Wall clock time and date at job start Sun Mar 29 2020 22:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34950 * 126.03425 * 2 1 4 4 C 1.35317 * 107.74032 * 179.75499 * 3 2 1 5 5 C 1.39865 * 107.92563 * 0.39214 * 4 3 2 6 6 C 1.50695 * 125.90125 * 179.86049 * 5 4 3 7 7 N 1.46904 * 109.46951 * 94.71993 * 6 5 4 8 8 C 1.46900 * 111.00269 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46884 * 174.87541 * 8 7 6 10 10 C 1.50705 * 115.55206 * 296.30337 * 9 8 7 11 11 H 1.08003 * 119.99437 * 95.20908 * 10 9 8 12 12 C 1.37877 * 120.00329 * 274.93418 * 10 9 8 13 13 N 1.31515 * 119.99732 * 355.41631 * 12 10 9 14 14 Si 1.86797 * 119.99830 * 175.41408 * 12 10 9 15 15 H 1.48503 * 109.46755 * 90.00110 * 14 12 10 16 16 H 1.48502 * 109.46887 * 209.99551 * 14 12 10 17 17 H 1.48498 * 109.47472 * 329.99881 * 14 12 10 18 18 C 1.53001 * 117.50130 * 81.98067 * 9 8 7 19 19 C 1.53000 * 117.49451 * 150.64227 * 9 8 7 20 20 N 1.30838 * 108.19941 * 359.60592 * 5 4 3 21 21 H 1.09004 * 109.46956 * 269.97175 * 1 2 3 22 22 H 1.08995 * 109.47622 * 29.96942 * 1 2 3 23 23 H 1.09000 * 109.47600 * 149.97676 * 1 2 3 24 24 H 1.07996 * 126.13125 * 359.97438 * 3 2 1 25 25 H 1.08008 * 126.03347 * 180.27547 * 4 3 2 26 26 H 1.09003 * 109.47471 * 334.72297 * 6 5 4 27 27 H 1.08996 * 109.47373 * 214.71448 * 6 5 4 28 28 H 1.00904 * 111.00100 * 56.04793 * 7 6 5 29 29 H 1.09002 * 109.46699 * 54.87769 * 8 7 6 30 30 H 1.08993 * 109.47270 * 294.87686 * 8 7 6 31 31 H 0.96996 * 119.99571 * 180.02562 * 13 12 10 32 32 H 1.08998 * 117.50117 * 214.99752 * 18 9 8 33 33 H 1.09002 * 117.49567 * 0.02562 * 18 9 8 34 34 H 1.08997 * 117.50075 * 359.97337 * 19 9 8 35 35 H 1.09002 * 117.49945 * 144.97567 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6666 0.0055 5 6 3.5346 -0.7321 -0.0001 6 6 4.7496 -1.6235 0.0002 7 7 5.0726 -2.0106 1.3800 8 6 6.2542 -2.8825 1.4194 9 6 6.6350 -3.1599 2.8750 10 6 7.0596 -1.9563 3.6765 11 1 6.3397 -1.4344 4.2895 12 6 8.3683 -1.5247 3.6315 13 7 9.2656 -2.2148 2.9619 14 14 8.8669 0.0400 4.5216 15 1 9.2843 -0.2907 5.9078 16 1 9.9986 0.6790 3.8030 17 1 7.7144 0.9756 4.5615 18 6 5.8680 -4.2621 3.6083 19 6 7.3207 -4.4922 3.1842 20 7 2.2891 -1.1327 -0.0001 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5133 23 1 -0.3634 -0.8897 -0.5142 24 1 1.9281 2.1194 -0.0004 25 1 4.4210 1.2964 0.0112 26 1 5.5937 -1.0875 -0.4338 27 1 4.5448 -2.5172 -0.5893 28 1 4.2826 -2.4524 1.8260 29 1 7.0853 -2.3911 0.9136 30 1 6.0284 -3.8233 0.9174 31 1 10.1863 -1.9114 2.9305 32 1 5.6704 -4.1167 4.6703 33 1 5.0923 -4.7900 3.0535 34 1 7.5002 -5.1712 2.3508 35 1 8.0792 -4.4981 3.9671 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124757296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:49 Heat of formation + Delta-G solvation = 86.138470 kcal Electronic energy + Delta-G solvation = -16136.397627 eV Core-core repulsion = 13557.253232 eV Total energy + Delta-G solvation = -2579.144395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.02087 -38.81189 -36.27088 -33.95803 -33.69578 -31.00926 -29.28140 -27.55495 -26.35603 -24.42873 -22.80141 -21.98784 -21.03232 -20.50373 -18.18988 -17.67788 -16.72512 -16.39134 -16.21805 -15.58784 -15.35410 -15.08769 -14.69074 -14.51538 -13.79452 -13.44427 -13.35820 -13.08182 -13.01339 -12.83766 -12.77189 -12.58038 -12.30317 -11.98057 -11.57099 -11.22090 -10.86228 -10.31905 -10.22983 -9.88213 -9.43853 -9.08338 -7.99429 -6.06300 0.97129 1.44427 1.46477 1.57245 1.73606 1.83315 2.51355 3.29875 3.38930 3.63975 3.77837 3.95662 4.22305 4.32626 4.45290 4.47578 4.53308 4.64549 4.71475 4.73770 4.79036 4.91268 4.99853 5.00351 5.08445 5.18032 5.32015 5.68167 5.69266 5.73913 5.89980 6.24367 6.32547 6.49938 6.65930 6.80174 6.95908 7.58522 9.09068 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025959 B = 0.006159 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.347289 B = 4545.270236 C = 5156.795821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.381 5.381 3 C 0.063 3.937 4 C -0.283 4.283 5 C 0.069 3.931 6 C 0.144 3.856 7 N -0.670 5.670 8 C 0.123 3.877 9 C 0.021 3.979 10 C -0.478 4.478 11 H 0.043 0.957 12 C 0.023 3.977 13 N -0.912 5.912 14 Si 0.945 3.055 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.193 4.193 19 C -0.155 4.155 20 N -0.332 5.332 21 H 0.082 0.918 22 H 0.121 0.879 23 H 0.087 0.913 24 H 0.217 0.783 25 H 0.149 0.851 26 H 0.086 0.914 27 H 0.038 0.962 28 H 0.334 0.666 29 H 0.048 0.952 30 H 0.011 0.989 31 H 0.256 0.744 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.363 5.862 -7.416 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.164 5.164 3 C -0.084 4.084 4 C -0.312 4.312 5 C -0.097 4.097 6 C 0.013 3.987 7 N -0.301 5.301 8 C -0.006 4.006 9 C 0.020 3.980 10 C -0.516 4.516 11 H 0.061 0.939 12 C -0.176 4.176 13 N -0.551 5.551 14 Si 0.772 3.228 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.231 4.231 19 C -0.193 4.193 20 N -0.157 5.157 21 H 0.100 0.900 22 H 0.139 0.861 23 H 0.105 0.895 24 H 0.234 0.766 25 H 0.167 0.833 26 H 0.105 0.895 27 H 0.056 0.944 28 H 0.151 0.849 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.778 5.449 -7.352 18.240 hybrid contribution 0.884 0.486 0.224 1.034 sum -14.893 5.934 -7.128 17.546 Atomic orbital electron populations 1.22190 0.71912 1.06016 1.04436 1.48861 1.07921 1.03289 1.56341 1.23102 0.90187 0.94830 1.00242 1.21660 0.98519 0.94075 1.16952 1.22251 0.92707 0.95135 0.99558 1.20176 0.92260 0.95785 0.90480 1.60192 1.07208 1.47307 1.15396 1.21230 0.91300 0.91963 0.96107 1.18976 0.98369 0.88576 0.92092 1.20474 0.93744 1.11470 1.25901 0.93871 1.25558 0.96590 0.99144 0.96334 1.70115 1.02257 1.39334 1.43439 0.85761 0.77610 0.80956 0.78473 1.20594 1.20988 1.19810 1.22976 0.94088 1.05998 0.99997 1.22385 0.93642 1.01599 1.01720 1.77177 1.01854 1.09939 1.26756 0.89982 0.86060 0.89463 0.76607 0.83311 0.89535 0.94428 0.84864 0.93386 0.97085 0.93471 0.90846 0.89611 0.90991 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 11.47 127.77 1.47 2.70 16 2 N -0.38 -9.29 4.01 -369.57 -1.48 -10.77 16 3 C 0.06 1.40 11.49 83.54 0.96 2.36 16 4 C -0.28 -8.34 10.74 21.99 0.24 -8.10 16 5 C 0.07 2.34 6.73 43.10 0.29 2.63 16 6 C 0.14 5.14 6.24 85.55 0.53 5.68 16 7 N -0.67 -28.00 6.34 -517.94 -3.29 -31.28 16 8 C 0.12 5.64 5.51 86.30 0.48 6.11 16 9 C 0.02 1.04 1.64 -52.93 -0.09 0.95 16 10 C -0.48 -26.94 8.71 25.60 0.22 -26.72 16 11 H 0.04 2.50 7.82 -2.91 -0.02 2.48 16 12 C 0.02 1.27 5.43 84.65 0.46 1.73 16 13 N -0.91 -53.15 12.65 21.45 0.27 -52.88 16 14 Si 0.95 45.08 29.54 68.60 2.03 47.11 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 17 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 18 C -0.19 -8.57 9.96 30.62 0.30 -8.27 16 19 C -0.16 -7.54 9.15 30.62 0.28 -7.26 16 20 N -0.33 -10.96 12.58 -47.39 -0.60 -11.56 16 21 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 22 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.22 2.55 8.06 -2.91 -0.02 2.53 16 25 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 26 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.33 13.76 8.78 -89.69 -0.79 12.97 16 29 H 0.05 2.42 8.13 -2.39 -0.02 2.40 16 30 H 0.01 0.47 8.10 -2.39 -0.02 0.45 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.55 16 32 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -68.54 304.03 2.36 -66.19 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.28 Total: 21.38 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 5.14 Total: -28.19 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -5.09 Total: -106.49 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -68.54 2.36 -66.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124757296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.327 kcal (2) G-P(sol) polarization free energy of solvation -68.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds