Wall clock time and date at job start Sun Mar 29 2020 22:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.45687 * 2 1 4 4 C 1.53346 * 109.41896 * 240.09747 * 2 1 3 5 5 C 1.53190 * 109.14931 * 178.67868 * 4 2 1 6 6 N 1.46917 * 108.89438 * 54.57817 * 5 4 2 7 7 C 1.36939 * 120.63236 * 126.34273 * 6 5 4 8 8 H 1.08001 * 120.00023 * 331.96074 * 7 6 5 9 9 C 1.38810 * 119.99925 * 151.95168 * 7 6 5 10 10 N 1.31616 * 120.00512 * 342.96087 * 9 7 6 11 11 Si 1.86806 * 119.99906 * 162.95965 * 9 7 6 12 12 H 1.48505 * 109.46917 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47002 * 119.99936 * 11 9 7 14 14 H 1.48494 * 109.47321 * 240.00136 * 11 9 7 15 15 C 1.46928 * 118.73811 * 306.32212 * 6 5 4 16 16 C 1.53042 * 109.45759 * 119.97158 * 2 1 3 17 17 H 1.08997 * 109.49545 * 301.34161 * 16 2 1 18 18 N 1.46503 * 109.49636 * 61.43473 * 16 2 1 19 19 C 1.36875 * 126.39904 * 69.68997 * 18 16 2 20 20 C 1.34671 * 106.82137 * 179.84048 * 19 18 16 21 21 N 1.34130 * 108.01697 * 0.42423 * 20 19 18 22 22 C 1.30497 * 109.25681 * 359.73430 * 21 20 19 23 23 H 1.08996 * 109.47384 * 300.03066 * 1 2 3 24 24 H 1.09003 * 109.46933 * 60.02855 * 1 2 3 25 25 H 1.09000 * 109.47358 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.68481 * 58.71322 * 4 2 1 27 27 H 1.09002 * 109.47620 * 298.51783 * 4 2 1 28 28 H 1.09001 * 109.58614 * 294.71550 * 5 4 2 29 29 H 1.08998 * 109.59032 * 174.43981 * 5 4 2 30 30 H 0.97002 * 120.00643 * 179.97438 * 10 9 7 31 31 H 1.09006 * 109.58706 * 173.39747 * 15 6 5 32 32 H 1.08999 * 109.58755 * 293.67847 * 15 6 5 33 33 H 1.08004 * 126.59086 * 359.97438 * 19 18 16 34 34 H 1.07996 * 125.99757 * 180.19023 * 20 19 18 35 35 H 1.08003 * 125.65027 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2537 5 6 3.5714 -0.6885 -1.2642 6 7 4.0678 -1.2489 -0.0001 7 6 4.9763 -2.2735 -0.0001 8 1 5.0058 -2.9691 -0.8258 9 6 5.8595 -2.4180 1.0610 10 7 6.0644 -1.4149 1.8881 11 14 6.7575 -4.0362 1.3151 12 1 6.3558 -4.9968 0.2561 13 1 8.2228 -3.8057 1.2437 14 1 6.4082 -4.5924 2.6469 15 6 3.5713 -0.6887 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6571 -0.2210 2.1398 18 7 1.5801 -2.1118 1.2340 19 6 2.0032 -3.0974 0.3837 20 6 1.3299 -4.2151 0.7168 21 7 0.5109 -3.9177 1.7366 22 6 0.6553 -2.6596 2.0517 23 1 -0.3634 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8903 25 1 -0.3634 -1.0276 0.0005 26 1 1.6593 -0.2217 -2.1447 27 1 1.6980 -1.7559 -1.2421 28 1 3.9144 0.3410 -1.3673 29 1 3.9438 -1.2828 -2.0986 30 1 6.6813 -1.5159 2.6298 31 1 3.9416 -1.2848 2.0984 32 1 3.9163 0.3399 1.3687 33 1 2.7376 -2.9983 -0.4020 34 1 1.4288 -5.1806 0.2432 35 1 0.1231 -2.1421 2.8362 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156498797.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:04 Heat of formation + Delta-G solvation = 73.005259 kcal Electronic energy + Delta-G solvation = -17888.676094 eV Core-core repulsion = 15308.962201 eV Total energy + Delta-G solvation = -2579.713893 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.95044 -39.42790 -35.83112 -33.77899 -32.82550 -30.84740 -29.84871 -28.98781 -25.90576 -24.27556 -22.78202 -22.09806 -21.63360 -20.90805 -18.91387 -17.22468 -16.84611 -16.43753 -15.71407 -15.31608 -15.04298 -14.77403 -14.75694 -14.41313 -14.22301 -13.92386 -13.45397 -13.18222 -13.03287 -12.81436 -12.64141 -12.45283 -12.21144 -11.99592 -11.55955 -11.37308 -11.17472 -10.74444 -10.56950 -10.23838 -9.15269 -8.67046 -7.92140 -5.35566 1.40380 1.46169 1.49020 1.52816 2.20801 2.41854 2.47232 3.26340 3.56830 3.79239 3.88922 3.99265 4.04964 4.31404 4.35921 4.45999 4.63353 4.72330 4.84656 4.87921 4.91646 5.06167 5.09471 5.13315 5.19013 5.22929 5.37920 5.48554 5.58207 5.63497 5.70581 6.05785 6.33990 6.62916 7.10636 7.34856 7.80666 8.30201 9.13909 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024796 B = 0.011684 C = 0.009478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.945184 B = 2395.885195 C = 2953.560772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.090 0.910 4 C -0.134 4.134 5 C 0.137 3.863 6 N -0.601 5.601 7 C -0.245 4.245 8 H 0.068 0.932 9 C -0.041 4.041 10 N -0.931 5.931 11 Si 0.949 3.051 12 H -0.265 1.265 13 H -0.293 1.293 14 H -0.301 1.301 15 C 0.170 3.830 16 C 0.115 3.885 17 H 0.113 0.887 18 N -0.428 5.428 19 C -0.007 4.007 20 C -0.089 4.089 21 N -0.530 5.530 22 C 0.157 3.843 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.021 0.979 29 H 0.055 0.945 30 H 0.248 0.752 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.176 0.824 34 H 0.167 0.833 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 4.060 -3.496 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.109 0.891 4 C -0.172 4.172 5 C 0.012 3.988 6 N -0.324 5.324 7 C -0.375 4.375 8 H 0.086 0.914 9 C -0.236 4.236 10 N -0.577 5.577 11 Si 0.778 3.222 12 H -0.189 1.189 13 H -0.221 1.221 14 H -0.228 1.228 15 C 0.043 3.957 16 C 0.010 3.990 17 H 0.131 0.869 18 N -0.109 5.109 19 C -0.143 4.143 20 C -0.235 4.235 21 N -0.250 5.250 22 C -0.125 4.125 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.193 0.807 34 H 0.184 0.816 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.571 3.662 -3.010 11.585 hybrid contribution 1.667 -0.308 0.080 1.697 sum -8.905 3.354 -2.930 9.956 Atomic orbital electron populations 1.21751 0.93498 1.01219 1.02821 1.21381 0.96630 0.99330 0.93410 0.89146 1.22239 0.96193 1.01105 0.97695 1.21124 0.93045 0.96353 0.88252 1.44239 1.47992 1.39525 1.00654 1.19334 1.09152 1.03132 1.05882 0.91403 1.25555 0.98439 0.99385 1.00264 1.70108 1.38631 1.30354 1.18652 0.85473 0.77910 0.81381 0.77391 1.18902 1.22052 1.22836 1.20881 0.87991 0.96799 0.90040 1.22359 0.97379 0.78563 1.00694 0.86905 1.45466 1.29957 1.10137 1.25314 1.23083 1.02700 0.88499 0.99981 1.22397 1.01251 0.99433 1.00428 1.70113 1.25258 1.13774 1.15817 1.25332 0.96410 0.90731 1.00046 0.91348 0.91245 0.94350 0.90003 0.92083 0.96101 0.92678 0.94304 0.92549 0.95671 0.80678 0.81562 0.75851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.05 71.98 0.65 -2.34 16 2 C -0.09 -2.38 2.50 -10.66 -0.03 -2.40 16 3 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.13 -3.93 4.91 30.77 0.15 -3.78 16 5 C 0.14 5.02 6.12 86.36 0.53 5.55 16 6 N -0.60 -26.88 1.65 -699.13 -1.15 -28.03 16 7 C -0.24 -12.47 7.82 84.03 0.66 -11.81 16 8 H 0.07 3.41 7.88 -2.91 -0.02 3.39 16 9 C -0.04 -2.19 4.91 84.86 0.42 -1.77 16 10 N -0.93 -52.96 11.19 21.65 0.24 -52.71 16 11 Si 0.95 44.83 29.59 68.60 2.03 46.86 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 14 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 15 C 0.17 7.29 4.79 86.36 0.41 7.70 16 16 C 0.11 3.70 2.85 45.07 0.13 3.83 16 17 H 0.11 3.06 8.09 -2.39 -0.02 3.04 16 18 N -0.43 -15.03 1.95 -506.15 -0.98 -16.01 16 19 C -0.01 -0.27 7.70 83.09 0.64 0.37 16 20 C -0.09 -3.44 11.87 83.52 0.99 -2.45 16 21 N -0.53 -20.48 11.25 -200.31 -2.25 -22.73 16 22 C 0.16 5.26 12.24 180.26 2.21 7.46 16 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 0.99 7.38 -2.39 -0.02 0.97 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 1.99 4.94 -2.39 -0.01 1.97 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 30 H 0.25 13.89 8.31 -92.71 -0.77 13.11 16 31 H 0.06 2.91 6.05 -2.38 -0.01 2.89 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.18 7.30 4.28 -2.91 -0.01 7.29 16 34 H 0.17 5.80 8.06 -2.91 -0.02 5.78 16 35 H 0.23 5.56 8.06 -2.91 -0.02 5.54 16 Total: -1.00 -61.70 271.55 5.71 -55.99 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 1.07 Total: 16.28 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 6.76 Total: 0.36 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -4.15 Total: -119.49 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -61.70 5.71 -55.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156498797.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.999 kcal (2) G-P(sol) polarization free energy of solvation -61.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds