Wall clock time and date at job start Sun Mar 29 2020 21:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48498 * 109.46826 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46902 * 299.99781 * 3 2 1 6 6 H 1.48493 * 109.47046 * 59.99942 * 3 2 1 7 7 C 1.37873 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00319 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47344 * 179.11512 * 9 7 2 11 11 C 1.46905 * 110.99875 * 288.70454 * 10 9 7 12 12 C 1.50698 * 109.47126 * 170.00081 * 11 10 9 13 13 C 1.35314 * 126.12738 * 94.99747 * 12 11 10 14 14 C 1.39869 * 107.92125 * 179.97438 * 13 12 11 15 15 N 1.30834 * 108.20424 * 0.02562 * 14 13 12 16 16 N 1.34946 * 126.12600 * 274.68766 * 12 11 10 17 17 H 0.97000 * 126.03690 * 0.04092 * 16 12 11 18 18 C 1.46899 * 110.99866 * 164.75099 * 10 9 7 19 19 C 1.52993 * 109.47010 * 288.53608 * 18 10 9 20 20 C 1.53003 * 117.50153 * 116.46224 * 19 18 10 21 21 C 1.53004 * 117.49847 * 185.12124 * 19 18 10 22 22 H 0.97001 * 119.99983 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47208 * 59.11474 * 9 7 2 24 24 H 1.08998 * 109.47035 * 299.11938 * 9 7 2 25 25 H 1.09007 * 109.47061 * 289.99579 * 11 10 9 26 26 H 1.08994 * 109.47082 * 49.99687 * 11 10 9 27 27 H 1.08004 * 126.03987 * 359.94320 * 13 12 11 28 28 H 1.08009 * 125.89872 * 180.02562 * 14 13 12 29 29 H 1.09000 * 109.47071 * 168.53673 * 18 10 9 30 30 H 1.08994 * 109.47599 * 48.53833 * 18 10 9 31 31 H 1.09003 * 115.55260 * 330.79138 * 19 18 10 32 32 H 1.08994 * 117.50121 * 215.00436 * 20 19 18 33 33 H 1.09002 * 117.49398 * 0.02562 * 20 19 18 34 34 H 1.08994 * 117.50068 * 359.97438 * 21 19 18 35 35 H 1.09002 * 117.49641 * 144.99599 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2056 -3.6156 -0.0202 11 6 2.8650 -3.7201 -1.3288 12 6 4.0019 -4.7055 -1.2411 13 6 3.9463 -6.0184 -1.5635 14 6 5.2116 -6.5706 -1.3393 15 7 5.9985 -5.6233 -0.8975 16 7 5.2592 -4.4352 -0.8325 17 1 5.5917 -3.5713 -0.5423 18 6 1.5466 -4.8782 0.3396 19 6 1.2103 -4.8707 1.8321 20 6 -0.2678 -4.9251 2.2236 21 6 0.6249 -6.1512 2.4308 22 1 -0.4850 0.8401 -0.0004 23 1 0.6129 -2.5503 -0.8816 24 1 0.6360 -2.5636 0.8981 25 1 2.1448 -4.0616 -2.0724 26 1 3.2521 -2.7436 -1.6196 27 1 3.0781 -6.5468 -1.9290 28 1 5.4909 -7.6011 -1.5026 29 1 2.2147 -5.7116 0.1219 30 1 0.6294 -4.9872 -0.2390 31 1 1.8761 -4.2796 2.4611 32 1 -0.5744 -4.3698 3.1099 33 1 -1.0006 -4.9667 1.4177 34 1 0.4789 -6.9989 1.7614 35 1 0.9055 -6.4026 3.4537 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091597.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:57 Heat of formation + Delta-G solvation = 79.418138 kcal Electronic energy + Delta-G solvation = -16520.812780 eV Core-core repulsion = 13941.376970 eV Total energy + Delta-G solvation = -2579.435810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07082 -39.19477 -36.98127 -34.68977 -32.50320 -31.47620 -29.47091 -27.96261 -25.64931 -23.20392 -23.01951 -22.42281 -21.23273 -21.04493 -18.58183 -18.17858 -16.92654 -16.48643 -16.10270 -15.68376 -15.28602 -14.99487 -14.78126 -14.31932 -14.27469 -13.97994 -13.56132 -13.24073 -12.77412 -12.59508 -12.40201 -12.32977 -12.23728 -11.91496 -11.60126 -11.38559 -11.09540 -10.72548 -10.57537 -10.43939 -9.52891 -9.05122 -8.18951 -6.28251 0.98031 1.39795 1.41569 1.53090 1.95237 2.06317 2.39894 2.95242 3.14115 3.32502 3.78328 3.99979 4.06724 4.08825 4.23680 4.26637 4.55328 4.65721 4.77142 4.80162 4.80836 4.83758 4.90229 5.04928 5.21343 5.22769 5.28703 5.36651 5.42494 5.67212 5.82339 6.08222 6.29241 6.42030 6.60404 6.82153 6.87685 7.41270 8.91669 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.008509 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.853388 B = 3289.726853 C = 4551.169260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.212 3.788 10 N -0.535 5.535 11 C 0.120 3.880 12 C 0.108 3.892 13 C -0.280 4.280 14 C 0.051 3.949 15 N -0.329 5.329 16 N -0.469 5.469 17 H 0.440 0.560 18 C 0.086 3.914 19 C -0.155 4.155 20 C -0.190 4.190 21 C -0.152 4.152 22 H 0.263 0.737 23 H -0.034 1.034 24 H 0.015 0.985 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.161 0.839 28 H 0.216 0.784 29 H 0.089 0.911 30 H 0.023 0.977 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.605 -12.211 -0.975 13.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C 0.086 3.914 10 N -0.259 5.259 11 C -0.009 4.009 12 C -0.023 4.023 13 C -0.310 4.310 14 C -0.135 4.135 15 N -0.152 5.152 16 N -0.178 5.178 17 H 0.285 0.715 18 C -0.042 4.042 19 C -0.174 4.174 20 C -0.227 4.227 21 C -0.189 4.189 22 H 0.072 0.928 23 H -0.017 1.017 24 H 0.033 0.967 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.178 0.822 28 H 0.232 0.768 29 H 0.107 0.893 30 H 0.041 0.959 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.997 -11.731 -0.241 13.177 hybrid contribution -1.309 1.395 -0.632 2.015 sum 4.688 -10.336 -0.872 11.383 Atomic orbital electron populations 1.70081 1.07589 1.27660 1.51917 1.25812 0.95625 1.02823 0.95051 0.85446 0.79089 0.79203 0.77551 1.18752 1.20570 1.20807 1.21494 0.93562 0.91111 1.49691 0.91987 1.19371 0.89717 0.88066 0.94213 1.61996 1.32401 1.04154 1.27399 1.20504 0.92090 0.97031 0.91324 1.21123 0.87005 0.96476 0.97701 1.21496 1.00530 0.93050 1.15943 1.24358 0.91565 1.00233 0.97315 1.77240 1.20981 0.91616 1.25339 1.46407 1.07661 1.10912 1.52785 0.71526 1.21706 0.96789 0.92399 0.93272 1.22149 0.96432 1.02339 0.96474 1.23015 0.93516 1.03001 1.03179 1.23032 1.02157 0.91255 1.02485 0.92803 1.01656 0.96673 0.92510 0.90171 0.82158 0.76793 0.89281 0.95911 0.89541 0.89399 0.89526 0.87410 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 2 C 0.01 0.28 5.46 84.65 0.46 0.75 16 3 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.52 -28.25 8.43 25.60 0.22 -28.04 16 8 H 0.06 3.29 7.57 -2.91 -0.02 3.26 16 9 C 0.21 10.76 4.58 85.56 0.39 11.15 16 10 N -0.53 -21.79 4.41 -905.39 -3.99 -25.78 16 11 C 0.12 4.30 5.36 85.56 0.46 4.76 16 12 C 0.11 3.35 6.00 41.40 0.25 3.60 16 13 C -0.28 -7.41 9.31 21.99 0.20 -7.20 16 14 C 0.05 1.26 12.02 85.24 1.02 2.28 16 15 N -0.33 -9.88 12.70 -57.02 -0.72 -10.60 16 16 N -0.47 -14.50 7.36 -48.01 -0.35 -14.86 16 17 H 0.44 12.71 8.96 -213.32 -1.91 10.80 16 18 C 0.09 2.99 5.12 86.30 0.44 3.43 16 19 C -0.16 -5.24 4.94 -10.79 -0.05 -5.29 16 20 C -0.19 -5.92 10.08 30.62 0.31 -5.61 16 21 C -0.15 -3.87 10.25 30.62 0.31 -3.56 16 22 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 23 H -0.03 -1.89 8.06 -2.39 -0.02 -1.91 16 24 H 0.02 0.84 7.08 -2.39 -0.02 0.82 16 25 H 0.06 1.95 8.12 -2.38 -0.02 1.93 16 26 H 0.08 3.12 7.07 -2.39 -0.02 3.10 16 27 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 28 H 0.22 3.42 8.06 -2.91 -0.02 3.39 16 29 H 0.09 2.77 5.84 -2.39 -0.01 2.76 16 30 H 0.02 0.80 7.79 -2.39 -0.02 0.79 16 31 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.09 2.73 8.03 -2.39 -0.02 2.71 16 34 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -63.09 295.68 0.43 -62.66 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.83 Total: 21.47 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 4.02 Total: -23.72 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -4.78 Total: -105.77 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -63.09 0.43 -62.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091597.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.075 kcal (2) G-P(sol) polarization free energy of solvation -63.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds