.0202 11 6 2.8650 -3.7201 -1.3288 12 6 4.0019 -4.7055 -1.2411 13 6 3.9463 -6.0184 -1.5635 14 6 5.2116 -6.5706 -1.3393 15 7 5.9985 -5.6233 -0.8975 16 7 5.2592 -4.4352 -0.8325 17 1 5.5917 -3.5713 -0.5423 18 6 1.5466 -4.8782 0.3396 19 6 1.2103 -4.8707 1.8321 20 6 -0.2678 -4.9251 2.2236 21 6 0.6249 -6.1512 2.4308 22 1 -0.4850 0.8401 -0.0004 23 1 0.6129 -2.5503 -0.8816 24 1 0.6360 -2.5636 0.8981 25 1 2.1448 -4.0616 -2.0724 26 1 3.2521 -2.7436 -1.6196 27 1 3.0781 -6.5468 -1.9290 28 1 5.4909 -7.6011 -1.5026 29 1 2.2147 -5.7116 0.1219 30 1 0.6294 -4.9872 -0.2390 31 1 1.8761 -4.2796 2.4611 32 1 -0.5744 -4.3698 3.1099 33 1 -1.0006 -4.9667 1.4177 34 1 0.4789 -6.9989 1.7614 35 1 0.9055 -6.4026 3.4537 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091597.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:58 Heat of formation + Delta-G solvation = 98.137438 kcal Electronic energy + Delta-G solvation = -16520.001050 eV Core-core repulsion = 13941.376970 eV Total energy + Delta-G solvation = -2578.624080 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87456 -37.76192 -35.52333 -32.67437 -31.24839 -30.16580 -27.67688 -26.50962 -23.87469 -22.00450 -21.47689 -21.16376 -19.99084 -19.62625 -16.97098 -16.44289 -15.36412 -14.98616 -14.48484 -14.26722 -13.96776 -13.71961 -13.40274 -12.98648 -12.85517 -12.21734 -12.04921 -11.43138 -11.19018 -11.04916 -10.81574 -10.73062 -10.69301 -10.39663 -10.07631 -9.89138 -9.44728 -9.28146 -9.19075 -8.49757 -8.30648 -7.39814 -6.08953 -4.11049 2.20663 3.07906 3.23704 3.25739 3.33965 3.36963 4.20860 4.36736 4.79430 5.05404 5.15518 5.26851 5.28535 5.34532 5.55153 5.63151 5.90325 5.94614 5.94932 5.97219 6.11053 6.22880 6.26165 6.30386 6.45557 6.49406 6.76461 6.90514 7.19818 7.27537 7.59318 7.73327 7.96266 8.02657 8.08711 8.44539 8.96104 9.53618 11.01433 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.008509 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.853388 B = 3289.726853 C = 4551.169260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.061 0.939 9 C 0.193 3.807 10 N -0.530 5.530 11 C 0.114 3.886 12 C 0.123 3.877 13 C -0.287 4.287 14 C 0.045 3.955 15 N -0.309 5.309 16 N -0.461 5.461 17 H 0.439 0.561 18 C 0.080 3.920 19 C -0.128 4.128 20 C -0.179 4.179 21 C -0.188 4.188 22 H 0.261 0.739 23 H -0.007 1.007 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.141 0.859 28 H 0.177 0.823 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 -10.706 -0.893 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.255 5.255 11 C -0.016 4.016 12 C -0.008 4.008 13 C -0.317 4.317 14 C -0.141 4.141 15 N -0.132 5.132 16 N -0.169 5.169 17 H 0.283 0.717 18 C -0.048 4.048 19 C -0.147 4.147 20 C -0.216 4.216 21 C -0.226 4.226 22 H 0.071 0.929 23 H 0.011 0.989 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.158 0.842 28 H 0.194 0.806 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.996 -10.209 -0.156 11.367 hybrid contribution -1.005 1.008 -0.648 1.564 sum 3.990 -9.202 -0.805 10.062 Atomic orbital electron populations 1.69960 1.06023 1.26712 1.50786 1.24970 0.94836 0.99234 0.95404 0.86491 0.80018 0.83616 0.77579 1.19753 1.21094 1.20996 1.21171 0.93378 0.90002 1.50327 0.92064 1.19792 0.89783 0.86772 0.96804 1.62095 1.33437 1.04063 1.25872 1.20652 0.91447 0.97088 0.92368 1.21345 0.87349 0.96125 0.95970 1.21199 0.99488 0.93840 1.17199 1.23713 0.92362 0.98992 0.99061 1.77240 1.20194 0.91260 1.24470 1.46339 1.07700 1.10553 1.52351 0.71671 1.21695 0.96855 0.93373 0.92890 1.22212 0.95973 0.99446 0.97027 1.22985 0.94225 1.01136 1.03269 1.22940 1.05894 0.92268 1.01483 0.92922 0.98903 0.94148 0.93115 0.88438 0.84166 0.80603 0.90954 0.95570 0.87306 0.89211 0.89181 0.89399 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -13.56 8.43 -34.44 -0.29 -13.85 16 8 H 0.06 1.60 7.57 -52.48 -0.40 1.20 16 9 C 0.19 4.73 4.58 -4.98 -0.02 4.70 16 10 N -0.53 -10.64 4.41 -237.52 -1.05 -11.68 16 11 C 0.11 2.04 5.36 -4.97 -0.03 2.01 16 12 C 0.12 1.99 6.00 -82.27 -0.49 1.50 16 13 C -0.29 -4.19 9.31 -40.01 -0.37 -4.56 16 14 C 0.04 0.62 12.02 -17.37 -0.21 0.41 16 15 N -0.31 -4.94 12.70 30.63 0.39 -4.55 16 16 N -0.46 -7.34 7.36 33.47 0.25 -7.09 16 17 H 0.44 6.35 8.96 -182.60 -1.64 4.72 16 18 C 0.08 1.41 5.12 -3.83 -0.02 1.39 16 19 C -0.13 -2.18 4.94 -90.62 -0.45 -2.63 16 20 C -0.18 -2.82 10.08 -26.69 -0.27 -3.09 16 21 C -0.19 -2.62 10.25 -26.69 -0.27 -2.90 16 22 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 23 H -0.01 -0.18 8.06 -51.93 -0.42 -0.60 16 24 H 0.04 1.07 7.08 -51.93 -0.37 0.70 16 25 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 26 H 0.10 1.85 7.07 -51.93 -0.37 1.48 16 27 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 28 H 0.18 1.80 8.06 -52.48 -0.42 1.38 16 29 H 0.07 1.19 5.84 -51.93 -0.30 0.89 16 30 H 0.03 0.47 7.79 -51.93 -0.40 0.06 16 31 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 295.68 15.07 4.46 4.46 Total: -1.00 -29.28 295.68 -9.17 -38.45 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.41 Total: 5.05 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -2.52 Total: -15.53 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.32 Total: -48.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.28 -9.17 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091597.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.583 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds