Wall clock time and date at job start Sun Mar 29 2020 22:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 119.99580 * 2 1 4 4 H 1.08000 * 119.99993 * 160.25058 * 3 2 1 5 5 C 1.38811 * 120.00258 * 340.25183 * 3 2 1 6 6 N 1.31619 * 120.00196 * 347.15949 * 5 3 2 7 7 Si 1.86805 * 120.00023 * 167.16684 * 5 3 2 8 8 H 1.48508 * 109.46847 * 269.99646 * 7 5 3 9 9 H 1.48498 * 109.47121 * 29.99205 * 7 5 3 10 10 H 1.48501 * 109.47324 * 150.00085 * 7 5 3 11 11 C 1.46490 * 119.99929 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.68178 * 179.48030 * 11 2 1 13 13 C 1.53361 * 109.68391 * 299.99533 * 11 2 1 14 14 C 1.53105 * 109.51436 * 169.67843 * 13 11 2 15 15 C 1.53367 * 109.50994 * 289.73597 * 14 13 11 16 16 C 1.50821 * 108.38251 * 49.94241 * 15 14 13 17 17 C 1.35750 * 124.12032 * 343.41726 * 16 15 14 18 18 C 1.39301 * 107.99065 * 179.89957 * 17 16 15 19 19 N 1.31075 * 108.07710 * 0.06295 * 18 17 16 20 20 N 1.34326 * 128.03677 * 163.42419 * 16 15 14 21 21 C 1.46501 * 126.08861 * 0.09905 * 20 16 15 22 22 H 1.08997 * 109.47304 * 84.84198 * 1 2 3 23 23 H 1.09002 * 109.46847 * 204.84294 * 1 2 3 24 24 H 1.09005 * 109.47389 * 324.83993 * 1 2 3 25 25 H 0.97003 * 120.00172 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.46720 * 289.69492 * 13 11 2 27 27 H 1.09000 * 109.46466 * 49.67461 * 13 11 2 28 28 H 1.09003 * 109.46695 * 49.74365 * 14 13 11 29 29 H 1.09004 * 109.46787 * 169.72283 * 14 13 11 30 30 H 1.09000 * 109.68691 * 169.66914 * 15 14 13 31 31 H 1.09006 * 109.68109 * 290.21715 * 15 14 13 32 32 H 1.07993 * 125.95991 * 180.02562 * 18 17 16 33 33 H 1.08997 * 109.47676 * 90.00359 * 21 20 16 34 34 H 1.09009 * 109.47036 * 210.00515 * 21 20 16 35 35 H 1.08999 * 109.47601 * 329.99707 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1820 1.2135 0.3160 5 6 1.5167 2.3527 -0.4062 6 7 0.3567 2.2911 -1.0249 7 14 2.3116 4.0104 -0.0748 8 1 1.8612 4.5202 1.2453 9 1 3.7888 3.8587 -0.0690 10 1 1.9165 4.9701 -1.1369 11 6 2.1975 -1.2687 -0.0006 12 1 3.2699 -1.0734 -0.0098 13 6 1.8306 -2.0775 1.2497 14 6 2.3897 -3.4971 1.1227 15 6 1.6094 -4.2605 0.0453 16 6 1.5536 -3.4063 -1.1965 17 6 1.8166 -2.0747 -1.2172 18 6 1.6690 -1.6274 -2.5282 19 7 1.3279 -2.6517 -3.2715 20 7 1.2487 -3.7852 -2.4486 21 6 0.8962 -5.1407 -2.8784 22 1 -0.3634 0.0924 -1.0235 23 1 -0.3633 -0.9326 0.4318 24 1 -0.3634 0.8402 0.5918 25 1 -0.0854 3.1064 -1.3091 26 1 2.2558 -1.5971 2.1309 27 1 0.7459 -2.1220 1.3481 28 1 3.4423 -3.4494 0.8435 29 1 2.2904 -4.0135 2.0775 30 1 2.1149 -5.2000 -0.1778 31 1 0.5979 -4.4621 0.3981 32 1 1.8103 -0.6134 -2.8720 33 1 -0.1827 -5.2764 -2.8043 34 1 1.2108 -5.2875 -3.9117 35 1 1.3985 -5.8667 -2.2392 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135593184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:42 Heat of formation + Delta-G solvation = 79.606369 kcal Electronic energy + Delta-G solvation = -17227.408383 eV Core-core repulsion = 14647.980736 eV Total energy + Delta-G solvation = -2579.427648 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.32360 -38.30053 -36.10201 -34.35825 -32.82858 -30.29781 -29.65193 -27.95540 -27.30271 -25.14541 -23.01468 -22.44971 -21.26897 -19.31462 -18.69428 -17.62383 -16.84981 -16.40589 -15.65768 -15.23455 -15.04405 -14.86505 -14.66142 -14.08701 -13.85064 -13.66495 -13.51830 -13.10433 -12.91167 -12.80231 -12.55166 -12.29833 -12.12632 -12.02364 -11.66060 -11.56563 -11.38691 -11.20327 -10.55997 -10.03639 -9.08812 -8.69226 -7.74204 -5.19494 1.00966 1.48832 1.49594 1.58437 1.78811 1.95810 2.56963 3.37701 3.69410 3.75976 3.85346 4.09563 4.30035 4.41174 4.43304 4.49631 4.65741 4.67052 4.76134 4.81949 4.86140 4.96417 5.04932 5.14996 5.30421 5.34819 5.46172 5.53070 5.65886 5.70551 5.77767 5.83783 6.33722 6.40538 6.86363 7.22938 7.97690 8.42251 9.28572 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.034458 B = 0.007958 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.377485 B = 3517.642839 C = 3976.534649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.196 3.804 2 N -0.602 5.602 3 C -0.254 4.254 4 H 0.073 0.927 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.967 3.033 8 H -0.287 1.287 9 H -0.268 1.268 10 H -0.300 1.300 11 C 0.242 3.758 12 H 0.054 0.946 13 C -0.124 4.124 14 C -0.101 4.101 15 C -0.044 4.044 16 C 0.083 3.917 17 C -0.258 4.258 18 C 0.059 3.941 19 N -0.346 5.346 20 N -0.374 5.374 21 C 0.093 3.907 22 H -0.011 1.011 23 H 0.019 0.981 24 H 0.014 0.986 25 H 0.244 0.756 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.148 0.852 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 -17.530 3.396 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.324 5.324 3 C -0.384 4.384 4 H 0.091 0.909 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.796 3.204 8 H -0.214 1.214 9 H -0.193 1.193 10 H -0.227 1.227 11 C 0.135 3.865 12 H 0.072 0.928 13 C -0.164 4.164 14 C -0.139 4.139 15 C -0.083 4.083 16 C -0.047 4.047 17 C -0.271 4.271 18 C -0.125 4.125 19 N -0.169 5.169 20 N -0.156 5.156 21 C -0.047 4.047 22 H 0.008 0.992 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.165 0.835 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.254 -17.936 2.088 18.198 hybrid contribution 0.147 2.056 0.202 2.071 sum 2.401 -15.881 2.290 16.223 Atomic orbital electron populations 1.20261 0.83277 0.94819 0.96556 1.44143 1.01678 1.01095 1.85445 1.19631 0.96752 0.86099 1.35959 0.90899 1.25703 0.98427 1.01462 0.99542 1.70294 1.18558 1.26575 1.43439 0.85260 0.78368 0.80081 0.76713 1.21373 1.19324 1.22679 1.18966 0.94093 0.83699 0.89774 0.92809 1.22006 1.00760 0.96109 0.97488 1.21508 0.99490 0.93845 0.99101 1.20489 1.02808 0.96965 0.88035 1.21503 0.99712 0.95097 0.88384 1.20947 1.15472 0.94184 0.96490 1.23272 0.98555 0.97155 0.93477 1.77355 1.27552 0.93141 1.18867 1.48565 1.53161 1.08769 1.05153 1.22174 1.02575 0.76560 1.03355 0.99231 0.96219 0.96685 0.94689 0.92021 0.92925 0.91486 0.88053 0.87185 0.88705 0.83488 0.89956 0.89254 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.38 8.27 127.77 1.06 11.43 16 2 N -0.60 -31.11 2.71 -706.07 -1.91 -33.02 16 3 C -0.25 -14.29 9.64 84.03 0.81 -13.48 16 4 H 0.07 3.96 7.80 -2.91 -0.02 3.93 16 5 C -0.06 -3.29 5.11 84.86 0.43 -2.86 16 6 N -0.94 -57.88 10.51 21.65 0.23 -57.65 16 7 Si 0.97 46.53 29.57 68.60 2.03 48.56 16 8 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 11 C 0.24 10.20 2.95 44.41 0.13 10.33 16 12 H 0.05 2.34 7.86 -2.38 -0.02 2.32 16 13 C -0.12 -4.02 5.33 30.75 0.16 -3.85 16 14 C -0.10 -2.20 5.90 30.75 0.18 -2.02 16 15 C -0.04 -0.91 5.90 30.01 0.18 -0.73 16 16 C 0.08 2.65 6.73 41.64 0.28 2.93 16 17 C -0.26 -10.55 5.04 -20.14 -0.10 -10.65 16 18 C 0.06 2.69 11.84 85.06 1.01 3.70 16 19 N -0.35 -14.40 12.59 -57.28 -0.72 -15.12 16 20 N -0.37 -11.92 4.00 -356.00 -1.42 -13.35 16 21 C 0.09 1.72 11.32 127.77 1.45 3.17 16 22 H -0.01 -0.64 7.42 -2.39 -0.02 -0.65 16 23 H 0.02 0.91 6.32 -2.39 -0.02 0.90 16 24 H 0.01 0.83 7.11 -2.38 -0.02 0.82 16 25 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 1.79 6.35 -2.39 -0.02 1.78 16 28 H 0.07 1.47 8.11 -2.39 -0.02 1.45 16 29 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.11 1.46 7.76 -2.39 -0.02 1.44 16 31 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.15 7.59 8.06 -2.91 -0.02 7.56 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.12 1.29 7.57 -2.39 -0.02 1.27 16 Total: -1.00 -73.05 282.13 4.85 -68.20 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.07 Total: 4.42 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.59 Total: -2.04 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -3.83 Total: -119.14 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -73.05 4.85 -68.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135593184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.803 kcal (2) G-P(sol) polarization free energy of solvation -73.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds