Wall clock time and date at job start Sun Mar 29 2020 22:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00142 * 2 1 4 4 C 1.39000 * 120.00199 * 179.97438 * 2 1 3 5 5 C 1.39140 * 119.70721 * 4.97603 * 4 2 1 6 6 C 1.38293 * 119.10250 * 179.97438 * 5 4 2 7 7 C 1.38885 * 118.50345 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.33548 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47125 * 90.00109 * 8 7 6 10 10 C 1.46501 * 119.99729 * 269.99801 * 9 8 7 11 11 C 1.36937 * 120.00332 * 90.00067 * 9 8 7 12 12 H 1.07995 * 119.99896 * 20.38466 * 11 9 8 13 13 C 1.38820 * 119.99700 * 200.38815 * 11 9 8 14 14 N 1.31610 * 120.00283 * 14.97123 * 13 11 9 15 15 Si 1.86798 * 119.99465 * 194.96788 * 13 11 9 16 16 H 1.48503 * 109.47005 * 85.00544 * 15 13 11 17 17 H 1.48501 * 109.47079 * 205.00271 * 15 13 11 18 18 H 1.48500 * 109.47256 * 325.00577 * 15 13 11 19 19 C 1.38018 * 119.32939 * 0.02562 * 7 6 5 20 20 N 1.31973 * 120.85653 * 359.97438 * 19 7 6 21 21 H 1.09005 * 109.46973 * 269.99498 * 1 2 3 22 22 H 1.08992 * 109.47382 * 30.00022 * 1 2 3 23 23 H 1.09002 * 109.46917 * 150.00640 * 1 2 3 24 24 H 1.09003 * 109.47062 * 239.99897 * 3 2 1 25 25 H 1.08996 * 109.46986 * 359.97438 * 3 2 1 26 26 H 1.09000 * 109.47367 * 119.99530 * 3 2 1 27 27 H 1.08006 * 120.45188 * 359.97438 * 5 4 2 28 28 H 1.08004 * 120.75111 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47462 * 209.99318 * 8 7 6 30 30 H 1.09000 * 109.47669 * 330.00120 * 8 7 6 31 31 H 1.09003 * 109.47372 * 95.09826 * 10 9 8 32 32 H 1.08999 * 109.47534 * 215.09505 * 10 9 8 33 33 H 1.08999 * 109.47493 * 335.09354 * 10 9 8 34 34 H 0.97001 * 120.00183 * 180.02562 * 14 13 11 35 35 H 1.08008 * 119.57449 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1600 -1.2037 0.0005 5 6 1.4621 -2.4030 -0.1038 6 6 2.1662 -3.5932 -0.1025 7 6 3.5501 -3.5445 0.0040 8 6 4.3584 -4.8164 0.0089 9 7 4.7240 -5.1680 -1.3654 10 6 3.8402 -6.0221 -2.1628 11 6 5.8918 -4.6985 -1.9048 12 1 6.6880 -4.3608 -1.2579 13 6 6.0523 -4.6566 -3.2830 14 7 5.0059 -4.7810 -4.0715 15 14 7.7535 -4.4234 -4.0185 16 1 8.4325 -5.7400 -4.1224 17 1 7.6300 -3.8221 -5.3707 18 1 8.5503 -3.5229 -3.1471 19 6 4.1777 -2.3194 0.1052 20 7 3.4801 -1.1992 0.1014 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8901 -0.5137 24 1 2.8242 1.3264 -0.8900 25 1 1.4892 2.0971 -0.0005 26 1 2.8241 1.3265 0.8900 27 1 0.3851 -2.4043 -0.1846 28 1 1.6516 -4.5394 -0.1825 29 1 5.2629 -4.6699 0.5993 30 1 3.7665 -5.6214 0.4447 31 1 3.1871 -5.3990 -2.7739 32 1 4.4401 -6.6627 -2.8092 33 1 3.2358 -6.6400 -1.4988 34 1 5.1180 -4.7521 -5.0346 35 1 5.2538 -2.2769 0.1877 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119852742.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:47 Heat of formation + Delta-G solvation = 75.781541 kcal Electronic energy + Delta-G solvation = -16540.482135 eV Core-core repulsion = 13960.888630 eV Total energy + Delta-G solvation = -2579.593505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.68490 -36.55234 -35.18228 -32.20264 -31.25272 -29.77716 -28.03292 -26.41327 -25.73163 -23.86754 -22.59769 -21.27633 -20.11277 -17.05920 -16.70920 -15.97078 -15.05214 -14.99957 -14.42159 -14.13442 -13.76269 -13.59247 -13.18432 -12.68074 -12.49057 -12.42745 -12.05281 -12.03206 -11.78538 -11.35800 -10.86676 -10.73326 -10.62665 -10.37051 -9.97704 -9.86633 -9.28953 -9.07560 -8.79399 -8.49292 -7.06200 -6.71798 -5.69720 -3.11551 1.95171 2.14318 3.26168 3.41828 3.47595 3.48784 4.48973 4.62475 4.96188 5.15188 5.34239 5.43730 5.46187 5.58011 5.61113 5.73180 5.79586 5.82533 5.89192 5.96008 6.08150 6.14707 6.51321 6.65605 6.70367 6.76837 7.07217 7.23582 7.35834 7.40007 7.74822 7.81854 7.84025 8.41123 8.77528 9.25772 9.89611 10.37888 11.35219 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029276 B = 0.006769 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.173636 B = 4135.664128 C = 4521.717201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.629 5.629 3 C 0.113 3.887 4 C 0.378 3.622 5 C -0.240 4.240 6 C -0.033 4.033 7 C -0.180 4.180 8 C 0.191 3.809 9 N -0.592 5.592 10 C 0.163 3.837 11 C -0.251 4.251 12 H 0.071 0.929 13 C 0.001 3.999 14 N -0.905 5.905 15 Si 0.904 3.096 16 H -0.287 1.287 17 H -0.292 1.292 18 H -0.279 1.279 19 C 0.156 3.844 20 N -0.542 5.542 21 H 0.044 0.956 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.028 0.972 32 H 0.044 0.956 33 H -0.002 1.002 34 H 0.252 0.748 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.456 6.229 8.566 13.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.347 5.347 3 C -0.031 4.031 4 C 0.145 3.855 5 C -0.265 4.265 6 C -0.060 4.060 7 C -0.188 4.188 8 C 0.064 3.936 9 N -0.313 5.313 10 C 0.019 3.981 11 C -0.381 4.381 12 H 0.089 0.911 13 C -0.197 4.197 14 N -0.549 5.549 15 Si 0.734 3.266 16 H -0.214 1.214 17 H -0.219 1.219 18 H -0.205 1.205 19 C -0.001 4.001 20 N -0.258 5.258 21 H 0.062 0.938 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.016 0.984 34 H 0.062 0.938 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.094 7.131 8.420 13.684 hybrid contribution 0.309 -0.448 -0.867 1.023 sum -7.785 6.684 7.553 12.741 Atomic orbital electron populations 1.21592 0.79283 1.02538 1.00758 1.45970 1.04464 1.03081 1.81178 1.21361 0.96036 0.83869 1.01806 1.18159 0.88681 0.85304 0.93393 1.21266 1.00090 0.92181 1.12918 1.21103 0.93839 0.97098 0.93966 1.21822 0.94592 0.99232 1.03116 1.19773 0.95495 0.90215 0.88156 1.44165 1.22210 1.54654 1.10304 1.20800 0.92823 0.92181 0.92323 1.19232 0.90803 1.38165 0.89896 0.91118 1.24999 0.97148 1.00971 0.96630 1.70089 1.27389 1.54445 1.03023 0.86276 0.84104 0.77791 0.78429 1.21445 1.21859 1.20472 1.22173 0.99014 0.86359 0.92567 1.67081 1.06028 1.32325 1.20416 0.93755 0.91702 0.91313 0.92995 0.92056 0.92887 0.86131 0.86010 0.92829 0.93571 0.95402 0.93747 0.98372 0.93803 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 10.25 59.84 0.61 1.72 16 2 N -0.63 -9.44 3.39 -189.67 -0.64 -10.09 16 3 C 0.11 1.47 10.19 59.85 0.61 2.08 16 4 C 0.38 6.95 7.37 -155.03 -1.14 5.81 16 5 C -0.24 -4.18 9.27 -39.23 -0.36 -4.54 16 6 C -0.03 -0.61 9.85 -39.32 -0.39 -1.00 16 7 C -0.18 -3.66 5.48 -104.46 -0.57 -4.23 16 8 C 0.19 3.95 5.85 -5.19 -0.03 3.92 16 9 N -0.59 -14.93 2.91 -182.50 -0.53 -15.46 16 10 C 0.16 4.06 9.02 59.85 0.54 4.60 16 11 C -0.25 -6.91 9.68 -15.06 -0.15 -7.05 16 12 H 0.07 1.88 7.86 -52.49 -0.41 1.47 16 13 C 0.00 0.03 5.06 -17.43 -0.09 -0.06 16 14 N -0.90 -26.89 10.67 55.49 0.59 -26.30 16 15 Si 0.90 22.21 29.58 -169.99 -5.03 17.18 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.16 3.22 10.85 -17.57 -0.19 3.03 16 20 N -0.54 -10.98 9.57 -12.44 -0.12 -11.10 16 21 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 23 H 0.07 0.73 5.98 -51.93 -0.31 0.42 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.59 7.79 -51.93 -0.40 0.19 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.12 1.74 6.03 -52.48 -0.32 1.42 16 28 H 0.12 2.03 8.06 -52.48 -0.42 1.61 16 29 H 0.05 1.05 7.98 -51.93 -0.41 0.64 16 30 H 0.05 0.85 7.81 -51.93 -0.41 0.45 16 31 H 0.03 0.76 7.40 -51.93 -0.38 0.37 16 32 H 0.04 1.18 7.21 -51.93 -0.37 0.81 16 33 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 34 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.15 2.93 8.06 -52.48 -0.42 2.51 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -32.16 292.98 -7.56 -39.72 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -5.09 Total: -2.64 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.16 Total: 4.27 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.70 Total: -62.95 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.16 -7.56 -39.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119852742.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.504 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds