Wall clock time and date at job start Sun Mar 29 2020 22:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34950 * 126.03425 * 2 1 4 4 C 1.35317 * 107.74032 * 179.75499 * 3 2 1 5 5 C 1.39865 * 107.92563 * 0.39214 * 4 3 2 6 6 C 1.50695 * 125.90125 * 179.86049 * 5 4 3 7 7 N 1.46904 * 109.46951 * 94.71993 * 6 5 4 8 8 C 1.46900 * 111.00269 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46884 * 174.87541 * 8 7 6 10 10 C 1.50705 * 115.55206 * 296.30337 * 9 8 7 11 11 H 1.08003 * 119.99437 * 95.20908 * 10 9 8 12 12 C 1.37877 * 120.00329 * 274.93418 * 10 9 8 13 13 N 1.31515 * 119.99732 * 355.41631 * 12 10 9 14 14 Si 1.86797 * 119.99830 * 175.41408 * 12 10 9 15 15 H 1.48503 * 109.46755 * 90.00110 * 14 12 10 16 16 H 1.48502 * 109.46887 * 209.99551 * 14 12 10 17 17 H 1.48498 * 109.47472 * 329.99881 * 14 12 10 18 18 C 1.53001 * 117.50130 * 81.98067 * 9 8 7 19 19 C 1.53000 * 117.49451 * 150.64227 * 9 8 7 20 20 N 1.30838 * 108.19941 * 359.60592 * 5 4 3 21 21 H 1.09004 * 109.46956 * 269.97175 * 1 2 3 22 22 H 1.08995 * 109.47622 * 29.96942 * 1 2 3 23 23 H 1.09000 * 109.47600 * 149.97676 * 1 2 3 24 24 H 1.07996 * 126.13125 * 359.97438 * 3 2 1 25 25 H 1.08008 * 126.03347 * 180.27547 * 4 3 2 26 26 H 1.09003 * 109.47471 * 334.72297 * 6 5 4 27 27 H 1.08996 * 109.47373 * 214.71448 * 6 5 4 28 28 H 1.00904 * 111.00100 * 56.04793 * 7 6 5 29 29 H 1.09002 * 109.46699 * 54.87769 * 8 7 6 30 30 H 1.08993 * 109.47270 * 294.87686 * 8 7 6 31 31 H 0.96996 * 119.99571 * 180.02562 * 13 12 10 32 32 H 1.08998 * 117.50117 * 214.99752 * 18 9 8 33 33 H 1.09002 * 117.49567 * 0.02562 * 18 9 8 34 34 H 1.08997 * 117.50075 * 359.97337 * 19 9 8 35 35 H 1.09002 * 117.49945 * 144.97567 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6666 0.0055 5 6 3.5346 -0.7321 -0.0001 6 6 4.7496 -1.6235 0.0002 7 7 5.0726 -2.0106 1.3800 8 6 6.2542 -2.8825 1.4194 9 6 6.6350 -3.1599 2.8750 10 6 7.0596 -1.9563 3.6765 11 1 6.3397 -1.4344 4.2895 12 6 8.3683 -1.5247 3.6315 13 7 9.2656 -2.2148 2.9619 14 14 8.8669 0.0400 4.5216 15 1 9.2843 -0.2907 5.9078 16 1 9.9986 0.6790 3.8030 17 1 7.7144 0.9756 4.5615 18 6 5.8680 -4.2621 3.6083 19 6 7.3207 -4.4922 3.1842 20 7 2.2891 -1.1327 -0.0001 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5133 23 1 -0.3634 -0.8897 -0.5142 24 1 1.9281 2.1194 -0.0004 25 1 4.4210 1.2964 0.0112 26 1 5.5937 -1.0875 -0.4338 27 1 4.5448 -2.5172 -0.5893 28 1 4.2826 -2.4524 1.8260 29 1 7.0853 -2.3911 0.9136 30 1 6.0284 -3.8233 0.9174 31 1 10.1863 -1.9114 2.9305 32 1 5.6704 -4.1167 4.6703 33 1 5.0923 -4.7900 3.0535 34 1 7.5002 -5.1712 2.3508 35 1 8.0792 -4.4981 3.9671 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124757296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:49 Heat of formation + Delta-G solvation = 107.148510 kcal Electronic energy + Delta-G solvation = -16135.486563 eV Core-core repulsion = 13557.253232 eV Total energy + Delta-G solvation = -2578.233331 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.93918 -36.97163 -34.76008 -32.67161 -31.71650 -29.92487 -27.97801 -25.70452 -24.88381 -22.86997 -20.96644 -20.91050 -19.54147 -18.82244 -16.90830 -15.98540 -15.39475 -14.83504 -14.35258 -14.27480 -13.83695 -13.70529 -13.27678 -13.00919 -12.54181 -12.47674 -12.10649 -11.52607 -11.41662 -11.13066 -10.81749 -10.60090 -10.42407 -10.33248 -10.05250 -9.32783 -9.09557 -8.82248 -8.37370 -8.24080 -7.93786 -7.46198 -5.85851 -3.87444 2.03370 2.63469 3.01886 3.40311 3.46800 3.53237 4.53713 4.56158 4.88812 5.01150 5.04368 5.24710 5.29221 5.43644 5.49245 5.58751 5.89800 6.04403 6.13007 6.24406 6.33097 6.42489 6.58754 6.70463 6.84563 6.86220 6.97277 7.14810 7.24240 7.60332 7.64697 7.91819 8.01637 8.06780 8.23242 8.65811 9.11370 9.75139 11.23456 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025959 B = 0.006159 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.347289 B = 4545.270236 C = 5156.795821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.384 5.384 3 C 0.042 3.958 4 C -0.248 4.248 5 C 0.091 3.909 6 C 0.139 3.861 7 N -0.661 5.661 8 C 0.108 3.892 9 C 0.048 3.952 10 C -0.464 4.464 11 H 0.058 0.942 12 C 0.066 3.934 13 N -0.888 5.888 14 Si 0.888 3.112 15 H -0.285 1.285 16 H -0.288 1.288 17 H -0.273 1.273 18 C -0.218 4.218 19 C -0.151 4.151 20 N -0.299 5.299 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.170 0.830 25 H 0.148 0.852 26 H 0.088 0.912 27 H 0.032 0.968 28 H 0.334 0.666 29 H 0.074 0.926 30 H -0.003 1.003 31 H 0.256 0.744 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.486 4.661 -7.167 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.167 5.167 3 C -0.103 4.103 4 C -0.278 4.278 5 C -0.075 4.075 6 C 0.007 3.993 7 N -0.292 5.292 8 C -0.020 4.020 9 C 0.047 3.953 10 C -0.503 4.503 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.716 3.284 15 H -0.211 1.211 16 H -0.214 1.214 17 H -0.198 1.198 18 C -0.255 4.255 19 C -0.190 4.190 20 N -0.122 5.122 21 H 0.090 0.910 22 H 0.101 0.899 23 H 0.104 0.896 24 H 0.187 0.813 25 H 0.166 0.834 26 H 0.106 0.894 27 H 0.050 0.950 28 H 0.151 0.849 29 H 0.092 0.908 30 H 0.015 0.985 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.880 4.260 -7.105 16.164 hybrid contribution 0.428 0.832 0.152 0.948 sum -13.451 5.092 -6.953 15.975 Atomic orbital electron populations 1.21754 0.74832 1.03960 1.03092 1.48431 1.06277 1.03960 1.58030 1.22456 0.91317 0.93186 1.03338 1.21442 0.96861 0.94684 1.14807 1.22354 0.92834 0.94356 0.97990 1.20262 0.91468 0.95338 0.92196 1.60286 1.07817 1.47843 1.13266 1.21554 0.91294 0.91356 0.97832 1.18835 0.96706 0.88923 0.90807 1.20288 0.93793 1.10473 1.25705 0.92419 1.24927 0.96532 0.96564 0.95479 1.70019 1.02140 1.38118 1.42334 0.86666 0.78068 0.84260 0.79400 1.21096 1.21441 1.19819 1.22999 0.94525 1.07916 1.00057 1.22491 0.93127 1.01495 1.01847 1.77287 1.01573 1.07772 1.25578 0.91039 0.89877 0.89643 0.81280 0.83411 0.89368 0.94959 0.84892 0.90770 0.98462 0.93416 0.90630 0.92258 0.92299 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.87 11.47 59.85 0.69 1.56 16 2 N -0.38 -5.16 4.01 -68.17 -0.27 -5.43 16 3 C 0.04 0.53 11.49 -17.22 -0.20 0.33 16 4 C -0.25 -3.79 10.74 -40.01 -0.43 -4.22 16 5 C 0.09 1.57 6.73 -82.41 -0.55 1.02 16 6 C 0.14 2.46 6.24 -4.98 -0.03 2.43 16 7 N -0.66 -13.75 6.34 -115.06 -0.73 -14.48 16 8 C 0.11 2.46 5.51 -3.83 -0.02 2.44 16 9 C 0.05 1.21 1.64 -155.66 -0.25 0.95 16 10 C -0.46 -12.96 8.71 -34.44 -0.30 -13.26 16 11 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 12 C 0.07 1.85 5.43 -17.82 -0.10 1.76 16 13 N -0.89 -25.54 12.65 55.43 0.70 -24.84 16 14 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 C -0.22 -4.93 9.96 -26.69 -0.27 -5.20 16 19 C -0.15 -3.68 9.15 -26.69 -0.24 -3.92 16 20 N -0.30 -5.06 12.58 33.67 0.42 -4.64 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 25 H 0.15 2.10 8.06 -52.48 -0.42 1.67 16 26 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.33 6.89 8.78 -39.29 -0.34 6.55 16 29 H 0.07 1.83 8.13 -51.93 -0.42 1.41 16 30 H 0.00 -0.06 8.10 -51.93 -0.42 -0.48 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 2.20 8.14 -51.93 -0.42 1.78 16 LS Contribution 304.03 15.07 4.58 4.58 Total: -1.00 -31.73 304.03 -7.41 -39.14 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.38 Total: 5.01 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.71 Total: -16.12 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.12 Total: -49.40 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.73 -7.41 -39.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124757296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.288 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds