Wall clock time and date at job start Sun Mar 29 2020 22:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.45932 * 2 1 4 4 C 1.53039 * 109.46268 * 119.95891 * 2 1 3 5 5 C 1.53194 * 109.31545 * 181.38927 * 4 2 1 6 6 N 1.46927 * 108.77081 * 305.36580 * 5 4 2 7 7 C 1.36936 * 120.62960 * 233.58771 * 6 5 4 8 8 H 1.08005 * 120.00224 * 27.68354 * 7 6 5 9 9 C 1.38813 * 119.99942 * 207.68968 * 7 6 5 10 10 N 1.31612 * 120.00267 * 17.36066 * 9 7 6 11 11 Si 1.86807 * 119.99721 * 197.36377 * 9 7 6 12 12 H 1.48496 * 109.47121 * 59.99932 * 11 9 7 13 13 H 1.48498 * 109.46900 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47180 * 299.99845 * 11 9 7 15 15 C 1.46920 * 118.74182 * 53.60625 * 6 5 4 16 16 C 1.53036 * 109.46115 * 240.03079 * 2 1 3 17 17 H 1.08999 * 109.49762 * 298.59602 * 16 2 1 18 18 N 1.46497 * 109.49835 * 58.66011 * 16 2 1 19 19 C 1.36887 * 126.39451 * 240.02432 * 18 16 2 20 20 C 1.34671 * 106.81272 * 179.97438 * 19 18 16 21 21 N 1.34122 * 108.02526 * 0.02562 * 20 19 18 22 22 C 1.30503 * 109.25507 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.47220 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47347 * 299.96808 * 1 2 3 25 25 H 1.08997 * 109.47481 * 59.97050 * 1 2 3 26 26 H 1.09006 * 109.49861 * 301.33961 * 4 2 1 27 27 H 1.09004 * 109.49963 * 61.43067 * 4 2 1 28 28 H 1.08998 * 109.58701 * 65.14710 * 5 4 2 29 29 H 1.09001 * 109.58788 * 185.58105 * 5 4 2 30 30 H 0.97000 * 120.00477 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.58737 * 186.60352 * 15 6 5 32 32 H 1.09002 * 109.58693 * 66.17956 * 15 6 5 33 33 H 1.08001 * 126.59487 * 359.97438 * 19 18 16 34 34 H 1.08004 * 125.98635 * 180.02562 * 20 19 18 35 35 H 1.07994 * 125.64921 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6883 1.2644 6 7 4.0679 -1.2487 0.0001 7 6 4.9764 -2.2732 0.0002 8 1 5.0098 -2.9654 0.8286 9 6 5.8547 -2.4221 -1.0644 10 7 6.0604 -1.4204 -1.8929 11 14 6.7446 -4.0444 -1.3211 12 1 5.7498 -5.1283 -1.5225 13 1 7.6177 -3.9459 -2.5183 14 1 7.5734 -4.3487 -0.1271 15 6 3.5713 -0.6886 -1.2642 16 6 2.0398 -0.7208 -1.2500 17 1 1.6974 -1.7555 -1.2384 18 7 1.5255 -0.0489 -2.4459 19 6 0.7348 -0.6066 -3.4141 20 6 0.4960 0.3566 -4.3246 21 7 1.1242 1.4717 -3.9236 22 6 1.7428 1.2364 -2.7989 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5133 0.8903 25 1 -0.3634 0.5143 -0.8897 26 1 1.6572 -0.2205 2.1399 27 1 1.6978 -1.7555 1.2386 28 1 3.9143 0.3412 1.3673 29 1 3.9417 -1.2842 2.0986 30 1 6.6744 -1.5243 -2.6366 31 1 3.9417 -1.2847 -2.0983 32 1 3.9142 0.3409 -1.3674 33 1 0.3721 -1.6235 -3.4424 34 1 -0.0975 0.2498 -5.2206 35 1 2.3316 1.9509 -2.2429 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156498912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:07 Heat of formation + Delta-G solvation = 76.756818 kcal Electronic energy + Delta-G solvation = -17282.166607 eV Core-core repulsion = 14702.615393 eV Total energy + Delta-G solvation = -2579.551214 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.64378 -38.04243 -34.24685 -32.72919 -31.11880 -29.31412 -28.47219 -27.44755 -24.27652 -22.88301 -21.41398 -20.97415 -20.43949 -19.01185 -17.13050 -16.55499 -15.09593 -14.69390 -14.08479 -14.00022 -13.88103 -13.44254 -13.37984 -13.13340 -12.98586 -12.54227 -12.08750 -11.82017 -11.74956 -11.05945 -10.83557 -10.78589 -10.62862 -10.34482 -10.14844 -9.97112 -9.86036 -9.51217 -8.98014 -8.63010 -8.04768 -6.88170 -5.94439 -3.38879 2.58434 3.27937 3.34008 3.37319 3.37622 3.62689 4.37662 4.92075 5.10215 5.15906 5.20648 5.23303 5.38586 5.51297 5.57368 5.76772 5.82378 5.88970 5.95528 6.04493 6.09227 6.13910 6.31562 6.37330 6.43780 6.62531 6.75995 6.84671 7.02787 7.20318 7.36210 7.65537 7.72466 8.26689 8.54449 9.02281 9.65685 10.20586 11.13868 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024665 B = 0.009086 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.960938 B = 3080.762301 C = 3815.754566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.126 4.126 5 C 0.140 3.860 6 N -0.586 5.586 7 C -0.263 4.263 8 H 0.069 0.931 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.904 3.096 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.281 1.281 15 C 0.170 3.830 16 C 0.108 3.892 17 H 0.091 0.909 18 N -0.433 5.433 19 C -0.058 4.058 20 C -0.043 4.043 21 N -0.508 5.508 22 C 0.187 3.813 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.059 0.941 30 H 0.258 0.742 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.741 1.218 2.452 10.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.089 0.911 4 C -0.165 4.165 5 C 0.014 3.986 6 N -0.308 5.308 7 C -0.393 4.393 8 H 0.087 0.913 9 C -0.193 4.193 10 N -0.541 5.541 11 Si 0.734 3.266 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.207 1.207 15 C 0.042 3.958 16 C 0.004 3.996 17 H 0.109 0.891 18 N -0.113 5.113 19 C -0.193 4.193 20 C -0.192 4.192 21 N -0.226 5.226 22 C -0.096 4.096 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.046 0.954 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -9.525 1.884 2.049 9.923 hybrid contribution 0.497 -1.645 0.178 1.728 sum -9.028 0.239 2.226 9.301 Atomic orbital electron populations 1.21843 0.95609 1.01462 1.01363 1.21366 0.95052 0.99874 0.94774 0.91108 1.22093 0.98851 1.00042 0.95541 1.21019 0.90768 0.96793 0.90029 1.43937 1.47974 1.39980 0.98945 1.19139 1.10087 1.03399 1.06643 0.91292 1.25093 0.97008 0.97561 0.99641 1.69991 1.37315 1.29080 1.17749 0.86345 0.79284 0.83496 0.77524 1.20898 1.21487 1.20657 1.21057 0.84649 0.98528 0.91537 1.22684 0.99902 0.95912 0.81120 0.89103 1.45762 1.36025 1.10708 1.18778 1.22657 1.02777 1.00685 0.93164 1.22129 1.05769 0.89994 1.01321 1.70242 1.13141 1.28127 1.11138 1.24720 1.03359 0.86011 0.95535 0.93016 0.92826 0.92937 0.92179 0.92023 0.96039 0.92249 0.93238 0.88689 0.95448 0.81780 0.82166 0.78764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.02 37.16 0.34 -1.62 16 2 C -0.09 -1.41 2.12 -90.58 -0.19 -1.60 16 3 H 0.07 1.12 7.99 -51.92 -0.41 0.70 16 4 C -0.13 -1.95 5.36 -26.61 -0.14 -2.10 16 5 C 0.14 2.69 6.52 -3.71 -0.02 2.67 16 6 N -0.59 -13.74 2.99 -172.32 -0.52 -14.25 16 7 C -0.26 -6.88 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 9 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 10 N -0.90 -25.37 11.19 55.49 0.62 -24.75 16 11 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 C 0.17 3.79 4.70 -3.71 -0.02 3.78 16 16 C 0.11 1.93 2.47 -67.81 -0.17 1.76 16 17 H 0.09 1.66 8.08 -51.93 -0.42 1.24 16 18 N -0.43 -7.45 1.80 -111.34 -0.20 -7.65 16 19 C -0.06 -0.92 11.54 -16.56 -0.19 -1.12 16 20 C -0.04 -0.71 11.87 -17.81 -0.21 -0.92 16 21 N -0.51 -9.40 11.25 -14.67 -0.17 -9.56 16 22 C 0.19 3.30 11.49 -90.37 -1.04 2.26 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.75 7.57 -51.93 -0.39 0.36 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.09 2.48 6.04 -51.93 -0.31 2.16 16 32 H 0.03 0.65 7.80 -51.93 -0.41 0.25 16 33 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.16 2.16 8.06 -52.48 -0.42 1.74 16 35 H 0.20 3.09 8.06 -52.49 -0.42 2.66 16 LS Contribution 284.21 15.07 4.28 4.28 Total: -1.00 -29.02 284.21 -8.18 -37.20 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.29 Total: 2.53 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.88 Total: -3.83 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.26 Total: -56.21 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.02 -8.18 -37.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156498912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.957 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds