Wall clock time and date at job start Sun Mar 29 2020 22:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 119.99580 * 2 1 4 4 H 1.08000 * 119.99993 * 160.25058 * 3 2 1 5 5 C 1.38811 * 120.00258 * 340.25183 * 3 2 1 6 6 N 1.31619 * 120.00196 * 347.15949 * 5 3 2 7 7 Si 1.86805 * 120.00023 * 167.16684 * 5 3 2 8 8 H 1.48508 * 109.46847 * 269.99646 * 7 5 3 9 9 H 1.48498 * 109.47121 * 29.99205 * 7 5 3 10 10 H 1.48501 * 109.47324 * 150.00085 * 7 5 3 11 11 C 1.46490 * 119.99929 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.68178 * 179.48030 * 11 2 1 13 13 C 1.53361 * 109.68391 * 299.99533 * 11 2 1 14 14 C 1.53105 * 109.51436 * 169.67843 * 13 11 2 15 15 C 1.53367 * 109.50994 * 289.73597 * 14 13 11 16 16 C 1.50821 * 108.38251 * 49.94241 * 15 14 13 17 17 C 1.35750 * 124.12032 * 343.41726 * 16 15 14 18 18 C 1.39301 * 107.99065 * 179.89957 * 17 16 15 19 19 N 1.31075 * 108.07710 * 0.06295 * 18 17 16 20 20 N 1.34326 * 128.03677 * 163.42419 * 16 15 14 21 21 C 1.46501 * 126.08861 * 0.09905 * 20 16 15 22 22 H 1.08997 * 109.47304 * 84.84198 * 1 2 3 23 23 H 1.09002 * 109.46847 * 204.84294 * 1 2 3 24 24 H 1.09005 * 109.47389 * 324.83993 * 1 2 3 25 25 H 0.97003 * 120.00172 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.46720 * 289.69492 * 13 11 2 27 27 H 1.09000 * 109.46466 * 49.67461 * 13 11 2 28 28 H 1.09003 * 109.46695 * 49.74365 * 14 13 11 29 29 H 1.09004 * 109.46787 * 169.72283 * 14 13 11 30 30 H 1.09000 * 109.68691 * 169.66914 * 15 14 13 31 31 H 1.09006 * 109.68109 * 290.21715 * 15 14 13 32 32 H 1.07993 * 125.95991 * 180.02562 * 18 17 16 33 33 H 1.08997 * 109.47676 * 90.00359 * 21 20 16 34 34 H 1.09009 * 109.47036 * 210.00515 * 21 20 16 35 35 H 1.08999 * 109.47601 * 329.99707 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1820 1.2135 0.3160 5 6 1.5167 2.3527 -0.4062 6 7 0.3567 2.2911 -1.0249 7 14 2.3116 4.0104 -0.0748 8 1 1.8612 4.5202 1.2453 9 1 3.7888 3.8587 -0.0690 10 1 1.9165 4.9701 -1.1369 11 6 2.1975 -1.2687 -0.0006 12 1 3.2699 -1.0734 -0.0098 13 6 1.8306 -2.0775 1.2497 14 6 2.3897 -3.4971 1.1227 15 6 1.6094 -4.2605 0.0453 16 6 1.5536 -3.4063 -1.1965 17 6 1.8166 -2.0747 -1.2172 18 6 1.6690 -1.6274 -2.5282 19 7 1.3279 -2.6517 -3.2715 20 7 1.2487 -3.7852 -2.4486 21 6 0.8962 -5.1407 -2.8784 22 1 -0.3634 0.0924 -1.0235 23 1 -0.3633 -0.9326 0.4318 24 1 -0.3634 0.8402 0.5918 25 1 -0.0854 3.1064 -1.3091 26 1 2.2558 -1.5971 2.1309 27 1 0.7459 -2.1220 1.3481 28 1 3.4423 -3.4494 0.8435 29 1 2.2904 -4.0135 2.0775 30 1 2.1149 -5.2000 -0.1778 31 1 0.5979 -4.4621 0.3981 32 1 1.8103 -0.6134 -2.8720 33 1 -0.1827 -5.2764 -2.8043 34 1 1.2108 -5.2875 -3.9117 35 1 1.3985 -5.8667 -2.2392 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135593184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:42 Heat of formation + Delta-G solvation = 99.553030 kcal Electronic energy + Delta-G solvation = -17226.543431 eV Core-core repulsion = 14647.980736 eV Total energy + Delta-G solvation = -2578.562696 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88357 -36.70277 -34.50191 -32.92227 -30.98885 -28.93517 -28.06888 -26.11909 -25.84603 -23.43357 -21.61748 -20.86599 -19.75796 -17.92321 -16.66400 -16.21229 -15.32529 -14.72174 -14.18294 -13.66533 -13.62811 -13.27700 -13.21355 -12.64278 -12.48482 -12.30084 -12.16951 -11.58531 -11.26086 -11.08654 -10.76043 -10.55142 -10.41552 -10.33214 -10.15353 -9.82243 -9.71227 -9.61288 -8.64312 -8.44178 -7.56890 -6.67046 -5.60813 -3.04482 2.42144 3.01514 3.44728 3.50349 3.52249 3.58321 4.58500 4.85076 4.92470 5.16249 5.20224 5.31307 5.47120 5.51560 5.65404 5.72679 5.78936 5.86812 6.01654 6.17463 6.21291 6.31964 6.48248 6.55897 6.89617 6.89757 6.99608 7.09800 7.42202 7.55897 7.62129 7.87119 7.94641 8.37001 8.50511 9.35398 9.99849 10.49186 11.43194 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.034458 B = 0.007958 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.377485 B = 3517.642839 C = 3976.534649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.590 5.590 3 C -0.250 4.250 4 H 0.070 0.930 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.902 3.098 8 H -0.290 1.290 9 H -0.281 1.281 10 H -0.293 1.293 11 C 0.248 3.752 12 H 0.067 0.933 13 C -0.133 4.133 14 C -0.109 4.109 15 C -0.047 4.047 16 C 0.061 3.939 17 C -0.221 4.221 18 C 0.087 3.913 19 N -0.321 5.321 20 N -0.383 5.383 21 C 0.108 3.892 22 H 0.026 0.974 23 H -0.006 1.006 24 H 0.041 0.959 25 H 0.250 0.750 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.183 0.817 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 -14.271 1.885 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.310 5.310 3 C -0.379 4.379 4 H 0.087 0.913 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.217 1.217 9 H -0.206 1.206 10 H -0.219 1.219 11 C 0.138 3.862 12 H 0.085 0.915 13 C -0.172 4.172 14 C -0.147 4.147 15 C -0.086 4.086 16 C -0.067 4.067 17 C -0.235 4.235 18 C -0.098 4.098 19 N -0.142 5.142 20 N -0.166 5.166 21 C -0.035 4.035 22 H 0.044 0.956 23 H 0.013 0.987 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.200 0.800 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.528 -14.631 0.581 14.722 hybrid contribution 0.352 1.210 0.716 1.449 sum 1.880 -13.421 1.297 13.614 Atomic orbital electron populations 1.20682 0.82624 0.94890 0.99164 1.43958 1.01827 0.99920 1.85340 1.19278 0.96537 0.84907 1.37199 0.91266 1.24948 0.97654 0.98146 0.99078 1.70106 1.17021 1.26392 1.41810 0.86280 0.78694 0.84378 0.77339 1.21712 1.20604 1.21932 1.18775 0.95277 0.84713 0.87444 0.91474 1.22145 1.01248 0.93802 1.00032 1.21520 0.99666 0.96574 0.96977 1.20230 1.01117 0.96414 0.90859 1.20889 1.03045 0.95787 0.86974 1.21050 1.12515 0.92318 0.97590 1.23636 0.96303 0.97848 0.92016 1.77466 1.26699 0.92198 1.17844 1.48121 1.55219 1.07863 1.05438 1.21631 1.00892 0.79106 1.01833 0.95599 0.98720 0.93999 0.93926 0.91890 0.91989 0.91766 0.91836 0.91406 0.90680 0.79993 0.91609 0.89986 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.36 8.27 59.85 0.50 4.85 16 2 N -0.59 -14.76 2.71 -174.52 -0.47 -15.23 16 3 C -0.25 -6.80 9.64 -15.06 -0.15 -6.95 16 4 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 5 C 0.00 -0.01 5.11 -17.43 -0.09 -0.10 16 6 N -0.91 -26.60 10.51 55.49 0.58 -26.02 16 7 Si 0.90 21.99 29.57 -169.99 -5.03 16.97 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 C 0.25 5.18 2.95 -68.84 -0.20 4.97 16 12 H 0.07 1.43 7.86 -51.93 -0.41 1.02 16 13 C -0.13 -2.28 5.33 -26.49 -0.14 -2.43 16 14 C -0.11 -1.44 5.90 -26.49 -0.16 -1.60 16 15 C -0.05 -0.62 5.90 -27.63 -0.16 -0.78 16 16 C 0.06 1.05 6.73 -82.33 -0.55 0.50 16 17 C -0.22 -4.52 5.04 -105.05 -0.53 -5.05 16 18 C 0.09 1.89 11.84 -17.48 -0.21 1.69 16 19 N -0.32 -6.59 12.59 30.54 0.38 -6.21 16 20 N -0.38 -6.58 4.00 -63.88 -0.26 -6.84 16 21 C 0.11 1.23 11.32 59.85 0.68 1.91 16 22 H 0.03 0.72 7.42 -51.93 -0.39 0.34 16 23 H -0.01 -0.13 6.32 -51.93 -0.33 -0.46 16 24 H 0.04 1.14 7.11 -51.93 -0.37 0.77 16 25 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.13 6.35 -51.93 -0.33 0.80 16 28 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.71 7.76 -51.93 -0.40 0.31 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.18 4.24 8.06 -52.49 -0.42 3.82 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.08 0.67 7.57 -51.93 -0.39 0.28 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -31.51 282.13 -6.67 -38.19 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.12 Total: -2.12 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.02 Total: -2.99 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.24 Total: -54.30 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.51 -6.67 -38.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135593184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.738 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds