Wall clock time and date at job start Sun Mar 29 2020 22:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.31784 * 119.08141 * 60.00463 * 4 2 1 6 6 C 1.32542 * 121.01390 * 180.02562 * 5 4 2 7 7 C 1.38119 * 119.19612 * 359.97438 * 6 5 4 8 8 C 1.39626 * 118.33526 * 359.97438 * 7 6 5 9 9 N 1.38538 * 120.53387 * 180.02562 * 8 7 6 10 10 C 1.46505 * 120.00170 * 4.99933 * 9 8 7 11 11 C 1.46503 * 119.99944 * 185.00188 * 9 8 7 12 12 C 1.50698 * 109.47138 * 89.99856 * 11 9 8 13 13 H 1.07997 * 120.00012 * 0.02562 * 12 11 9 14 14 C 1.37882 * 119.99839 * 179.97438 * 12 11 9 15 15 N 1.31518 * 119.99826 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99842 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47134 * 90.00669 * 16 14 12 18 18 H 1.48506 * 109.46842 * 210.00692 * 16 14 12 19 19 H 1.48500 * 109.47305 * 330.00056 * 16 14 12 20 20 N 1.31750 * 119.08438 * 239.73548 * 4 2 1 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.08003 * 120.40880 * 179.97438 * 6 5 4 29 29 H 1.08001 * 120.83398 * 180.02562 * 7 6 5 30 30 H 1.09003 * 109.46638 * 89.99990 * 10 9 8 31 31 H 1.08989 * 109.47175 * 210.00047 * 10 9 8 32 32 H 1.09004 * 109.46619 * 330.00446 * 10 9 8 33 33 H 1.09005 * 109.46849 * 210.00185 * 11 9 8 34 34 H 1.08994 * 109.47120 * 329.99406 * 11 9 8 35 35 H 0.96995 * 119.99616 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7030 -0.2446 -2.4185 6 6 2.1231 -0.8396 -3.5258 7 6 2.9184 -1.9644 -3.4262 8 6 3.2496 -2.4311 -2.1526 9 7 4.0450 -3.5551 -1.9998 10 6 4.6357 -4.1999 -3.1752 11 6 4.2953 -4.0989 -0.6626 12 6 3.2336 -5.1141 -0.3263 13 1 2.4508 -5.3326 -1.0376 14 6 3.2621 -5.7646 0.8890 15 7 4.2156 -5.4988 1.7550 16 14 1.9464 -7.0234 1.3056 17 1 2.3880 -8.3682 0.8564 18 1 1.7245 -7.0401 2.7739 19 1 0.6806 -6.6627 0.6179 20 7 2.7929 -1.7769 -1.0887 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.8469 -0.4496 -4.4944 29 1 3.2758 -2.4698 -4.3112 30 1 5.6123 -3.7604 -3.3783 31 1 4.7500 -5.2670 -2.9852 32 1 3.9843 -4.0518 -4.0366 33 1 5.2747 -4.5771 -0.6424 34 1 4.2704 -3.2911 0.0687 35 1 4.2354 -5.9561 2.6101 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124892397.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:46 Heat of formation + Delta-G solvation = 25.534156 kcal Electronic energy + Delta-G solvation = -16607.514568 eV Core-core repulsion = 14025.742173 eV Total energy + Delta-G solvation = -2581.772395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.80142 -38.27309 -36.12609 -34.81980 -33.80381 -31.56272 -29.66745 -27.99761 -27.41724 -25.44891 -24.88342 -22.99953 -20.98617 -18.75410 -18.42465 -18.05214 -16.61691 -16.23102 -16.06639 -15.86746 -15.22509 -14.98936 -14.92179 -14.41180 -14.03656 -13.69143 -13.33463 -13.18631 -12.94862 -12.85959 -12.61216 -12.45772 -12.18652 -12.16670 -12.01699 -11.79922 -11.49775 -11.25429 -10.64381 -10.52523 -9.89012 -8.73823 -8.16488 -6.36951 0.28324 0.63430 1.33884 1.35987 1.46271 2.17000 2.38313 3.06457 3.09087 3.18960 3.55448 3.97746 4.15680 4.22533 4.28166 4.35263 4.46103 4.63811 4.74422 4.81082 4.85817 4.88503 4.96784 4.98523 4.99482 5.14319 5.22067 5.36861 5.39146 5.61535 5.70277 5.97655 6.08383 6.41478 6.70092 6.76434 7.31813 7.58532 8.83816 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021046 B = 0.008257 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.069295 B = 3390.339669 C = 4155.267787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.033 4.033 3 C -0.124 4.124 4 C 0.346 3.654 5 N -0.575 5.575 6 C 0.171 3.829 7 C -0.313 4.313 8 C 0.418 3.582 9 N -0.597 5.597 10 C 0.093 3.907 11 C 0.270 3.730 12 C -0.537 4.537 13 H 0.045 0.955 14 C 0.012 3.988 15 N -0.925 5.925 16 Si 0.963 3.037 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.277 1.277 20 N -0.605 5.605 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.032 0.968 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.204 0.796 29 H 0.166 0.834 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.014 0.986 34 H 0.014 0.986 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.021 9.276 -9.304 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.054 4.054 3 C -0.182 4.182 4 C 0.076 3.924 5 N -0.295 5.295 6 C 0.009 3.991 7 C -0.342 4.342 8 C 0.175 3.825 9 N -0.306 5.306 10 C -0.049 4.049 11 C 0.148 3.852 12 C -0.576 4.576 13 H 0.063 0.937 14 C -0.187 4.187 15 N -0.565 5.565 16 Si 0.788 3.212 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.202 1.202 20 N -0.329 5.329 21 H 0.089 0.911 22 H 0.105 0.895 23 H 0.051 0.949 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.220 0.780 29 H 0.184 0.816 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.032 0.968 34 H 0.032 0.968 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.084 9.450 -8.345 13.252 hybrid contribution 0.109 -1.556 -0.103 1.563 sum -3.975 7.895 -8.448 12.227 Atomic orbital electron populations 1.21677 0.91934 1.01142 1.03675 1.20037 0.97493 0.96477 0.91373 1.21662 0.99959 0.92907 1.03647 1.23235 0.87765 0.87087 0.94276 1.68164 1.28172 1.34641 0.98540 1.23451 0.88317 0.89105 0.98220 1.22387 1.10395 1.04439 0.96942 1.19057 0.86945 0.86351 0.90156 1.46993 1.48966 1.25494 1.09195 1.21846 0.98224 0.98006 0.86815 1.18764 0.94808 0.92697 0.78910 1.21622 1.11634 1.22636 1.01710 0.93705 1.25763 0.98086 0.99068 0.95776 1.70043 1.34277 1.43582 1.08560 0.85489 0.78977 0.79279 0.77488 1.19072 1.20353 1.20161 1.67898 1.18200 1.12005 1.34846 0.91092 0.89478 0.94916 0.91103 0.89566 0.94287 0.91160 0.77976 0.81648 0.91691 0.91286 0.89191 0.96802 0.96822 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.09 71.98 0.65 -2.84 16 2 C -0.03 -1.09 3.25 -11.54 -0.04 -1.13 16 3 C -0.12 -3.22 9.09 71.98 0.65 -2.57 16 4 C 0.35 13.54 6.34 138.77 0.88 14.42 16 5 N -0.57 -19.58 9.80 -188.10 -1.84 -21.42 16 6 C 0.17 4.94 11.29 84.56 0.95 5.90 16 7 C -0.31 -10.10 9.33 22.58 0.21 -9.89 16 8 C 0.42 17.89 7.39 133.16 0.98 18.88 16 9 N -0.60 -26.41 2.96 -732.64 -2.17 -28.58 16 10 C 0.09 3.00 10.31 127.77 1.32 4.32 16 11 C 0.27 14.67 5.24 85.63 0.45 15.12 16 12 C -0.54 -31.15 9.39 25.60 0.24 -30.91 16 13 H 0.04 2.62 7.81 -2.91 -0.02 2.60 16 14 C 0.01 0.71 5.46 84.66 0.46 1.17 16 15 N -0.92 -55.73 13.29 21.45 0.28 -55.45 16 16 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 N -0.61 -28.20 9.10 -185.44 -1.69 -29.89 16 21 H 0.07 1.85 8.01 -2.39 -0.02 1.83 16 22 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.03 1.01 8.14 -2.38 -0.02 1.00 16 24 H 0.07 2.61 8.10 -2.39 -0.02 2.59 16 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.74 8.01 -2.39 -0.02 1.72 16 28 H 0.20 3.74 8.06 -2.91 -0.02 3.71 16 29 H 0.17 4.08 6.16 -2.91 -0.02 4.06 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 32 H 0.09 2.30 6.05 -2.38 -0.01 2.29 16 33 H 0.01 0.78 8.07 -2.38 -0.02 0.76 16 34 H 0.01 0.84 7.33 -2.39 -0.02 0.82 16 35 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -70.92 296.85 4.44 -66.48 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.06 Total: 9.17 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 6.77 Total: 12.47 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -5.41 Total: -135.33 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -70.92 4.44 -66.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124892397.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.014 kcal (2) G-P(sol) polarization free energy of solvation -70.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds