Wall clock time and date at job start Sun Mar 29 2020 22:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00142 * 2 1 4 4 C 1.39000 * 120.00199 * 179.97438 * 2 1 3 5 5 C 1.39140 * 119.70721 * 4.97603 * 4 2 1 6 6 C 1.38293 * 119.10250 * 179.97438 * 5 4 2 7 7 C 1.38885 * 118.50345 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.33548 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47125 * 90.00109 * 8 7 6 10 10 C 1.46501 * 119.99729 * 269.99801 * 9 8 7 11 11 C 1.36937 * 120.00332 * 90.00067 * 9 8 7 12 12 H 1.07995 * 119.99896 * 20.38466 * 11 9 8 13 13 C 1.38820 * 119.99700 * 200.38815 * 11 9 8 14 14 N 1.31610 * 120.00283 * 14.97123 * 13 11 9 15 15 Si 1.86798 * 119.99465 * 194.96788 * 13 11 9 16 16 H 1.48503 * 109.47005 * 85.00544 * 15 13 11 17 17 H 1.48501 * 109.47079 * 205.00271 * 15 13 11 18 18 H 1.48500 * 109.47256 * 325.00577 * 15 13 11 19 19 C 1.38018 * 119.32939 * 0.02562 * 7 6 5 20 20 N 1.31973 * 120.85653 * 359.97438 * 19 7 6 21 21 H 1.09005 * 109.46973 * 269.99498 * 1 2 3 22 22 H 1.08992 * 109.47382 * 30.00022 * 1 2 3 23 23 H 1.09002 * 109.46917 * 150.00640 * 1 2 3 24 24 H 1.09003 * 109.47062 * 239.99897 * 3 2 1 25 25 H 1.08996 * 109.46986 * 359.97438 * 3 2 1 26 26 H 1.09000 * 109.47367 * 119.99530 * 3 2 1 27 27 H 1.08006 * 120.45188 * 359.97438 * 5 4 2 28 28 H 1.08004 * 120.75111 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47462 * 209.99318 * 8 7 6 30 30 H 1.09000 * 109.47669 * 330.00120 * 8 7 6 31 31 H 1.09003 * 109.47372 * 95.09826 * 10 9 8 32 32 H 1.08999 * 109.47534 * 215.09505 * 10 9 8 33 33 H 1.08999 * 109.47493 * 335.09354 * 10 9 8 34 34 H 0.97001 * 120.00183 * 180.02562 * 14 13 11 35 35 H 1.08008 * 119.57449 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1600 -1.2037 0.0005 5 6 1.4621 -2.4030 -0.1038 6 6 2.1662 -3.5932 -0.1025 7 6 3.5501 -3.5445 0.0040 8 6 4.3584 -4.8164 0.0089 9 7 4.7240 -5.1680 -1.3654 10 6 3.8402 -6.0221 -2.1628 11 6 5.8918 -4.6985 -1.9048 12 1 6.6880 -4.3608 -1.2579 13 6 6.0523 -4.6566 -3.2830 14 7 5.0059 -4.7810 -4.0715 15 14 7.7535 -4.4234 -4.0185 16 1 8.4325 -5.7400 -4.1224 17 1 7.6300 -3.8221 -5.3707 18 1 8.5503 -3.5229 -3.1471 19 6 4.1777 -2.3194 0.1052 20 7 3.4801 -1.1992 0.1014 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8901 -0.5137 24 1 2.8242 1.3264 -0.8900 25 1 1.4892 2.0971 -0.0005 26 1 2.8241 1.3265 0.8900 27 1 0.3851 -2.4043 -0.1846 28 1 1.6516 -4.5394 -0.1825 29 1 5.2629 -4.6699 0.5993 30 1 3.7665 -5.6214 0.4447 31 1 3.1871 -5.3990 -2.7739 32 1 4.4401 -6.6627 -2.8092 33 1 3.2358 -6.6400 -1.4988 34 1 5.1180 -4.7521 -5.0346 35 1 5.2538 -2.2769 0.1877 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119852742.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:47 Heat of formation + Delta-G solvation = 56.588566 kcal Electronic energy + Delta-G solvation = -16541.314404 eV Core-core repulsion = 13960.888630 eV Total energy + Delta-G solvation = -2580.425775 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09652 -37.99762 -36.83682 -33.90182 -32.89080 -31.41490 -29.02595 -28.06955 -27.64500 -25.29562 -24.08194 -22.94795 -21.64137 -18.73754 -18.27500 -17.40761 -16.89565 -16.22022 -15.93477 -15.48975 -15.43193 -15.15772 -14.91653 -14.10786 -13.98114 -13.75391 -13.43014 -13.26135 -13.02407 -12.81223 -12.78433 -12.53125 -12.30652 -12.21467 -11.96685 -11.81780 -10.67367 -10.64092 -10.49192 -10.22144 -8.81875 -8.30081 -7.80506 -5.24301 0.49372 0.68273 1.46786 1.47823 1.55458 2.13769 2.53201 3.08005 3.34925 3.71531 3.92975 4.08174 4.23883 4.26386 4.42846 4.49250 4.53701 4.58678 4.69487 4.82073 4.87335 4.91730 4.96262 5.05387 5.08326 5.26015 5.36272 5.63188 5.65789 5.75532 5.82226 6.17057 6.34324 6.49633 7.17655 7.34320 7.90614 8.33095 9.22940 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029276 B = 0.006769 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.173636 B = 4135.664128 C = 4521.717201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.631 5.631 3 C 0.111 3.889 4 C 0.367 3.633 5 C -0.240 4.240 6 C -0.037 4.037 7 C -0.200 4.200 8 C 0.192 3.808 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.252 4.252 12 H 0.074 0.926 13 C -0.057 4.057 14 N -0.939 5.939 15 Si 0.963 3.037 16 H -0.283 1.283 17 H -0.300 1.300 18 H -0.270 1.270 19 C 0.139 3.861 20 N -0.566 5.566 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.032 0.968 25 H 0.101 0.899 26 H 0.044 0.956 27 H 0.154 0.846 28 H 0.142 0.858 29 H 0.059 0.941 30 H 0.071 0.929 31 H -0.002 1.002 32 H 0.016 0.984 33 H 0.036 0.964 34 H 0.245 0.755 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.813 6.938 9.635 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.348 5.348 3 C -0.032 4.032 4 C 0.132 3.868 5 C -0.264 4.264 6 C -0.063 4.063 7 C -0.207 4.207 8 C 0.066 3.934 9 N -0.330 5.330 10 C 0.033 3.967 11 C -0.382 4.382 12 H 0.092 0.908 13 C -0.251 4.251 14 N -0.586 5.586 15 Si 0.792 3.208 16 H -0.209 1.209 17 H -0.227 1.227 18 H -0.195 1.195 19 C -0.017 4.017 20 N -0.284 5.284 21 H 0.080 0.920 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.119 0.881 26 H 0.063 0.937 27 H 0.171 0.829 28 H 0.159 0.841 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.016 0.984 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.473 7.870 9.541 15.579 hybrid contribution 0.602 -0.564 -1.067 1.348 sum -8.872 7.306 8.474 14.279 Atomic orbital electron populations 1.21891 0.76626 1.04000 1.02300 1.46376 1.06179 1.02423 1.79780 1.21456 0.96860 0.84447 1.00479 1.18635 0.88433 0.87191 0.92506 1.21613 1.01739 0.91360 1.11657 1.21401 0.93315 0.98551 0.93068 1.21712 0.95537 0.98527 1.04927 1.19878 0.96358 0.91333 0.85801 1.44350 1.21976 1.55094 1.11565 1.20533 0.92117 0.91600 0.92420 1.19556 0.91964 1.36597 0.90109 0.90786 1.25714 1.00237 1.01952 0.97221 1.70258 1.29060 1.56684 1.02608 0.85327 0.80491 0.77793 0.77162 1.20950 1.22728 1.19463 1.22205 0.99110 0.87017 0.93410 1.67077 1.07317 1.32245 1.21732 0.92025 0.89080 0.91086 0.94910 0.88070 0.93683 0.82872 0.84068 0.92296 0.91030 0.98387 0.96518 0.94579 0.94621 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.67 10.25 127.77 1.31 2.98 16 2 N -0.63 -17.41 3.39 -754.00 -2.56 -19.97 16 3 C 0.11 2.68 10.19 127.77 1.30 3.98 16 4 C 0.37 12.97 7.37 133.07 0.98 13.96 16 5 C -0.24 -7.79 9.27 22.50 0.21 -7.58 16 6 C -0.04 -1.30 9.85 22.44 0.22 -1.08 16 7 C -0.20 -7.97 5.48 -19.76 -0.11 -8.08 16 8 C 0.19 7.75 5.85 85.63 0.50 8.25 16 9 N -0.61 -30.48 2.91 -731.30 -2.13 -32.61 16 10 C 0.18 8.85 9.02 127.77 1.15 10.00 16 11 C -0.25 -13.90 9.68 84.04 0.81 -13.09 16 12 H 0.07 3.94 7.86 -2.91 -0.02 3.92 16 13 C -0.06 -3.24 5.06 84.87 0.43 -2.81 16 14 N -0.94 -57.11 10.67 21.65 0.23 -56.88 16 15 Si 0.96 46.30 29.58 68.60 2.03 48.33 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 C 0.14 5.78 10.85 84.62 0.92 6.69 16 20 N -0.57 -22.86 9.57 -193.26 -1.85 -24.71 16 21 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 22 H 0.09 1.18 7.92 -2.39 -0.02 1.16 16 23 H 0.07 1.25 5.98 -2.39 -0.01 1.23 16 24 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.10 1.62 7.79 -2.39 -0.02 1.60 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.15 3.86 6.03 -2.91 -0.02 3.85 16 28 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.06 2.27 7.98 -2.39 -0.02 2.25 16 30 H 0.07 2.48 7.81 -2.39 -0.02 2.46 16 31 H 0.00 -0.12 7.40 -2.39 -0.02 -0.14 16 32 H 0.02 0.88 7.21 -2.39 -0.02 0.86 16 33 H 0.04 1.48 7.84 -2.39 -0.02 1.46 16 34 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.14 5.81 8.06 -2.91 -0.02 5.78 16 Total: -1.00 -69.83 292.98 4.51 -65.32 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.06 Total: 7.29 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 7.73 Total: 13.23 kcal Atomic # 7 Polarization: -127.86 SS G_CDS: -6.30 Total: -134.16 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -69.83 4.51 -65.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119852742.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.907 kcal (2) G-P(sol) polarization free energy of solvation -69.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds